RNA–Protein interactions for RNA: ENST00000477447.6

TARDBP-208, Transcript of TAR DNA binding protein, human

TSL 5

Gene TARDBP, Length 409 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TARDBP-208	ENST00000477447	AEBP2	Q6ZN18	517 aa	Predicted RBP	16.76	■□□□□ 0.27
TARDBP-208	ENST00000477447	CHIC1	Q5VXU3	224 aa		16.5	■□□□□ 0.23
TARDBP-208	ENST00000477447	PHF23	Q9BUL5	403 aa	Predicted RBP	14.52	□□□□□ -0.09
TARDBP-208	ENST00000477447	SENP3	Q9H4L4	574 aa	Predicted RBP	14.21	□□□□□ -0.13
TARDBP-208	ENST00000477447	PLPPR3	Q6T4P5	718 aa		13.46	□□□□□ -0.25
TARDBP-208	ENST00000477447	FOXD1	Q16676	465 aa		13.16	□□□□□ -0.3
TARDBP-208	ENST00000477447	ADRA2B	P18089	450 aa		12.79	□□□□□ -0.36
TARDBP-208	ENST00000477447	PPP6R1	Q9UPN7	881 aa		12.77	□□□□□ -0.37
TARDBP-208	ENST00000477447	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.48	□□□□□ -0.41
TARDBP-208	ENST00000477447	MSH5	O43196	834 aa		12.09	□□□□□ -0.47
TARDBP-208	ENST00000477447	POTED	Q86YR6	584 aa		11.91	□□□□□ -0.5
TARDBP-208	ENST00000477447	PPP4R3CP	Q6ZMV5	832 aa		11.88	□□□□□ -0.51
TARDBP-208	ENST00000477447	KCNA4	P22459	653 aa		11.77	□□□□□ -0.53
TARDBP-208	ENST00000477447	SCAF1	Q9H7N4	1312 aa	Known RBP	11.67	□□□□□ -0.54
TARDBP-208	ENST00000477447	NCBP3	Q53F19	620 aa	Known RBP	11.61	□□□□□ -0.55
TARDBP-208	ENST00000477447	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.55	□□□□□ -0.56
TARDBP-208	ENST00000477447	CNKSR2	Q8WXI2	1034 aa		11.51	□□□□□ -0.57
TARDBP-208	ENST00000477447	NPM3	O75607	178 aa	Known RBP	11.44	□□□□□ -0.58
TARDBP-208	ENST00000477447	DMRT2	Q9Y5R5	561 aa		11.35	□□□□□ -0.59
TARDBP-208	ENST00000477447	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.25	□□□□□ -0.61
TARDBP-208	ENST00000477447	RNF216	Q9NWF9	866 aa	Predicted RBP	11.25	□□□□□ -0.61
TARDBP-208	ENST00000477447	HOXD11	P31277	338 aa	Predicted RBP	11.16	□□□□□ -0.62
TARDBP-208	ENST00000477447	EHMT2	Q96KQ7	1210 aa		11.12	□□□□□ -0.63
TARDBP-208	ENST00000477447	DNAJC5B	Q9UF47	199 aa		11.02	□□□□□ -0.65
TARDBP-208	ENST00000477447	DCAF8L1	A6NGE4	600 aa		10.92	□□□□□ -0.66
TARDBP-208	ENST00000477447	CSRNP3	Q8WYN3	585 aa		10.87	□□□□□ -0.67
TARDBP-208	ENST00000477447	ZBTB22	O15209	634 aa		10.84	□□□□□ -0.67
TARDBP-208	ENST00000477447	FOXD4L1	Q9NU39	408 aa		10.81	□□□□□ -0.68
TARDBP-208	ENST00000477447	SLC4A2	P04920	1241 aa		10.76	□□□□□ -0.69
TARDBP-208	ENST00000477447	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.68	□□□□□ -0.7
TARDBP-208	ENST00000477447	MYCN	P04198	464 aa	Predicted RBP	10.58	□□□□□ -0.72
TARDBP-208	ENST00000477447		U3KPZ7	1027 aa	Predicted RBP	10.51	□□□□□ -0.73
TARDBP-208	ENST00000477447	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.41	□□□□□ -0.74
TARDBP-208	ENST00000477447	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.41	□□□□□ -0.74
TARDBP-208	ENST00000477447	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.39	□□□□□ -0.75
TARDBP-208	ENST00000477447	ATXN8OS	P0DMR3	200 aa		10.37	□□□□□ -0.75
TARDBP-208	ENST00000477447	RNF39	Q9H2S5	420 aa		10.37	□□□□□ -0.75
TARDBP-208	ENST00000477447	CACNB1	Q02641	598 aa	Predicted RBP	10.28	□□□□□ -0.76
TARDBP-208	ENST00000477447	APLP2	Q06481	763 aa		10.28	□□□□□ -0.76
TARDBP-208	ENST00000477447	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.28	□□□□□ -0.76
TARDBP-208	ENST00000477447	C1QBP	Q07021	282 aa	Known RBP	10.24	□□□□□ -0.77
TARDBP-208	ENST00000477447	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.19	□□□□□ -0.78
TARDBP-208	ENST00000477447	CAPN15	O75808	1086 aa		10.16	□□□□□ -0.78
TARDBP-208	ENST00000477447	TRH	P20396	242 aa	Predicted RBP	10.13	□□□□□ -0.79
TARDBP-208	ENST00000477447	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.12	□□□□□ -0.79
TARDBP-208	ENST00000477447	ABCB7	O75027	752 aa		9.98	□□□□□ -0.81
TARDBP-208	ENST00000477447	POLA2	Q14181	598 aa		9.97	□□□□□ -0.81
TARDBP-208	ENST00000477447	DSG3	P32926	999 aa		9.92	□□□□□ -0.82
TARDBP-208	ENST00000477447	FBLN2	P98095	1184 aa		9.86	□□□□□ -0.83
TARDBP-208	ENST00000477447	FKBP8	Q14318	412 aa		9.86	□□□□□ -0.83
TARDBP-208	ENST00000477447	MKRN4P	Q13434	485 aa	Predicted RBP	9.84	□□□□□ -0.83
TARDBP-208	ENST00000477447	ZBTB12	Q9Y330	459 aa	Predicted RBP	9.82	□□□□□ -0.84
TARDBP-208	ENST00000477447	SPDYE4	A6NLX3	237 aa		9.7	□□□□□ -0.86
TARDBP-208	ENST00000477447	OSCAR	Q8IYS5	282 aa		9.67	□□□□□ -0.86
TARDBP-208	ENST00000477447	SPDYE2B	A6NHP3	402 aa		9.57	□□□□□ -0.88
TARDBP-208	ENST00000477447	SPDYE6	P0CI01	402 aa		9.57	□□□□□ -0.88
TARDBP-208	ENST00000477447	SPDYE2	Q495Y8	402 aa		9.57	□□□□□ -0.88
TARDBP-208	ENST00000477447	ZNF692	Q9BU19	519 aa	Predicted RBP	9.55	□□□□□ -0.88
TARDBP-208	ENST00000477447	PROM2	Q8N271	834 aa		9.52	□□□□□ -0.89
TARDBP-208	ENST00000477447	SSUH2	Q9Y2M2	353 aa		9.5	□□□□□ -0.89
TARDBP-208	ENST00000477447	RBM42	Q9BTD8	480 aa	Known RBP	9.46	□□□□□ -0.9
TARDBP-208	ENST00000477447	PABPN1	Q86U42	306 aa	Known RBP eCLIP	9.44	□□□□□ -0.9
TARDBP-208	ENST00000477447	FBXO3	Q9UK99	471 aa		9.43	□□□□□ -0.9
TARDBP-208	ENST00000477447	AKT1S1	Q96B36	256 aa		9.36	□□□□□ -0.91
TARDBP-208	ENST00000477447	VASP	P50552	380 aa	Predicted RBP	9.33	□□□□□ -0.92
TARDBP-208	ENST00000477447	STAG3	Q9UJ98	1225 aa		9.29	□□□□□ -0.92
TARDBP-208	ENST00000477447	POTEH	Q6S545	545 aa		9.28	□□□□□ -0.92
TARDBP-208	ENST00000477447	REM2	Q8IYK8	340 aa	Predicted RBP	9.27	□□□□□ -0.93
TARDBP-208	ENST00000477447	SPDYE1	Q8NFV5	336 aa	Predicted RBP	9.26	□□□□□ -0.93
TARDBP-208	ENST00000477447	CLEC11A	Q9Y240	323 aa		9.24	□□□□□ -0.93
TARDBP-208	ENST00000477447	AMER1	Q5JTC6	1135 aa	Predicted RBP	9.21	□□□□□ -0.94
TARDBP-208	ENST00000477447	PLCD3	Q8N3E9	789 aa		9.2	□□□□□ -0.94
TARDBP-208	ENST00000477447	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.19	□□□□□ -0.94
TARDBP-208	ENST00000477447	RTN4	Q9NQC3	1192 aa	Known RBP	9.19	□□□□□ -0.94
TARDBP-208	ENST00000477447	PITPNM1	O00562	1244 aa		9.18	□□□□□ -0.94
TARDBP-208	ENST00000477447	MIER1	Q8N108	512 aa		9.18	□□□□□ -0.94
TARDBP-208	ENST00000477447	PRR29	P0C7W0	189 aa		9.15	□□□□□ -0.94
TARDBP-208	ENST00000477447	KLHL34	Q8N239	644 aa		9.15	□□□□□ -0.94
TARDBP-208	ENST00000477447	PLEKHG5	O94827	1062 aa		9.13	□□□□□ -0.95
TARDBP-208	ENST00000477447	SPOCK2	Q92563	424 aa		9.07	□□□□□ -0.96
TARDBP-208	ENST00000477447	ZBTB47	Q9UFB7	747 aa	Predicted RBP	9.07	□□□□□ -0.96
TARDBP-208	ENST00000477447	CREBZF	Q9NS37	354 aa		9.06	□□□□□ -0.96
TARDBP-208	ENST00000477447	CHRDL2	Q6WN34	429 aa		9.01	□□□□□ -0.97
TARDBP-208	ENST00000477447	CHADL	Q6NUI6	762 aa		9	□□□□□ -0.97
TARDBP-208	ENST00000477447	MNX1	P50219	401 aa	Predicted RBP	8.96	□□□□□ -0.98
TARDBP-208	ENST00000477447	PRKAR2A	P13861	404 aa	Known RBP	8.95	□□□□□ -0.98
TARDBP-208	ENST00000477447	FXR2	P51116	673 aa	Known RBP eCLIP	8.95	□□□□□ -0.98
TARDBP-208	ENST00000477447	PKD2	Q13563	968 aa		8.93	□□□□□ -0.98
TARDBP-208	ENST00000477447	PIP4P2	Q8N4L2	257 aa		8.93	□□□□□ -0.98
TARDBP-208	ENST00000477447	CIZ1	Q9ULV3	898 aa	Predicted RBP	8.93	□□□□□ -0.98
TARDBP-208	ENST00000477447	NPM1	P06748	294 aa	Known RBP eCLIP	8.91	□□□□□ -0.98
TARDBP-208	ENST00000477447	NUBP1	P53384	320 aa		8.91	□□□□□ -0.98
TARDBP-208	ENST00000477447	FARP1	Q9Y4F1	1045 aa	Predicted RBP	8.9	□□□□□ -0.98
TARDBP-208	ENST00000477447	ECM2	O94769	699 aa	Predicted RBP	8.88	□□□□□ -0.99
TARDBP-208	ENST00000477447	FAM212A	Q96EL1	285 aa		8.88	□□□□□ -0.99
TARDBP-208	ENST00000477447	RASEF	Q8IZ41	740 aa		8.87	□□□□□ -0.99
TARDBP-208	ENST00000477447	GSE1	Q14687	1217 aa		8.86	□□□□□ -0.99
TARDBP-208	ENST00000477447	DCAF8	Q5TAQ9	597 aa		8.86	□□□□□ -0.99
TARDBP-208	ENST00000477447	DCAF8L2	P0C7V8	631 aa		8.85	□□□□□ -0.99
TARDBP-208	ENST00000477447	TRIM41	Q8WV44	630 aa		8.81	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms