RNA–Protein interactions for RNA: ENST00000472725.5

SF1-213, Transcript of splicing factor 1, humanhuman

TSL 3

Gene SF1, Length 632 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-213ENST00000472725 NISCHQ9Y2I1 1504 aa47.86■■■■■ 5.25
SF1-213ENST00000472725 CCDC180Q9P1Z9 1646 aa42.46■■■■■ 4.39
SF1-213ENST00000472725 ABCC9O60706 1549 aa40.99■■■■■ 4.15
SF1-213ENST00000472725 ZCCHC6Q5VYS8 1495 aaKnown RBP39.95■■■■□ 3.99
SF1-213ENST00000472725 NACADO15069 1562 aa39.83■■■■□ 3.97
SF1-213ENST00000472725 MYO15BQ96JP2 1530 aa39.78■■■■□ 3.96
SF1-213ENST00000472725 RB1CC1Q8TDY2 1594 aa39.75■■■■□ 3.95
SF1-213ENST00000472725 DCAF1Q9Y4B6 1507 aa39.72■■■■□ 3.95
SF1-213ENST00000472725 DCAF8L2P0C7V8 631 aa39.68■■■■□ 3.94
SF1-213ENST00000472725 UNC13AQ9UPW8 1703 aa38.79■■■■□ 3.8
SF1-213ENST00000472725 SCRIBQ14160 1630 aa38.61■■■■□ 3.77
SF1-213ENST00000472725 BICRAQ9NZM4 1560 aa38.46■■■■□ 3.75
SF1-213ENST00000472725 PABPN1Q86U42 306 aaKnown RBP eCLIP38.33■■■■□ 3.73
SF1-213ENST00000472725 SHROOM4Q9ULL8 1493 aa38.27■■■■□ 3.72
SF1-213ENST00000472725 EIF4G1Q04637 1599 aaKnown RBP37.43■■■■□ 3.58
SF1-213ENST00000472725 DNAJC5BQ9UF47 199 aa37.22■■■■□ 3.55
SF1-213ENST00000472725 CC2D2AQ9P2K1 1620 aa37.17■■■■□ 3.54
SF1-213ENST00000472725 CECR2Q9BXF3 1484 aa37.14■■■■□ 3.54
SF1-213ENST00000472725 BAZ1AQ9NRL2 1556 aaPredicted RBP37.11■■■■□ 3.53
SF1-213ENST00000472725 SMARCA4P51532 1647 aa37.05■■■■□ 3.52
SF1-213ENST00000472725 MROH2BQ7Z745 1585 aa36.83■■■■□ 3.49
SF1-213ENST00000472725 SMARCA2P51531 1590 aa36.78■■■■□ 3.48
SF1-213ENST00000472725 PEG3Q9GZU2 1588 aa36.75■■■■□ 3.47
SF1-213ENST00000472725 ATAD2BQ9ULI0 1458 aa36.75■■■■□ 3.47
SF1-213ENST00000472725 NCAPD3P42695 1498 aa36.72■■■■□ 3.47
SF1-213ENST00000472725 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
SF1-213ENST00000472725 RSF1Q96T23 1441 aaPredicted RBP36.58■■■■□ 3.45
SF1-213ENST00000472725 BAZ1BQ9UIG0 1483 aaKnown RBP36.47■■■■□ 3.43
SF1-213ENST00000472725 WIZO95785 1651 aa36.45■■■■□ 3.42
SF1-213ENST00000472725 TOP2AP11388 1531 aaKnown RBP36.15■■■■□ 3.38
SF1-213ENST00000472725 SUPT5HO00267 1087 aaKnown RBP35.83■■■■□ 3.33
SF1-213ENST00000472725 LAMC3Q9Y6N6 1575 aa35.7■■■■□ 3.31
SF1-213ENST00000472725 CCDC88BA6NC98 1476 aa35.68■■■■□ 3.3
SF1-213ENST00000472725 CADPSQ9ULU8 1353 aa35.64■■■■□ 3.3
SF1-213ENST00000472725 NESP48681 1621 aa35.57■■■■□ 3.28
SF1-213ENST00000472725 CFTRP13569 1480 aa35.52■■■■□ 3.28
SF1-213ENST00000472725 PDS5BQ9NTI5 1447 aa35.43■■■■□ 3.26
SF1-213ENST00000472725 ERCC6Q03468 1493 aa35.35■■■■□ 3.25
SF1-213ENST00000472725 PRDM2Q13029 1718 aa35.33■■■■□ 3.25
SF1-213ENST00000472725 KIF21AQ7Z4S6 1674 aa35.23■■■■□ 3.23
SF1-213ENST00000472725 FANCD2Q9BXW9 1451 aa35.2■■■■□ 3.23
SF1-213ENST00000472725 CEP164Q9UPV0 1460 aa35.14■■■■□ 3.22
SF1-213ENST00000472725 THOC2Q8NI27 1593 aaKnown RBP35.04■■■■□ 3.2
SF1-213ENST00000472725 MRC2Q9UBG0 1479 aa35.01■■■■□ 3.19
SF1-213ENST00000472725 CUX2O14529 1486 aa34.94■■■■□ 3.18
SF1-213ENST00000472725 WDR62O43379 1518 aa34.9■■■■□ 3.18
SF1-213ENST00000472725 ABCC8Q09428 1581 aa34.83■■■■□ 3.17
SF1-213ENST00000472725 URB2Q14146 1524 aaKnown RBP34.79■■■■□ 3.16
SF1-213ENST00000472725 DNMBPQ6XZF7 1577 aa34.71■■■■□ 3.15
SF1-213ENST00000472725 TOPBP1Q92547 1522 aa34.68■■■■□ 3.14
SF1-213ENST00000472725 CUX1P39880 1505 aa34.54■■■■□ 3.12
SF1-213ENST00000472725 WRNQ14191 1432 aaPredicted RBP eCLIP34.49■■■■□ 3.11
SF1-213ENST00000472725 IFT140Q96RY7 1462 aa34.41■■■■□ 3.1
SF1-213ENST00000472725 TOP2BQ02880 1626 aa34.41■■■■□ 3.1
SF1-213ENST00000472725 BIVM-ERCC5R4GMW8 1640 aa34.41■■■■□ 3.1
SF1-213ENST00000472725 POLA1P09884 1462 aaPredicted RBP34.4■■■■□ 3.1
SF1-213ENST00000472725 FGD5Q6ZNL6 1462 aa34.37■■■■□ 3.09
SF1-213ENST00000472725 SYNJ1O43426 1573 aa34.34■■■■□ 3.09
SF1-213ENST00000472725 TARBP1Q13395 1621 aaKnown RBP34.29■■■■□ 3.08
SF1-213ENST00000472725 SOGA1O94964 1423 aa34.29■■■■□ 3.08
SF1-213ENST00000472725 RAD54L2Q9Y4B4 1467 aa34.19■■■■□ 3.06
SF1-213ENST00000472725 WDR97A6NE52 1622 aa34.17■■■■□ 3.06
SF1-213ENST00000472725 ABCA10Q8WWZ4 1543 aa34.11■■■■□ 3.05
SF1-213ENST00000472725 ZNF608Q9ULD9 1512 aaPredicted RBP34.11■■■■□ 3.05
SF1-213ENST00000472725 EIF4G3O43432 1585 aaKnown RBP34.05■■■■□ 3.04
SF1-213ENST00000472725 AQRO60306 1485 aaKnown RBP eCLIP33.98■■■■□ 3.03
SF1-213ENST00000472725 TDRD9Q8NDG6 1382 aaKnown RBP33.98■■■■□ 3.03
SF1-213ENST00000472725 ABCA5Q8WWZ7 1642 aa33.93■■■■□ 3.02
SF1-213ENST00000472725 TRIM41Q8WV44 630 aa33.92■■■■□ 3.02
SF1-213ENST00000472725 GAPVD1Q14C86 1478 aa33.91■■■■□ 3.02
SF1-213ENST00000472725 GRIN2BQ13224 1484 aa33.87■■■■□ 3.01
SF1-213ENST00000472725 PBRM1Q86U86 1689 aa33.8■■■■□ 3
SF1-213ENST00000472725 KIF27Q86VH2 1401 aa33.78■■■■□ 3
SF1-213ENST00000472725 MAGI1Q96QZ7 1491 aaPredicted RBP33.76■■■■□ 3
SF1-213ENST00000472725 ERICH3Q5RHP9 1530 aa33.74■■■□□ 2.99
SF1-213ENST00000472725 CHIC1Q5VXU3 224 aa33.73■■■□□ 2.99
SF1-213ENST00000472725 SNAPC4Q5SXM2 1469 aa33.7■■■□□ 2.99
SF1-213ENST00000472725 SYNJ2O15056 1496 aa33.6■■■□□ 2.97
SF1-213ENST00000472725 ADAMTS12P58397 1594 aa33.55■■■□□ 2.96
SF1-213ENST00000472725 FHAD1B1AJZ9 1412 aa33.55■■■□□ 2.96
SF1-213ENST00000472725 CHD1O14646 1710 aa33.55■■■□□ 2.96
SF1-213ENST00000472725 IGF1RP08069 1367 aa33.55■■■□□ 2.96
SF1-213ENST00000472725 CHMP7Q8WUX9 453 aaPredicted RBP33.52■■■□□ 2.96
SF1-213ENST00000472725 CUL7Q14999 1698 aa33.52■■■□□ 2.96
SF1-213ENST00000472725 OSCARQ8IYS5 282 aa33.51■■■□□ 2.95
SF1-213ENST00000472725 FBLN2P98095 1184 aa33.47■■■□□ 2.95
SF1-213ENST00000472725 EEA1Q15075 1411 aa33.45■■■□□ 2.95
SF1-213ENST00000472725 RUSC2Q8N2Y8 1516 aa33.44■■■□□ 2.94
SF1-213ENST00000472725 GRIN2AQ12879 1464 aa33.41■■■□□ 2.94
SF1-213ENST00000472725 CARMIL1Q5VZK9 1371 aa33.37■■■□□ 2.93
SF1-213ENST00000472725 DNAJC5Q9H3Z4 198 aa33.34■■■□□ 2.93
SF1-213ENST00000472725 NUP160Q12769 1436 aa33.27■■■□□ 2.92
SF1-213ENST00000472725 CSRNP3Q8WYN3 585 aa33.26■■■□□ 2.91
SF1-213ENST00000472725 RAPGEF2Q9Y4G8 1499 aa33.24■■■□□ 2.91
SF1-213ENST00000472725 CLASP1Q7Z460 1538 aa33.22■■■□□ 2.91
SF1-213ENST00000472725 PRXQ9BXM0 1461 aa33.21■■■□□ 2.91
SF1-213ENST00000472725 CEP170Q5SW79 1584 aa33.19■■■□□ 2.9
SF1-213ENST00000472725 FAM9AQ8IZU1 332 aaPredicted RBP33.07■■■□□ 2.88
SF1-213ENST00000472725 KIAA0586Q9BVV6 1533 aa33.06■■■□□ 2.88
SF1-213ENST00000472725 KIF21BO75037 1637 aa33.02■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms