RNA–Protein interactions for RNA: ENST00000392502.8

TRA2A-202, Transcript of transformer 2 alpha homolog, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRA2A, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-202ENST00000392502 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
TRA2A-202ENST00000392502 PELP1Q8IZL8 1130 aaKnown RBP28.57■■■□□ 2.16
TRA2A-202ENST00000392502 CCDC180Q9P1Z9 1646 aa28.46■■■□□ 2.15
TRA2A-202ENST00000392502 MYT1Q01538 1121 aa28.01■■■□□ 2.07
TRA2A-202ENST00000392502 SHROOM4Q9ULL8 1493 aa27.7■■■□□ 2.03
TRA2A-202ENST00000392502 ZCCHC6Q5VYS8 1495 aaKnown RBP27.69■■■□□ 2.02
TRA2A-202ENST00000392502 HRCP23327 699 aa27.45■■□□□ 1.99
TRA2A-202ENST00000392502 DCAF1Q9Y4B6 1507 aa27.25■■□□□ 1.95
TRA2A-202ENST00000392502 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
TRA2A-202ENST00000392502 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
TRA2A-202ENST00000392502 ABCC9O60706 1549 aa26.83■■□□□ 1.89
TRA2A-202ENST00000392502 TTBK1Q5TCY1 1321 aaPredicted RBP26.72■■□□□ 1.87
TRA2A-202ENST00000392502 MYO15BQ96JP2 1530 aa26.7■■□□□ 1.86
TRA2A-202ENST00000392502 SCAF1Q9H7N4 1312 aaKnown RBP26.28■■□□□ 1.8
TRA2A-202ENST00000392502 NACADO15069 1562 aa26.25■■□□□ 1.79
TRA2A-202ENST00000392502 PPARGC1BQ86YN6 1023 aaKnown RBP26.23■■□□□ 1.79
TRA2A-202ENST00000392502 SCRIBQ14160 1630 aa26.16■■□□□ 1.78
TRA2A-202ENST00000392502 CHIC1Q5VXU3 224 aa26.14■■□□□ 1.78
TRA2A-202ENST00000392502 RB1CC1Q8TDY2 1594 aa26.09■■□□□ 1.77
TRA2A-202ENST00000392502 PCGF6Q9BYE7 350 aa26.03■■□□□ 1.76
TRA2A-202ENST00000392502 ZEB1P37275 1124 aaPredicted RBP25.82■■□□□ 1.72
TRA2A-202ENST00000392502 RSF1Q96T23 1441 aaPredicted RBP25.78■■□□□ 1.72
TRA2A-202ENST00000392502 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
TRA2A-202ENST00000392502 ACIN1Q9UKV3 1341 aaKnown RBP25.57■■□□□ 1.68
TRA2A-202ENST00000392502 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
TRA2A-202ENST00000392502 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
TRA2A-202ENST00000392502 LOC105371045A0A1W2PR82 267 aa25.38■■□□□ 1.65
TRA2A-202ENST00000392502 CENPBP07199 599 aaPredicted RBP25.38■■□□□ 1.65
TRA2A-202ENST00000392502 TRIM26Q12899 539 aaPredicted RBP25.36■■□□□ 1.65
TRA2A-202ENST00000392502 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
TRA2A-202ENST00000392502 WIZO95785 1651 aa25.3■■□□□ 1.64
TRA2A-202ENST00000392502 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
TRA2A-202ENST00000392502 BCL11AQ9H165 835 aa25.24■■□□□ 1.63
TRA2A-202ENST00000392502 GTF3C3Q9Y5Q9 886 aa25.21■■□□□ 1.63
TRA2A-202ENST00000392502 NEUROD1Q13562 356 aa25.19■■□□□ 1.62
TRA2A-202ENST00000392502 PABPN1Q86U42 306 aaKnown RBP eCLIP25.18■■□□□ 1.62
TRA2A-202ENST00000392502 TRIM41Q8WV44 630 aa25.14■■□□□ 1.62
TRA2A-202ENST00000392502 SMARCA4P51532 1647 aa25.08■■□□□ 1.61
TRA2A-202ENST00000392502 ERICH6Q7L0X2 663 aa25.07■■□□□ 1.6
TRA2A-202ENST00000392502 PRKCSHP14314 528 aaPredicted RBP25.01■■□□□ 1.59
TRA2A-202ENST00000392502 FAM9AQ8IZU1 332 aaPredicted RBP24.97■■□□□ 1.59
TRA2A-202ENST00000392502 TOP2AP11388 1531 aaKnown RBP24.97■■□□□ 1.59
TRA2A-202ENST00000392502 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
TRA2A-202ENST00000392502 PEG3Q9GZU2 1588 aa24.83■■□□□ 1.57
TRA2A-202ENST00000392502 EHMT2Q96KQ7 1210 aa24.79■■□□□ 1.56
TRA2A-202ENST00000392502 CCDC88BA6NC98 1476 aa24.77■■□□□ 1.56
TRA2A-202ENST00000392502 ANP32EQ9BTT0 268 aa24.76■■□□□ 1.55
TRA2A-202ENST00000392502 SMARCA2P51531 1590 aa24.74■■□□□ 1.55
TRA2A-202ENST00000392502 APLP2Q06481 763 aa24.66■■□□□ 1.54
TRA2A-202ENST00000392502 ABCC8Q09428 1581 aa24.64■■□□□ 1.53
TRA2A-202ENST00000392502 DIEXFQ68CQ4 756 aaKnown RBP24.51■■□□□ 1.51
TRA2A-202ENST00000392502 CLSPNQ9HAW4 1339 aa24.5■■□□□ 1.51
TRA2A-202ENST00000392502 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
TRA2A-202ENST00000392502 BAZ1BQ9UIG0 1483 aaKnown RBP24.34■■□□□ 1.49
TRA2A-202ENST00000392502 SOGA1O94964 1423 aa24.34■■□□□ 1.49
TRA2A-202ENST00000392502 CC2D2AQ9P2K1 1620 aa24.31■■□□□ 1.48
TRA2A-202ENST00000392502 HMGXB3Q12766 1538 aa24.27■■□□□ 1.48
TRA2A-202ENST00000392502 RUSC2Q8N2Y8 1516 aa24.26■■□□□ 1.47
TRA2A-202ENST00000392502 EEA1Q15075 1411 aa24.25■■□□□ 1.47
TRA2A-202ENST00000392502 CSRNP3Q8WYN3 585 aa24.23■■□□□ 1.47
TRA2A-202ENST00000392502 WRNQ14191 1432 aaPredicted RBP eCLIP24.2■■□□□ 1.46
TRA2A-202ENST00000392502 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
TRA2A-202ENST00000392502 SYNJ1O43426 1573 aa24.15■■□□□ 1.46
TRA2A-202ENST00000392502 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
TRA2A-202ENST00000392502 TNIKQ9UKE5 1360 aa24.03■■□□□ 1.44
TRA2A-202ENST00000392502 TSHZ2Q9NRE2 1034 aa24.02■■□□□ 1.44
TRA2A-202ENST00000392502 DNAJC5BQ9UF47 199 aa24■■□□□ 1.43
TRA2A-202ENST00000392502 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
TRA2A-202ENST00000392502 PRDM2Q13029 1718 aa23.95■■□□□ 1.42
TRA2A-202ENST00000392502 BIVM-ERCC5R4GMW8 1640 aa23.95■■□□□ 1.42
TRA2A-202ENST00000392502 GOLGA3Q08378 1498 aa23.94■■□□□ 1.42
TRA2A-202ENST00000392502 CCER1Q8TC90 406 aaPredicted RBP23.93■■□□□ 1.42
TRA2A-202ENST00000392502 TOP2BQ02880 1626 aa23.93■■□□□ 1.42
TRA2A-202ENST00000392502 KIF21BO75037 1637 aa23.91■■□□□ 1.42
TRA2A-202ENST00000392502 ZNF316A6NFI3 1004 aaPredicted RBP23.9■■□□□ 1.42
TRA2A-202ENST00000392502 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
TRA2A-202ENST00000392502 SUPT16HQ9Y5B9 1047 aaKnown RBP23.86■■□□□ 1.41
TRA2A-202ENST00000392502 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
TRA2A-202ENST00000392502 YTHDC1Q96MU7 727 aaKnown RBP23.82■■□□□ 1.4
TRA2A-202ENST00000392502 CFTRP13569 1480 aa23.79■■□□□ 1.4
TRA2A-202ENST00000392502 RAPGEF2Q9Y4G8 1499 aa23.75■■□□□ 1.39
TRA2A-202ENST00000392502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.72■■□□□ 1.39
TRA2A-202ENST00000392502 CUX1P39880 1505 aa23.7■■□□□ 1.38
TRA2A-202ENST00000392502 CLIP1P30622 1438 aa23.67■■□□□ 1.38
TRA2A-202ENST00000392502 RANGAP1P46060 587 aaPredicted RBP23.63■■□□□ 1.37
TRA2A-202ENST00000392502 MIER1Q8N108 512 aa23.62■■□□□ 1.37
TRA2A-202ENST00000392502 ERICH3Q5RHP9 1530 aa23.62■■□□□ 1.37
TRA2A-202ENST00000392502 ERICH6BQ5W0A0 696 aa23.56■■□□□ 1.36
TRA2A-202ENST00000392502 PRXQ9BXM0 1461 aa23.53■■□□□ 1.36
TRA2A-202ENST00000392502 VPS8Q8N3P4 1428 aa23.53■■□□□ 1.36
TRA2A-202ENST00000392502 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
TRA2A-202ENST00000392502 UBE2Q2Q8WVN8 375 aa23.49■■□□□ 1.35
TRA2A-202ENST00000392502 KIF27Q86VH2 1401 aa23.46■■□□□ 1.35
TRA2A-202ENST00000392502 LAMC3Q9Y6N6 1575 aa23.45■■□□□ 1.35
TRA2A-202ENST00000392502 NESP48681 1621 aa23.44■■□□□ 1.34
TRA2A-202ENST00000392502 RBM19Q9Y4C8 960 aaKnown RBP23.39■■□□□ 1.33
TRA2A-202ENST00000392502 ARAP1Q96P48 1450 aa23.36■■□□□ 1.33
TRA2A-202ENST00000392502 ANO8Q9HCE9 1232 aaPredicted RBP23.36■■□□□ 1.33
TRA2A-202ENST00000392502 CUX2O14529 1486 aa23.33■■□□□ 1.32
TRA2A-202ENST00000392502 HNRNPUL2Q1KMD3 747 aaKnown RBP23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms