RNA–Protein interactions for RNA: ENST00000474586.5

TRA2A-204, Transcript of transformer 2 alpha homolog, humanhuman

TSL 3

Gene TRA2A, Length 868 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-204ENST00000474586 NISCHQ9Y2I1 1504 aa52.66■■■■■ 6.02
TRA2A-204ENST00000474586 CCDC180Q9P1Z9 1646 aa47.09■■■■■ 5.13
TRA2A-204ENST00000474586 ABCC9O60706 1549 aa46.93■■■■■ 5.1
TRA2A-204ENST00000474586 RB1CC1Q8TDY2 1594 aa44.73■■■■■ 4.75
TRA2A-204ENST00000474586 NACADO15069 1562 aa44.48■■■■■ 4.71
TRA2A-204ENST00000474586 DCAF8L2P0C7V8 631 aa44.45■■■■■ 4.71
TRA2A-204ENST00000474586 MYO15BQ96JP2 1530 aa43.93■■■■■ 4.62
TRA2A-204ENST00000474586 DNAJC5BQ9UF47 199 aa43.83■■■■■ 4.61
TRA2A-204ENST00000474586 PABPN1Q86U42 306 aaKnown RBP eCLIP43.78■■■■■ 4.6
TRA2A-204ENST00000474586 UNC13AQ9UPW8 1703 aa43.73■■■■■ 4.59
TRA2A-204ENST00000474586 ZCCHC6Q5VYS8 1495 aaKnown RBP43.69■■■■■ 4.58
TRA2A-204ENST00000474586 DCAF1Q9Y4B6 1507 aa43.48■■■■■ 4.55
TRA2A-204ENST00000474586 BICRAQ9NZM4 1560 aa43.44■■■■■ 4.54
TRA2A-204ENST00000474586 SCRIBQ14160 1630 aa43■■■■■ 4.47
TRA2A-204ENST00000474586 SHROOM4Q9ULL8 1493 aa42.8■■■■■ 4.44
TRA2A-204ENST00000474586 CC2D2AQ9P2K1 1620 aa42.37■■■■■ 4.37
TRA2A-204ENST00000474586 EIF4G1Q04637 1599 aaKnown RBP42.34■■■■■ 4.37
TRA2A-204ENST00000474586 CECR2Q9BXF3 1484 aa42.22■■■■■ 4.35
TRA2A-204ENST00000474586 NCAPD3P42695 1498 aa41.08■■■■■ 4.17
TRA2A-204ENST00000474586 SMARCA4P51532 1647 aa41.02■■■■■ 4.16
TRA2A-204ENST00000474586 ATAD2BQ9ULI0 1458 aa41.01■■■■■ 4.16
TRA2A-204ENST00000474586 SMARCA2P51531 1590 aa40.87■■■■■ 4.13
TRA2A-204ENST00000474586 BAZ1AQ9NRL2 1556 aaPredicted RBP40.84■■■■■ 4.13
TRA2A-204ENST00000474586 HMGXB3Q12766 1538 aa40.77■■■■■ 4.12
TRA2A-204ENST00000474586 BAZ1BQ9UIG0 1483 aaKnown RBP40.62■■■■■ 4.09
TRA2A-204ENST00000474586 MROH2BQ7Z745 1585 aa40.61■■■■■ 4.09
TRA2A-204ENST00000474586 PEG3Q9GZU2 1588 aa40.59■■■■■ 4.09
TRA2A-204ENST00000474586 ERCC6Q03468 1493 aa40.47■■■■■ 4.07
TRA2A-204ENST00000474586 NESP48681 1621 aa40.39■■■■■ 4.06
TRA2A-204ENST00000474586 CUX2O14529 1486 aa40.26■■■■■ 4.04
TRA2A-204ENST00000474586 WIZO95785 1651 aa40.13■■■■■ 4.01
TRA2A-204ENST00000474586 LAMC3Q9Y6N6 1575 aa40.09■■■■■ 4.01
TRA2A-204ENST00000474586 DNAJC5Q9H3Z4 198 aa40.01■■■■■ 4
TRA2A-204ENST00000474586 RSF1Q96T23 1441 aaPredicted RBP39.87■■■■□ 3.97
TRA2A-204ENST00000474586 PDS5BQ9NTI5 1447 aa39.87■■■■□ 3.97
TRA2A-204ENST00000474586 THOC2Q8NI27 1593 aaKnown RBP39.87■■■■□ 3.97
TRA2A-204ENST00000474586 CADPSQ9ULU8 1353 aa39.86■■■■□ 3.97
TRA2A-204ENST00000474586 KIF21AQ7Z4S6 1674 aa39.85■■■■□ 3.97
TRA2A-204ENST00000474586 TOP2AP11388 1531 aaKnown RBP39.61■■■■□ 3.93
TRA2A-204ENST00000474586 MRC2Q9UBG0 1479 aa39.51■■■■□ 3.92
TRA2A-204ENST00000474586 CFTRP13569 1480 aa39.44■■■■□ 3.9
TRA2A-204ENST00000474586 FANCD2Q9BXW9 1451 aa39.41■■■■□ 3.9
TRA2A-204ENST00000474586 CEP164Q9UPV0 1460 aa39.41■■■■□ 3.9
TRA2A-204ENST00000474586 WDR62O43379 1518 aa39.4■■■■□ 3.9
TRA2A-204ENST00000474586 CCDC88BA6NC98 1476 aa39.21■■■■□ 3.87
TRA2A-204ENST00000474586 URB2Q14146 1524 aaKnown RBP39.08■■■■□ 3.85
TRA2A-204ENST00000474586 PRDM2Q13029 1718 aa39.03■■■■□ 3.84
TRA2A-204ENST00000474586 TOPBP1Q92547 1522 aa38.69■■■■□ 3.78
TRA2A-204ENST00000474586 IFT140Q96RY7 1462 aa38.61■■■■□ 3.77
TRA2A-204ENST00000474586 ABCC8Q09428 1581 aa38.6■■■■□ 3.77
TRA2A-204ENST00000474586 ZNF608Q9ULD9 1512 aaPredicted RBP38.56■■■■□ 3.76
TRA2A-204ENST00000474586 DNMBPQ6XZF7 1577 aa38.55■■■■□ 3.76
TRA2A-204ENST00000474586 OSCARQ8IYS5 282 aa38.54■■■■□ 3.76
TRA2A-204ENST00000474586 TRIM41Q8WV44 630 aa38.41■■■■□ 3.74
TRA2A-204ENST00000474586 SUPT5HO00267 1087 aaKnown RBP38.37■■■■□ 3.73
TRA2A-204ENST00000474586 EIF4G3O43432 1585 aaKnown RBP38.32■■■■□ 3.73
TRA2A-204ENST00000474586 TARBP1Q13395 1621 aaKnown RBP38.31■■■■□ 3.72
TRA2A-204ENST00000474586 POLA1P09884 1462 aaPredicted RBP38.3■■■■□ 3.72
TRA2A-204ENST00000474586 AQRO60306 1485 aaKnown RBP eCLIP38.26■■■■□ 3.727e-7■■□□□ 14
TRA2A-204ENST00000474586 RAD54L2Q9Y4B4 1467 aa38.2■■■■□ 3.71
TRA2A-204ENST00000474586 SOGA1O94964 1423 aa38.17■■■■□ 3.7
TRA2A-204ENST00000474586 CUX1P39880 1505 aa38.12■■■■□ 3.69
TRA2A-204ENST00000474586 FGD5Q6ZNL6 1462 aa38.12■■■■□ 3.69
TRA2A-204ENST00000474586 TDRD9Q8NDG6 1382 aaKnown RBP38.07■■■■□ 3.69
TRA2A-204ENST00000474586 CHD1O14646 1710 aa38■■■■□ 3.67
TRA2A-204ENST00000474586 RIMBP3CA6NJZ7 1639 aa37.98■■■■□ 3.67
