RNA–Protein interactions for RNA: ENST00000448549.1

TRA2A-203, Transcript of transformer 2 alpha homolog, humanhuman

TSL 4

Gene TRA2A, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-203ENST00000448549 NISCHQ9Y2I1 1504 aa38.89■■■■□ 3.82
TRA2A-203ENST00000448549 ABCC9O60706 1549 aa34.99■■■■□ 3.19
TRA2A-203ENST00000448549 CCDC180Q9P1Z9 1646 aa34.79■■■■□ 3.16
TRA2A-203ENST00000448549 RB1CC1Q8TDY2 1594 aa33.21■■■□□ 2.91
TRA2A-203ENST00000448549 DCAF8L2P0C7V8 631 aa32.99■■■□□ 2.87
TRA2A-203ENST00000448549 NACADO15069 1562 aa32.98■■■□□ 2.87
TRA2A-203ENST00000448549 DNAJC5BQ9UF47 199 aa32.92■■■□□ 2.86
TRA2A-203ENST00000448549 PABPN1Q86U42 306 aaKnown RBP eCLIP32.64■■■□□ 2.82
TRA2A-203ENST00000448549 MYO15BQ96JP2 1530 aa32.51■■■□□ 2.79
TRA2A-203ENST00000448549 UNC13AQ9UPW8 1703 aa32.33■■■□□ 2.77
TRA2A-203ENST00000448549 BICRAQ9NZM4 1560 aa32.25■■■□□ 2.75
TRA2A-203ENST00000448549 ZCCHC6Q5VYS8 1495 aaKnown RBP32.22■■■□□ 2.75
TRA2A-203ENST00000448549 DCAF1Q9Y4B6 1507 aa32.08■■■□□ 2.73
TRA2A-203ENST00000448549 SCRIBQ14160 1630 aa31.79■■■□□ 2.68
TRA2A-203ENST00000448549 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
TRA2A-203ENST00000448549 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
TRA2A-203ENST00000448549 CECR2Q9BXF3 1484 aa31.52■■■□□ 2.64
TRA2A-203ENST00000448549 EIF4G1Q04637 1599 aaKnown RBP31.47■■■□□ 2.63
TRA2A-203ENST00000448549 NCAPD3P42695 1498 aa30.5■■■□□ 2.47
TRA2A-203ENST00000448549 ATAD2BQ9ULI0 1458 aa30.41■■■□□ 2.46
TRA2A-203ENST00000448549 SMARCA4P51532 1647 aa30.3■■■□□ 2.44
TRA2A-203ENST00000448549 SMARCA2P51531 1590 aa30.27■■■□□ 2.44
TRA2A-203ENST00000448549 DNAJC5Q9H3Z4 198 aa30.22■■■□□ 2.43
TRA2A-203ENST00000448549 HMGXB3Q12766 1538 aa30.21■■■□□ 2.43
TRA2A-203ENST00000448549 ERCC6Q03468 1493 aa30.2■■■□□ 2.43
TRA2A-203ENST00000448549 BAZ1AQ9NRL2 1556 aaPredicted RBP30.17■■■□□ 2.42
TRA2A-203ENST00000448549 CUX2O14529 1486 aa30.11■■■□□ 2.41
TRA2A-203ENST00000448549 BAZ1BQ9UIG0 1483 aaKnown RBP30.1■■■□□ 2.41
TRA2A-203ENST00000448549 NESP48681 1621 aa30.04■■■□□ 2.4
TRA2A-203ENST00000448549 PEG3Q9GZU2 1588 aa30■■■□□ 2.39
TRA2A-203ENST00000448549 MROH2BQ7Z745 1585 aa29.98■■■□□ 2.39
TRA2A-203ENST00000448549 LAMC3Q9Y6N6 1575 aa29.75■■■□□ 2.35
TRA2A-203ENST00000448549 THOC2Q8NI27 1593 aaKnown RBP29.65■■■□□ 2.34
TRA2A-203ENST00000448549 PDS5BQ9NTI5 1447 aa29.65■■■□□ 2.34
TRA2A-203ENST00000448549 CADPSQ9ULU8 1353 aa29.6■■■□□ 2.33
TRA2A-203ENST00000448549 WIZO95785 1651 aa29.57■■■□□ 2.32
TRA2A-203ENST00000448549 KIF21AQ7Z4S6 1674 aa29.53■■■□□ 2.32
TRA2A-203ENST00000448549 RSF1Q96T23 1441 aaPredicted RBP29.38■■■□□ 2.29
TRA2A-203ENST00000448549 MRC2Q9UBG0 1479 aa29.38■■■□□ 2.29
TRA2A-203ENST00000448549 WDR62O43379 1518 aa29.28■■■□□ 2.28
TRA2A-203ENST00000448549 CEP164Q9UPV0 1460 aa29.25■■■□□ 2.27
TRA2A-203ENST00000448549 FANCD2Q9BXW9 1451 aa29.24■■■□□ 2.27
TRA2A-203ENST00000448549 CFTRP13569 1480 aa29.23■■■□□ 2.27
TRA2A-203ENST00000448549 TOP2AP11388 1531 aaKnown RBP29.21■■■□□ 2.27
TRA2A-203ENST00000448549 URB2Q14146 1524 aaKnown RBP28.99■■■□□ 2.23
TRA2A-203ENST00000448549 CCDC88BA6NC98 1476 aa28.94■■■□□ 2.22
TRA2A-203ENST00000448549 TRIM41Q8WV44 630 aa28.92■■■□□ 2.22
TRA2A-203ENST00000448549 OSCARQ8IYS5 282 aa28.83■■■□□ 2.21
TRA2A-203ENST00000448549 PRDM2Q13029 1718 aa28.72■■■□□ 2.19
TRA2A-203ENST00000448549 IFT140Q96RY7 1462 aa28.68■■■□□ 2.18
TRA2A-203ENST00000448549 TOPBP1Q92547 1522 aa28.67■■■□□ 2.18
TRA2A-203ENST00000448549 ZNF608Q9ULD9 1512 aaPredicted RBP28.66■■■□□ 2.18
TRA2A-203ENST00000448549 ABCC8Q09428 1581 aa28.58■■■□□ 2.17
TRA2A-203ENST00000448549 DNMBPQ6XZF7 1577 aa28.52■■■□□ 2.16
TRA2A-203ENST00000448549 EIF4G3O43432 1585 aaKnown RBP28.42■■■□□ 2.14
TRA2A-203ENST00000448549 AQRO60306 1485 aaKnown RBP eCLIP28.42■■■□□ 2.142e-9■□□□□ 10
TRA2A-203ENST00000448549 POLA1P09884 1462 aaPredicted RBP28.38■■■□□ 2.13
TRA2A-203ENST00000448549 TARBP1Q13395 1621 aaKnown RBP28.37■■■□□ 2.13
TRA2A-203ENST00000448549 RIMBP3CA6NJZ7 1639 aa28.33■■■□□ 2.13
TRA2A-203ENST00000448549 RIMBP3BA6NNM3 1639 aa28.33■■■□□ 2.13
TRA2A-203ENST00000448549 RIMBP3Q9UFD9 1639 aa28.33■■■□□ 2.13
TRA2A-203ENST00000448549 RAD54L2Q9Y4B4 1467 aa28.31■■■□□ 2.12
TRA2A-203ENST00000448549 SOGA1O94964 1423 aa28.29■■■□□ 2.12
TRA2A-203ENST00000448549 FBLN2P98095 1184 aa28.29■■■□□ 2.12
TRA2A-203ENST00000448549 ARHGEF11O15085 1522 aa28.28■■■□□ 2.12
TRA2A-203ENST00000448549 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.12
TRA2A-203ENST00000448549 FGD5Q6ZNL6 1462 aa28.21■■■□□ 2.11
TRA2A-203ENST00000448549 CYB5RLQ6IPT4 315 aa28.18■■■□□ 2.1
TRA2A-203ENST00000448549 CHD1O14646 1710 aa28.16■■■□□ 2.1
TRA2A-203ENST00000448549 CUX1P39880 1505 aa28.16■■■□□ 2.1
TRA2A-203ENST00000448549 SUPT5HO00267 1087 aaKnown RBP28.15■■■□□ 2.1
TRA2A-203ENST00000448549 SNAPC4Q5SXM2 1469 aa28.09■■■□□ 2.09
TRA2A-203ENST00000448549 CHMP7Q8WUX9 453 aaPredicted RBP28.06■■■□□ 2.08
TRA2A-203ENST00000448549 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
TRA2A-203ENST00000448549 GRIN2BQ13224 1484 aa28.02■■■□□ 2.08
TRA2A-203ENST00000448549 ARAP1Q96P48 1450 aa28.02■■■□□ 2.08
TRA2A-203ENST00000448549 MAGI1Q96QZ7 1491 aaPredicted RBP27.99■■■□□ 2.07
TRA2A-203ENST00000448549 SYNJ2O15056 1496 aa27.92■■■□□ 2.06
TRA2A-203ENST00000448549 GAPVD1Q14C86 1478 aa27.91■■■□□ 2.06
TRA2A-203ENST00000448549 CLASP1Q7Z460 1538 aa27.91■■■□□ 2.06
TRA2A-203ENST00000448549 SYNJ1O43426 1573 aa27.88■■■□□ 2.05
TRA2A-203ENST00000448549 TRHP20396 242 aaPredicted RBP27.88■■■□□ 2.05
TRA2A-203ENST00000448549 ABCA10Q8WWZ4 1543 aa27.87■■■□□ 2.05
TRA2A-203ENST00000448549 WRNQ14191 1432 aaPredicted RBP eCLIP27.79■■■□□ 2.04
TRA2A-203ENST00000448549 ABCA5Q8WWZ7 1642 aa27.78■■■□□ 2.04
TRA2A-203ENST00000448549 PBRM1Q86U86 1689 aa27.77■■■□□ 2.04
TRA2A-203ENST00000448549 TOP2BQ02880 1626 aa27.67■■■□□ 2.02
TRA2A-203ENST00000448549 GRIN2AQ12879 1464 aa27.64■■■□□ 2.02
TRA2A-203ENST00000448549 BIVM-ERCC5R4GMW8 1640 aa27.63■■■□□ 2.01
TRA2A-203ENST00000448549 ADAMTS12P58397 1594 aa27.57■■■□□ 2
TRA2A-203ENST00000448549 FHAD1B1AJZ9 1412 aa27.57■■■□□ 2
TRA2A-203ENST00000448549 NUP160Q12769 1436 aa27.56■■■□□ 2
TRA2A-203ENST00000448549 CEP170Q5SW79 1584 aa27.52■■■□□ 2
TRA2A-203ENST00000448549 ERCC6L2Q5T890 1561 aa27.51■■□□□ 1.99
TRA2A-203ENST00000448549 ERICH3Q5RHP9 1530 aa27.5■■□□□ 1.99
TRA2A-203ENST00000448549 SHROOM2Q13796 1616 aa27.37■■□□□ 1.97
TRA2A-203ENST00000448549 JPH4Q96JJ6 628 aa27.34■■□□□ 1.97
TRA2A-203ENST00000448549 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.97
TRA2A-203ENST00000448549 IGF1RP08069 1367 aa27.23■■□□□ 1.95
TRA2A-203ENST00000448549 KIF27Q86VH2 1401 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms