Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.571e-6■■□□□ 12.3
CDC40O60508 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.69■■□□□ 1.541e-6■■□□□ 12.3
CDC40O60508 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.34■■□□□ 1.491e-6■■□□□ 12.3
CDC40O60508 FTCD-212ENST00000498355 1936 ntTSL 224.27■■□□□ 1.481e-6■■□□□ 12.3
CDC40O60508 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.311e-6■■□□□ 12.3
CDC40O60508 FTCD-210ENST00000488577 447 ntTSL 317.91■□□□□ 0.461e-6■■□□□ 12.3
CDC40O60508 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.962e-9■■□□□ 12.3
CDC40O60508 LRMDA-210ENST00000593817 221 ntTSL 34.7□□□□□ -1.662e-9■■□□□ 12.3
CDC40O60508 SLC22A31-204ENST00000568161 651 ntTSL 313.54□□□□□ -0.245e-10■■□□□ 12.2
CDC40O60508 NCL-202ENST00000356936 890 ntTSL 315.84■□□□□ 0.134e-14■■□□□ 12.2
CDC40O60508 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.81■□□□□ 0.61e-6■■□□□ 12.2
CDC40O60508 ERF-203ENST00000593944 555 ntTSL 417.32■□□□□ 0.361e-6■■□□□ 12.2
CDC40O60508 ERF-205ENST00000595941 227 ntTSL 47.46□□□□□ -1.221e-6■■□□□ 12.2
CDC40O60508 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.015e-8■■□□□ 12.2
CDC40O60508 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.51■□□□□ 0.875e-8■■□□□ 12.2
CDC40O60508 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)20.45■□□□□ 0.865e-8■■□□□ 12.2
CDC40O60508 SNRNP70-209ENST00000601065 1757 ntTSL 320.05■□□□□ 0.85e-8■■□□□ 12.2
CDC40O60508 SNRNP70-202ENST00000401730 3144 ntTSL 215.48■□□□□ 0.075e-8■■□□□ 12.2
CDC40O60508 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.52e-6■■□□□ 12.2
CDC40O60508 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.232e-6■■□□□ 12.2
CDC40O60508 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.95■□□□□ 0.463e-7■■□□□ 12.2
CDC40O60508 SLC12A4-212ENST00000573023 3649 ntTSL 517.3■□□□□ 0.363e-7■■□□□ 12.2
CDC40O60508 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.323e-7■■□□□ 12.2
CDC40O60508 SLC12A4-210ENST00000572476 573 ntTSL 513.67□□□□□ -0.223e-7■■□□□ 12.2
CDC40O60508 SLC12A4-218ENST00000576513 412 ntTSL 512.24□□□□□ -0.453e-7■■□□□ 12.2
CDC40O60508 SLC12A4-211ENST00000572766 515 ntTSL 411.92□□□□□ -0.53e-7■■□□□ 12.2
CDC40O60508 SLC12A4-214ENST00000574665 847 ntTSL 511.13□□□□□ -0.633e-7■■□□□ 12.2
CDC40O60508 SLC12A4-203ENST00000537830 3525 ntTSL 2 BASIC10.92□□□□□ -0.663e-7■■□□□ 12.2
CDC40O60508 SLC12A4-209ENST00000572037 3620 ntTSL 2 BASIC10.72□□□□□ -0.693e-7■■□□□ 12.2
CDC40O60508 SLC12A4-204ENST00000541864 3627 ntTSL 2 BASIC10.72□□□□□ -0.693e-7■■□□□ 12.2
CDC40O60508 SLC12A4-219ENST00000576616 3768 ntTSL 2 BASIC10.3□□□□□ -0.763e-7■■□□□ 12.2
CDC40O60508 SLC12A4-206ENST00000570802 3761 ntTSL 210.01□□□□□ -0.813e-7■■□□□ 12.2
CDC40O60508 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.676e-6■■□□□ 12.2
CDC40O60508 SEPT9-241ENST00000591934 553 ntTSL 416.03■□□□□ 0.166e-6■■□□□ 12.2
CDC40O60508 SEPT9-231ENST00000590595 569 ntTSL 314.77□□□□□ -0.056e-6■■□□□ 12.2
CDC40O60508 SEPT9-242ENST00000592098 503 ntTSL 412.22□□□□□ -0.456e-6■■□□□ 12.2
CDC40O60508 PRPF8-203ENST00000571958 380 ntTSL 39.39□□□□□ -0.914e-10■■□□□ 12.2
CDC40O60508 ACAP3-208ENST00000472541 1946 ntTSL 517.6■□□□□ 0.419e-8■■□□□ 12.2
CDC40O60508 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.319e-8■■□□□ 12.2
CDC40O60508 ACAP3-211ENST00000479108 485 ntTSL 314.2□□□□□ -0.149e-8■■□□□ 12.2
CDC40O60508 ACAP3-203ENST00000354980 582 ntTSL 512.7□□□□□ -0.389e-8■■□□□ 12.2
CDC40O60508 C2orf72-202ENST00000463834 3141 ntTSL 1 (best)10.63□□□□□ -0.713e-7■■□□□ 12.2
CDC40O60508 ACAP3-205ENST00000438966 265 ntTSL 36.87□□□□□ -1.319e-8■■□□□ 12.2
CDC40O60508 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.773e-6■■□□□ 12.1
CDC40O60508 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.56■□□□□ 0.723e-6■■□□□ 12.1
CDC40O60508 PTP4A3-205ENST00000523147 558 ntTSL 519.45■□□□□ 0.73e-6■■□□□ 12.1
CDC40O60508 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC9.17□□□□□ -0.943e-8■■□□□ 12.1
CDC40O60508 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.443e-8■■□□□ 12.1
CDC40O60508 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.312e-6■■□□□ 12.1
CDC40O60508 SSUH2-205ENST00000420394 1634 ntTSL 1 (best)18.63■□□□□ 0.573e-8■■□□□ 12.1
CDC40O60508 SSUH2-204ENST00000415132 1645 ntTSL 517.69■□□□□ 0.423e-8■■□□□ 12.1
CDC40O60508 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.283e-8■■□□□ 12.1
CDC40O60508 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.02□□□□□ -0.013e-8■■□□□ 12.1
CDC40O60508 RPS6KA3-202ENST00000438357 530 ntTSL 513.85□□□□□ -0.191e-10■■□□□ 12.1
CDC40O60508 TOX4-205ENST00000455393 2000 ntTSL 212.5□□□□□ -0.413e-8■■□□□ 12.1
CDC40O60508 CPSF6-204ENST00000547486 872 ntTSL 212.38□□□□□ -0.433e-8■■□□□ 12.1
CDC40O60508 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC11.66□□□□□ -0.543e-8■■□□□ 12.1
CDC40O60508 SSUH2-207ENST00000435138 2632 ntTSL 211.51□□□□□ -0.573e-8■■□□□ 12.1
CDC40O60508 SSUH2-201ENST00000317371 2561 ntAPPRIS P3 TSL 2 BASIC11.14□□□□□ -0.633e-8■■□□□ 12.1
CDC40O60508 SSUH2-210ENST00000466215 492 ntTSL 310.45□□□□□ -0.743e-8■■□□□ 12.1
CDC40O60508 SSUH2-208ENST00000455157 3219 ntTSL 210.29□□□□□ -0.763e-8■■□□□ 12.1
CDC40O60508 TOX4-203ENST00000448790 4534 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.863e-8■■□□□ 12.1
CDC40O60508 TOX4-211ENST00000613005 3633 ntTSL 29.56□□□□□ -0.883e-8■■□□□ 12.1
CDC40O60508 TOX4-212ENST00000613569 4711 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.923e-8■■□□□ 12.1
CDC40O60508 RPS6KA3-206ENST00000492128 553 ntTSL 49.1□□□□□ -0.951e-10■■□□□ 12.1
CDC40O60508 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.223e-8■■□□□ 12.1
CDC40O60508 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.02□□□□□ -2.093e-8■■□□□ 12.1
CDC40O60508 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.293e-10■■□□□ 12
CDC40O60508 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.56e-10■■□□□ 12
CDC40O60508 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.016e-10■■□□□ 12
CDC40O60508 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.086e-10■■□□□ 12
CDC40O60508 ACSF2-218ENST00000510410 1745 ntTSL 222.46■■□□□ 1.195e-6■■□□□ 12
CDC40O60508 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.84■□□□□ 0.935e-6■■□□□ 12
CDC40O60508 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.05■□□□□ 0.85e-6■■□□□ 12
CDC40O60508 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.265e-6■■□□□ 12
CDC40O60508 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.55□□□□□ -0.245e-6■■□□□ 12
CDC40O60508 ACSF2-214ENST00000508245 665 ntTSL 511.37□□□□□ -0.595e-6■■□□□ 12
CDC40O60508 ACSF2-223ENST00000513101 564 ntTSL 47.96□□□□□ -1.145e-6■■□□□ 12
CDC40O60508 ACSF2-217ENST00000510262 407 ntTSL 57.93□□□□□ -1.145e-6■■□□□ 12
CDC40O60508 SLC16A3-218ENST00000583444 2882 nt17.22■□□□□ 0.351e-6■■□□□ 12
CDC40O60508 NPM1-211ENST00000523622 247 ntTSL 35.57□□□□□ -1.524e-10■■□□□ 11.9
CDC40O60508 NPM1-210ENST00000523339 268 ntTSL 23.65□□□□□ -1.834e-10■■□□□ 11.9
CDC40O60508 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.65■■□□□ 1.866e-7■■□□□ 11.9
CDC40O60508 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.4■■□□□ 1.826e-7■■□□□ 11.9
CDC40O60508 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.13■■□□□ 1.776e-7■■□□□ 11.9
CDC40O60508 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.13■■□□□ 1.776e-7■■□□□ 11.9
CDC40O60508 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.74■□□□□ 0.916e-7■■□□□ 11.9
CDC40O60508 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.68■□□□□ 0.586e-7■■□□□ 11.9
CDC40O60508 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC11.16□□□□□ -0.625e-7■■□□□ 11.9
CDC40O60508 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.241e-6■■□□□ 11.9
CDC40O60508 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.491e-6■■□□□ 11.9
CDC40O60508 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.241e-6■■□□□ 11.9
CDC40O60508 ANKRD17-207ENST00000558247 8456 ntAPPRIS ALT2 TSL 1 (best)6.12□□□□□ -1.431e-6■■□□□ 11.9
CDC40O60508 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.7■□□□□ 0.266e-11■■□□□ 11.9
CDC40O60508 POLR3E-211ENST00000564750 2327 ntTSL 215.74■□□□□ 0.116e-11■■□□□ 11.9
CDC40O60508 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.43■□□□□ 0.066e-11■■□□□ 11.9
CDC40O60508 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.39■□□□□ 0.056e-11■■□□□ 11.9
CDC40O60508 POLR3E-208ENST00000564061 4800 ntTSL 1 (best)11.77□□□□□ -0.536e-11■■□□□ 11.9
CDC40O60508 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.616e-11■■□□□ 11.9
CDC40O60508 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC11.23□□□□□ -0.616e-11■■□□□ 11.9
Retrieved 100 of 5,364 protein–RNA pairs in 52.4 ms