TRA2A-204ENST00000474586 RIMBP3BA6NNM3 1639 aa37.98■■■■□ 3.67
TRA2A-204ENST00000474586 RIMBP3Q9UFD9 1639 aa37.98■■■■□ 3.67
TRA2A-204ENST00000474586 FBLN2P98095 1184 aa37.98■■■■□ 3.67
TRA2A-204ENST00000474586 WDR97A6NE52 1622 aa37.89■■■■□ 3.66
TRA2A-204ENST00000474586 ARHGEF11O15085 1522 aa37.88■■■■□ 3.65
TRA2A-204ENST00000474586 SNAPC4Q5SXM2 1469 aa37.85■■■■□ 3.65
TRA2A-204ENST00000474586 GRIN2BQ13224 1484 aa37.77■■■■□ 3.64
TRA2A-204ENST00000474586 MAGI1Q96QZ7 1491 aaPredicted RBP37.73■■■■□ 3.63
TRA2A-204ENST00000474586 CHMP7Q8WUX9 453 aaPredicted RBP37.72■■■■□ 3.63
TRA2A-204ENST00000474586 GAPVD1Q14C86 1478 aa37.69■■■■□ 3.62
TRA2A-204ENST00000474586 ABCA10Q8WWZ4 1543 aa37.68■■■■□ 3.62
TRA2A-204ENST00000474586 CYB5RLQ6IPT4 315 aa37.65■■■■□ 3.62
TRA2A-204ENST00000474586 PBRM1Q86U86 1689 aa37.63■■■■□ 3.62
TRA2A-204ENST00000474586 SYNJ2O15056 1496 aa37.61■■■■□ 3.61
TRA2A-204ENST00000474586 ABCA5Q8WWZ7 1642 aa37.59■■■■□ 3.61
TRA2A-204ENST00000474586 WRNQ14191 1432 aaPredicted RBP eCLIP37.59■■■■□ 3.61
TRA2A-204ENST00000474586 SYNJ1O43426 1573 aa37.56■■■■□ 3.6
TRA2A-204ENST00000474586 TOP2BQ02880 1626 aa37.56■■■■□ 3.6
TRA2A-204ENST00000474586 BIVM-ERCC5R4GMW8 1640 aa37.56■■■■□ 3.6
TRA2A-204ENST00000474586 CLASP1Q7Z460 1538 aa37.56■■■■□ 3.6
TRA2A-204ENST00000474586 ARAP1Q96P48 1450 aa37.54■■■■□ 3.6
TRA2A-204ENST00000474586 ADAMTS12P58397 1594 aa37.29■■■■□ 3.56
TRA2A-204ENST00000474586 GRIN2AQ12879 1464 aa37.29■■■■□ 3.56
TRA2A-204ENST00000474586 FHAD1B1AJZ9 1412 aa37.22■■■■□ 3.55
TRA2A-204ENST00000474586 ERICH3Q5RHP9 1530 aa37.2■■■■□ 3.55
TRA2A-204ENST00000474586 TRHP20396 242 aaPredicted RBP37.15■■■■□ 3.54
TRA2A-204ENST00000474586 NUP160Q12769 1436 aa37.15■■■■□ 3.54
TRA2A-204ENST00000474586 CEP170Q5SW79 1584 aa37.15■■■■□ 3.54
TRA2A-204ENST00000474586 ERCC6L2Q5T890 1561 aa37.04■■■■□ 3.52
TRA2A-204ENST00000474586 SHROOM2Q13796 1616 aa36.94■■■■□ 3.5
TRA2A-204ENST00000474586 KIF27Q86VH2 1401 aa36.86■■■■□ 3.49
TRA2A-204ENST00000474586 IGF1RP08069 1367 aa36.84■■■■□ 3.49
TRA2A-204ENST00000474586 JPH4Q96JJ6 628 aa36.82■■■■□ 3.48
TRA2A-204ENST00000474586 PRG4Q92954 1404 aaPredicted RBP36.8■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms