RNA–Protein interactions for RNA: ENST00000297071.8

TRA2A-201, Transcript of transformer 2 alpha homolog, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRA2A, Length 1,845 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-201ENST00000297071 NISCHQ9Y2I1 1504 aa38.81■■■■□ 3.8
TRA2A-201ENST00000297071 CCDC180Q9P1Z9 1646 aa33.12■■■□□ 2.89
TRA2A-201ENST00000297071 ZCCHC6Q5VYS8 1495 aaKnown RBP32.97■■■□□ 2.87
TRA2A-201ENST00000297071 SHROOM4Q9ULL8 1493 aa32.73■■■□□ 2.83
TRA2A-201ENST00000297071 SUPT5HO00267 1087 aaKnown RBP32.36■■■□□ 2.77
TRA2A-201ENST00000297071 DCAF1Q9Y4B6 1507 aa32.17■■■□□ 2.74
TRA2A-201ENST00000297071 CHIC1Q5VXU3 224 aa32.01■■■□□ 2.72
TRA2A-201ENST00000297071 MYO15BQ96JP2 1530 aa31.98■■■□□ 2.71
TRA2A-201ENST00000297071 HRCP23327 699 aa31.91■■■□□ 2.7
TRA2A-201ENST00000297071 PCGF6Q9BYE7 350 aa31.26■■■□□ 2.59
TRA2A-201ENST00000297071 ABCC9O60706 1549 aa31.24■■■□□ 2.59
TRA2A-201ENST00000297071 DCAF8L2P0C7V8 631 aa31.24■■■□□ 2.59
TRA2A-201ENST00000297071 TRIM26Q12899 539 aaPredicted RBP30.89■■■□□ 2.54
TRA2A-201ENST00000297071 LOC105371045A0A1W2PR82 267 aa30.79■■■□□ 2.52
TRA2A-201ENST00000297071 RSF1Q96T23 1441 aaPredicted RBP30.75■■■□□ 2.51
TRA2A-201ENST00000297071 PPARGC1BQ86YN6 1023 aaKnown RBP30.73■■■□□ 2.51
TRA2A-201ENST00000297071 RB1CC1Q8TDY2 1594 aa30.71■■■□□ 2.51
TRA2A-201ENST00000297071 ZEB1P37275 1124 aaPredicted RBP30.65■■■□□ 2.5
TRA2A-201ENST00000297071 SCRIBQ14160 1630 aa30.59■■■□□ 2.49
TRA2A-201ENST00000297071 DNAJC5BQ9UF47 199 aa30.57■■■□□ 2.48
TRA2A-201ENST00000297071 NACADO15069 1562 aa30.36■■■□□ 2.45
TRA2A-201ENST00000297071 TRIM41Q8WV44 630 aa30.33■■■□□ 2.45
TRA2A-201ENST00000297071 MROH2BQ7Z745 1585 aa30.04■■■□□ 2.4
TRA2A-201ENST00000297071 BAZ1AQ9NRL2 1556 aaPredicted RBP30.03■■■□□ 2.4
TRA2A-201ENST00000297071 PELP1Q8IZL8 1130 aaKnown RBP30.01■■■□□ 2.4
TRA2A-201ENST00000297071 EIF4G1Q04637 1599 aaKnown RBP30.01■■■□□ 2.39
TRA2A-201ENST00000297071 CECR2Q9BXF3 1484 aa29.97■■■□□ 2.39
TRA2A-201ENST00000297071 WIZO95785 1651 aa29.95■■■□□ 2.38
TRA2A-201ENST00000297071 FAM9AQ8IZU1 332 aaPredicted RBP29.76■■■□□ 2.35
TRA2A-201ENST00000297071 WRNQ14191 1432 aaPredicted RBP eCLIP29.67■■■□□ 2.34
TRA2A-201ENST00000297071 TOP2AP11388 1531 aaKnown RBP29.65■■■□□ 2.34
TRA2A-201ENST00000297071 SCAF1Q9H7N4 1312 aaKnown RBP29.53■■■□□ 2.32
TRA2A-201ENST00000297071 SMARCA4P51532 1647 aa29.5■■■□□ 2.31
TRA2A-201ENST00000297071 EEA1Q15075 1411 aa29.47■■■□□ 2.31
TRA2A-201ENST00000297071 SMARCA2P51531 1590 aa29.45■■■□□ 2.3
TRA2A-201ENST00000297071 DNAJC5Q9H3Z4 198 aa29.39■■■□□ 2.3
TRA2A-201ENST00000297071 TNIKQ9UKE5 1360 aa29.36■■■□□ 2.29
TRA2A-201ENST00000297071 CCDC88BA6NC98 1476 aa29.34■■■□□ 2.29
TRA2A-201ENST00000297071 UNC13AQ9UPW8 1703 aa29.32■■■□□ 2.28
TRA2A-201ENST00000297071 CCER1Q8TC90 406 aaPredicted RBP29.3■■■□□ 2.28
TRA2A-201ENST00000297071 CEP162Q5TB80 1403 aa29.29■■■□□ 2.28
TRA2A-201ENST00000297071 ABCC8Q09428 1581 aa29.29■■■□□ 2.28
TRA2A-201ENST00000297071 ACIN1Q9UKV3 1341 aaKnown RBP29.25■■■□□ 2.27
TRA2A-201ENST00000297071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.22■■■□□ 2.27
TRA2A-201ENST00000297071 EHMT2Q96KQ7 1210 aa29.2■■■□□ 2.27
TRA2A-201ENST00000297071 PEG3Q9GZU2 1588 aa29.1■■■□□ 2.25
TRA2A-201ENST00000297071 GOLGA3Q08378 1498 aa29.1■■■□□ 2.25
TRA2A-201ENST00000297071 CENPBP07199 599 aaPredicted RBP29.08■■■□□ 2.25
TRA2A-201ENST00000297071 DIEXFQ68CQ4 756 aaKnown RBP29.08■■■□□ 2.25
TRA2A-201ENST00000297071 SOGA1O94964 1423 aa29.07■■■□□ 2.24
TRA2A-201ENST00000297071 KIF21BO75037 1637 aa29.04■■■□□ 2.24
TRA2A-201ENST00000297071 CSRNP3Q8WYN3 585 aa29.03■■■□□ 2.24
TRA2A-201ENST00000297071 NEUROD1Q13562 356 aa28.98■■■□□ 2.23
TRA2A-201ENST00000297071 CEP164Q9UPV0 1460 aa28.91■■■□□ 2.22
TRA2A-201ENST00000297071 RUSC2Q8N2Y8 1516 aa28.88■■■□□ 2.21
TRA2A-201ENST00000297071 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
TRA2A-201ENST00000297071 ZNF316A6NFI3 1004 aaPredicted RBP28.85■■■□□ 2.21
TRA2A-201ENST00000297071 BICRAQ9NZM4 1560 aa28.79■■■□□ 2.2
TRA2A-201ENST00000297071 MYT1Q01538 1121 aa28.78■■■□□ 2.2
TRA2A-201ENST00000297071 SYNJ1O43426 1573 aa28.75■■■□□ 2.19
TRA2A-201ENST00000297071 GTF3C3Q9Y5Q9 886 aa28.75■■■□□ 2.19
TRA2A-201ENST00000297071 UBTFP17480 764 aaKnown RBP28.74■■■□□ 2.19
TRA2A-201ENST00000297071 VPS8Q8N3P4 1428 aa28.7■■■□□ 2.18
TRA2A-201ENST00000297071 CLIP1P30622 1438 aa28.64■■■□□ 2.18
TRA2A-201ENST00000297071 PABPN1Q86U42 306 aaKnown RBP eCLIP28.62■■■□□ 2.17
TRA2A-201ENST00000297071 TOP2BQ02880 1626 aa28.53■■■□□ 2.16
TRA2A-201ENST00000297071 CLSPNQ9HAW4 1339 aa28.53■■■□□ 2.16
TRA2A-201ENST00000297071 BIVM-ERCC5R4GMW8 1640 aa28.53■■■□□ 2.16
TRA2A-201ENST00000297071 ATAD2BQ9ULI0 1458 aa28.51■■■□□ 2.15
TRA2A-201ENST00000297071 ERICH3Q5RHP9 1530 aa28.5■■■□□ 2.15
TRA2A-201ENST00000297071 TTBK1Q5TCY1 1321 aaPredicted RBP28.48■■■□□ 2.15
TRA2A-201ENST00000297071 RAPGEF2Q9Y4G8 1499 aa28.42■■■□□ 2.14
TRA2A-201ENST00000297071 APLP2Q06481 763 aa28.34■■■□□ 2.13
TRA2A-201ENST00000297071 MIER1Q8N108 512 aa28.3■■■□□ 2.12
TRA2A-201ENST00000297071 HNRNPUL2Q1KMD3 747 aaKnown RBP28.29■■■□□ 2.12
TRA2A-201ENST00000297071 PRXQ9BXM0 1461 aa28.29■■■□□ 2.12
TRA2A-201ENST00000297071 CUX2O14529 1486 aa28.23■■■□□ 2.11
TRA2A-201ENST00000297071 ARAP1Q96P48 1450 aa28.2■■■□□ 2.11
TRA2A-201ENST00000297071 DHX57Q6P158 1386 aaKnown RBP28.17■■■□□ 2.1
TRA2A-201ENST00000297071 RRBP1Q9P2E9 1410 aaKnown RBP28.17■■■□□ 2.1
TRA2A-201ENST00000297071 HMGXB3Q12766 1538 aa28.14■■■□□ 2.09
TRA2A-201ENST00000297071 YTHDC1Q96MU7 727 aaKnown RBP28.07■■■□□ 2.08
TRA2A-201ENST00000297071 PRDM2Q13029 1718 aa28.03■■■□□ 2.08
TRA2A-201ENST00000297071 CC2D2AQ9P2K1 1620 aa28.02■■■□□ 2.08
TRA2A-201ENST00000297071 MAP3K1Q13233 1512 aa28■■■□□ 2.07
TRA2A-201ENST00000297071 KIF27Q86VH2 1401 aa27.99■■■□□ 2.07
TRA2A-201ENST00000297071 CUX1P39880 1505 aa27.98■■■□□ 2.07
TRA2A-201ENST00000297071 NCAPD3P42695 1498 aa27.97■■■□□ 2.07
TRA2A-201ENST00000297071 ARHGAP35Q9NRY4 1499 aa27.86■■■□□ 2.05
TRA2A-201ENST00000297071 CCNB3Q8WWL7 1395 aa27.86■■■□□ 2.05
TRA2A-201ENST00000297071 CFTRP13569 1480 aa27.85■■■□□ 2.05
TRA2A-201ENST00000297071 KANK4Q5T7N3 995 aaPredicted RBP27.82■■■□□ 2.04
TRA2A-201ENST00000297071 TIAM1Q13009 1591 aa27.77■■■□□ 2.04
TRA2A-201ENST00000297071 MAPKBP1O60336 1514 aa27.7■■■□□ 2.02
TRA2A-201ENST00000297071 SUPT16HQ9Y5B9 1047 aaKnown RBP27.69■■■□□ 2.02
TRA2A-201ENST00000297071 CFAP43Q8NDM7 1665 aa27.69■■■□□ 2.02
TRA2A-201ENST00000297071 RANGAP1P46060 587 aaPredicted RBP27.64■■■□□ 2.01
TRA2A-201ENST00000297071 RAB3GAP2Q9H2M9 1393 aa27.6■■■□□ 2.01
TRA2A-201ENST00000297071 TIMELESSQ9UNS1 1208 aa27.6■■■□□ 2.01
TRA2A-201ENST00000297071 LRRC9Q6ZRR7 1453 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms