RNA–Protein interactions for RNA: ENST00000463343.1

SF1-212, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 983 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-212ENST00000463343 NISCHQ9Y2I1 1504 aa42.84■■■■■ 4.45
SF1-212ENST00000463343 ABCC9O60706 1549 aa38.58■■■■□ 3.77
SF1-212ENST00000463343 CCDC180Q9P1Z9 1646 aa38.52■■■■□ 3.76
SF1-212ENST00000463343 RB1CC1Q8TDY2 1594 aa36.74■■■■□ 3.47
SF1-212ENST00000463343 NACADO15069 1562 aa36.5■■■■□ 3.43
SF1-212ENST00000463343 DNAJC5BQ9UF47 199 aa36.4■■■■□ 3.42
SF1-212ENST00000463343 DCAF8L2P0C7V8 631 aa36.13■■■■□ 3.37
SF1-212ENST00000463343 MYO15BQ96JP2 1530 aa36.03■■■■□ 3.36
SF1-212ENST00000463343 PABPN1Q86U42 306 aaKnown RBP eCLIP35.9■■■■□ 3.34
SF1-212ENST00000463343 UNC13AQ9UPW8 1703 aa35.83■■■■□ 3.33
SF1-212ENST00000463343 BICRAQ9NZM4 1560 aa35.65■■■■□ 3.3
SF1-212ENST00000463343 ZCCHC6Q5VYS8 1495 aaKnown RBP35.54■■■■□ 3.28
SF1-212ENST00000463343 DCAF1Q9Y4B6 1507 aa35.47■■■■□ 3.27
SF1-212ENST00000463343 SHROOM4Q9ULL8 1493 aa35.29■■■■□ 3.24
SF1-212ENST00000463343 SCRIBQ14160 1630 aa34.94■■■■□ 3.18
SF1-212ENST00000463343 CC2D2AQ9P2K1 1620 aa34.88■■■■□ 3.17
SF1-212ENST00000463343 CECR2Q9BXF3 1484 aa34.83■■■■□ 3.17
SF1-212ENST00000463343 EIF4G1Q04637 1599 aaKnown RBP34.79■■■■□ 3.16
SF1-212ENST00000463343 NCAPD3P42695 1498 aa33.73■■■□□ 2.99
SF1-212ENST00000463343 DNAJC5Q9H3Z4 198 aa33.66■■■□□ 2.98
SF1-212ENST00000463343 ATAD2BQ9ULI0 1458 aa33.53■■■□□ 2.96
SF1-212ENST00000463343 CUX2O14529 1486 aa33.44■■■□□ 2.94
SF1-212ENST00000463343 SMARCA2P51531 1590 aa33.44■■■□□ 2.94
SF1-212ENST00000463343 HMGXB3Q12766 1538 aa33.41■■■□□ 2.94
SF1-212ENST00000463343 SMARCA4P51532 1647 aa33.41■■■□□ 2.94
SF1-212ENST00000463343 ERCC6Q03468 1493 aa33.34■■■□□ 2.93
SF1-212ENST00000463343 BAZ1AQ9NRL2 1556 aaPredicted RBP33.27■■■□□ 2.92
SF1-212ENST00000463343 PEG3Q9GZU2 1588 aa33.18■■■□□ 2.9
SF1-212ENST00000463343 BAZ1BQ9UIG0 1483 aaKnown RBP33.16■■■□□ 2.9
SF1-212ENST00000463343 NESP48681 1621 aa33.09■■■□□ 2.89
SF1-212ENST00000463343 MROH2BQ7Z745 1585 aa32.95■■■□□ 2.86
SF1-212ENST00000463343 LAMC3Q9Y6N6 1575 aa32.95■■■□□ 2.86
SF1-212ENST00000463343 THOC2Q8NI27 1593 aaKnown RBP32.81■■■□□ 2.84
SF1-212ENST00000463343 PDS5BQ9NTI5 1447 aa32.78■■■□□ 2.84
SF1-212ENST00000463343 CADPSQ9ULU8 1353 aa32.67■■■□□ 2.82
SF1-212ENST00000463343 KIF21AQ7Z4S6 1674 aa32.64■■■□□ 2.82
SF1-212ENST00000463343 RSF1Q96T23 1441 aaPredicted RBP32.6■■■□□ 2.81
SF1-212ENST00000463343 WIZO95785 1651 aa32.52■■■□□ 2.8
SF1-212ENST00000463343 MRC2Q9UBG0 1479 aa32.45■■■□□ 2.79
SF1-212ENST00000463343 WDR62O43379 1518 aa32.37■■■□□ 2.77
SF1-212ENST00000463343 CEP164Q9UPV0 1460 aa32.28■■■□□ 2.76
SF1-212ENST00000463343 CFTRP13569 1480 aa32.25■■■□□ 2.75
SF1-212ENST00000463343 FANCD2Q9BXW9 1451 aa32.23■■■□□ 2.75
SF1-212ENST00000463343 TOP2AP11388 1531 aaKnown RBP32.16■■■□□ 2.74
SF1-212ENST00000463343 URB2Q14146 1524 aaKnown RBP31.95■■■□□ 2.71
SF1-212ENST00000463343 SUPT5HO00267 1087 aaKnown RBP31.95■■■□□ 2.71
SF1-212ENST00000463343 TRIM41Q8WV44 630 aa31.93■■■□□ 2.7
SF1-212ENST00000463343 OSCARQ8IYS5 282 aa31.92■■■□□ 2.7
SF1-212ENST00000463343 CCDC88BA6NC98 1476 aa31.86■■■□□ 2.69
SF1-212ENST00000463343 PRDM2Q13029 1718 aa31.84■■■□□ 2.69
SF1-212ENST00000463343 IFT140Q96RY7 1462 aa31.68■■■□□ 2.66
SF1-212ENST00000463343 ABCC8Q09428 1581 aa31.64■■■□□ 2.65
SF1-212ENST00000463343 TOPBP1Q92547 1522 aa31.59■■■□□ 2.65
SF1-212ENST00000463343 ZNF608Q9ULD9 1512 aaPredicted RBP31.56■■■□□ 2.64
SF1-212ENST00000463343 DNMBPQ6XZF7 1577 aa31.47■■■□□ 2.63
SF1-212ENST00000463343 RIMBP3CA6NJZ7 1639 aa31.39■■■□□ 2.62
SF1-212ENST00000463343 RIMBP3BA6NNM3 1639 aa31.39■■■□□ 2.62
SF1-212ENST00000463343 RIMBP3Q9UFD9 1639 aa31.39■■■□□ 2.62
SF1-212ENST00000463343 EIF4G3O43432 1585 aaKnown RBP31.36■■■□□ 2.61
SF1-212ENST00000463343 TARBP1Q13395 1621 aaKnown RBP31.34■■■□□ 2.61
SF1-212ENST00000463343 ARHGEF11O15085 1522 aa31.3■■■□□ 2.6
SF1-212ENST00000463343 AQRO60306 1485 aaKnown RBP eCLIP31.27■■■□□ 2.61e-18■■■■■ 38.5
SF1-212ENST00000463343 POLA1P09884 1462 aaPredicted RBP31.26■■■□□ 2.59
SF1-212ENST00000463343 SOGA1O94964 1423 aa31.15■■■□□ 2.58
SF1-212ENST00000463343 CHD1O14646 1710 aa31.15■■■□□ 2.58
SF1-212ENST00000463343 RAD54L2Q9Y4B4 1467 aa31.1■■■□□ 2.57
SF1-212ENST00000463343 CYB5RLQ6IPT4 315 aa31.1■■■□□ 2.57
SF1-212ENST00000463343 WDR97A6NE52 1622 aa31.09■■■□□ 2.57
SF1-212ENST00000463343 FBLN2P98095 1184 aa31.08■■■□□ 2.57
SF1-212ENST00000463343 TDRD9Q8NDG6 1382 aaKnown RBP31.06■■■□□ 2.56
SF1-212ENST00000463343 FGD5Q6ZNL6 1462 aa31.01■■■□□ 2.56
SF1-212ENST00000463343 ARAP1Q96P48 1450 aa30.97■■■□□ 2.55
SF1-212ENST00000463343 CUX1P39880 1505 aa30.96■■■□□ 2.55
SF1-212ENST00000463343 MAGI1Q96QZ7 1491 aaPredicted RBP30.94■■■□□ 2.54
SF1-212ENST00000463343 SNAPC4Q5SXM2 1469 aa30.93■■■□□ 2.54
SF1-212ENST00000463343 CHMP7Q8WUX9 453 aaPredicted RBP30.91■■■□□ 2.54
SF1-212ENST00000463343 GRIN2BQ13224 1484 aa30.9■■■□□ 2.54
SF1-212ENST00000463343 CLASP1Q7Z460 1538 aa30.87■■■□□ 2.53
SF1-212ENST00000463343 SYNJ1O43426 1573 aa30.83■■■□□ 2.53
SF1-212ENST00000463343 SYNJ2O15056 1496 aa30.82■■■□□ 2.52
SF1-212ENST00000463343 TRHP20396 242 aaPredicted RBP30.77■■■□□ 2.52
SF1-212ENST00000463343 GAPVD1Q14C86 1478 aa30.76■■■□□ 2.51
SF1-212ENST00000463343 ABCA10Q8WWZ4 1543 aa30.73■■■□□ 2.51
SF1-212ENST00000463343 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
SF1-212ENST00000463343 PBRM1Q86U86 1689 aa30.67■■■□□ 2.5
SF1-212ENST00000463343 ABCA5Q8WWZ7 1642 aa30.63■■■□□ 2.49
SF1-212ENST00000463343 TOP2BQ02880 1626 aa30.57■■■□□ 2.48
SF1-212ENST00000463343 BIVM-ERCC5R4GMW8 1640 aa30.54■■■□□ 2.48
SF1-212ENST00000463343 GRIN2AQ12879 1464 aa30.48■■■□□ 2.47
SF1-212ENST00000463343 NUP160Q12769 1436 aa30.42■■■□□ 2.46
SF1-212ENST00000463343 FHAD1B1AJZ9 1412 aa30.39■■■□□ 2.46
SF1-212ENST00000463343 ADAMTS12P58397 1594 aa30.39■■■□□ 2.46
SF1-212ENST00000463343 ERICH3Q5RHP9 1530 aa30.35■■■□□ 2.45
SF1-212ENST00000463343 CEP170Q5SW79 1584 aa30.32■■■□□ 2.45
SF1-212ENST00000463343 ERCC6L2Q5T890 1561 aa30.28■■■□□ 2.44
SF1-212ENST00000463343 SHROOM2Q13796 1616 aa30.28■■■□□ 2.44
SF1-212ENST00000463343 JPH4Q96JJ6 628 aa30.14■■■□□ 2.42
SF1-212ENST00000463343 PRG4Q92954 1404 aaPredicted RBP30.1■■■□□ 2.41
SF1-212ENST00000463343 KIF27Q86VH2 1401 aa30.05■■■□□ 2.4
SF1-212ENST00000463343 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms