RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 NISCHQ9Y2I1 1504 aa33.19■■■□□ 2.9
CPSF6-204ENST00000547486 ABCC9O60706 1549 aa29.59■■■□□ 2.33
CPSF6-204ENST00000547486 CCDC180Q9P1Z9 1646 aa29.57■■■□□ 2.32
CPSF6-204ENST00000547486 RB1CC1Q8TDY2 1594 aa28.14■■■□□ 2.1
CPSF6-204ENST00000547486 DCAF8L2P0C7V8 631 aa28.07■■■□□ 2.08
CPSF6-204ENST00000547486 NACADO15069 1562 aa28■■■□□ 2.07
CPSF6-204ENST00000547486 DNAJC5BQ9UF47 199 aa27.76■■■□□ 2.03
CPSF6-204ENST00000547486 MYO15BQ96JP2 1530 aa27.67■■■□□ 2.02
CPSF6-204ENST00000547486 PABPN1Q86U42 306 aaKnown RBP eCLIP27.67■■■□□ 2.02
CPSF6-204ENST00000547486 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
CPSF6-204ENST00000547486 UNC13AQ9UPW8 1703 aa27.46■■□□□ 1.99
CPSF6-204ENST00000547486 DCAF1Q9Y4B6 1507 aa27.38■■□□□ 1.97
CPSF6-204ENST00000547486 BICRAQ9NZM4 1560 aa27.38■■□□□ 1.97
CPSF6-204ENST00000547486 SCRIBQ14160 1630 aa27.05■■□□□ 1.92
CPSF6-204ENST00000547486 SHROOM4Q9ULL8 1493 aa26.93■■□□□ 1.9
CPSF6-204ENST00000547486 CC2D2AQ9P2K1 1620 aa26.68■■□□□ 1.86
CPSF6-204ENST00000547486 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
CPSF6-204ENST00000547486 CECR2Q9BXF3 1484 aa26.62■■□□□ 1.85
CPSF6-204ENST00000547486 NCAPD3P42695 1498 aa25.92■■□□□ 1.74
CPSF6-204ENST00000547486 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
CPSF6-204ENST00000547486 SMARCA4P51532 1647 aa25.81■■□□□ 1.72
CPSF6-204ENST00000547486 SMARCA2P51531 1590 aa25.72■■□□□ 1.71
CPSF6-204ENST00000547486 BAZ1AQ9NRL2 1556 aaPredicted RBP25.71■■□□□ 1.71
CPSF6-204ENST00000547486 HMGXB3Q12766 1538 aa25.65■■□□□ 1.7
CPSF6-204ENST00000547486 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
CPSF6-204ENST00000547486 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.69
CPSF6-204ENST00000547486 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
CPSF6-204ENST00000547486 NESP48681 1621 aa25.48■■□□□ 1.67
CPSF6-204ENST00000547486 ERCC6Q03468 1493 aa25.48■■□□□ 1.67
CPSF6-204ENST00000547486 CUX2O14529 1486 aa25.36■■□□□ 1.65
CPSF6-204ENST00000547486 DNAJC5Q9H3Z4 198 aa25.3■■□□□ 1.64
CPSF6-204ENST00000547486 WIZO95785 1651 aa25.26■■□□□ 1.63
CPSF6-204ENST00000547486 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
CPSF6-204ENST00000547486 RSF1Q96T23 1441 aaPredicted RBP25.16■■□□□ 1.62
CPSF6-204ENST00000547486 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
CPSF6-204ENST00000547486 PDS5BQ9NTI5 1447 aa25.13■■□□□ 1.61
CPSF6-204ENST00000547486 THOC2Q8NI27 1593 aaKnown RBP25.09■■□□□ 1.61
CPSF6-204ENST00000547486 KIF21AQ7Z4S6 1674 aa25.04■■□□□ 1.6
CPSF6-204ENST00000547486 TOP2AP11388 1531 aaKnown RBP24.93■■□□□ 1.58
CPSF6-204ENST00000547486 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.57
CPSF6-204ENST00000547486 CFTRP13569 1480 aa24.88■■□□□ 1.57
CPSF6-204ENST00000547486 FANCD2Q9BXW9 1451 aa24.84■■□□□ 1.57
CPSF6-204ENST00000547486 CEP164Q9UPV0 1460 aa24.81■■□□□ 1.56
CPSF6-204ENST00000547486 WDR62O43379 1518 aa24.81■■□□□ 1.56
CPSF6-204ENST00000547486 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
CPSF6-204ENST00000547486 URB2Q14146 1524 aaKnown RBP24.64■■□□□ 1.53
CPSF6-204ENST00000547486 PRDM2Q13029 1718 aa24.45■■□□□ 1.5
CPSF6-204ENST00000547486 TOPBP1Q92547 1522 aa24.38■■□□□ 1.49
CPSF6-204ENST00000547486 OSCARQ8IYS5 282 aa24.34■■□□□ 1.49
CPSF6-204ENST00000547486 ZNF608Q9ULD9 1512 aaPredicted RBP24.33■■□□□ 1.49
CPSF6-204ENST00000547486 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
CPSF6-204ENST00000547486 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
CPSF6-204ENST00000547486 DNMBPQ6XZF7 1577 aa24.25■■□□□ 1.47
CPSF6-204ENST00000547486 TRIM41Q8WV44 630 aa24.25■■□□□ 1.47
CPSF6-204ENST00000547486 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
CPSF6-204ENST00000547486 AQRO60306 1485 aaKnown RBP eCLIP24.15■■□□□ 1.469e-8■■■■■ 30.5
CPSF6-204ENST00000547486 POLA1P09884 1462 aaPredicted RBP24.14■■□□□ 1.46
CPSF6-204ENST00000547486 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
CPSF6-204ENST00000547486 RAD54L2Q9Y4B4 1467 aa24.11■■□□□ 1.45
CPSF6-204ENST00000547486 EIF4G3O43432 1585 aaKnown RBP24.1■■□□□ 1.45
CPSF6-204ENST00000547486 SOGA1O94964 1423 aa24.08■■□□□ 1.44
CPSF6-204ENST00000547486 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
CPSF6-204ENST00000547486 CUX1P39880 1505 aa24.04■■□□□ 1.44
CPSF6-204ENST00000547486 FGD5Q6ZNL6 1462 aa24.01■■□□□ 1.43
CPSF6-204ENST00000547486 FBLN2P98095 1184 aa23.97■■□□□ 1.43
CPSF6-204ENST00000547486 RIMBP3CA6NJZ7 1639 aa23.9■■□□□ 1.42
CPSF6-204ENST00000547486 RIMBP3BA6NNM3 1639 aa23.9■■□□□ 1.42
CPSF6-204ENST00000547486 RIMBP3Q9UFD9 1639 aa23.9■■□□□ 1.42
CPSF6-204ENST00000547486 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
CPSF6-204ENST00000547486 CHD1O14646 1710 aa23.86■■□□□ 1.41
CPSF6-204ENST00000547486 SNAPC4Q5SXM2 1469 aa23.85■■□□□ 1.41
CPSF6-204ENST00000547486 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
CPSF6-204ENST00000547486 CHMP7Q8WUX9 453 aaPredicted RBP23.8■■□□□ 1.4
CPSF6-204ENST00000547486 GRIN2BQ13224 1484 aa23.8■■□□□ 1.4
CPSF6-204ENST00000547486 CYB5RLQ6IPT4 315 aa23.79■■□□□ 1.4
CPSF6-204ENST00000547486 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
CPSF6-204ENST00000547486 MAGI1Q96QZ7 1491 aaPredicted RBP23.75■■□□□ 1.39
CPSF6-204ENST00000547486 ABCA10Q8WWZ4 1543 aa23.74■■□□□ 1.39
CPSF6-204ENST00000547486 SYNJ2O15056 1496 aa23.7■■□□□ 1.38
CPSF6-204ENST00000547486 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
CPSF6-204ENST00000547486 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
CPSF6-204ENST00000547486 CLASP1Q7Z460 1538 aa23.65■■□□□ 1.38
CPSF6-204ENST00000547486 ABCA5Q8WWZ7 1642 aa23.65■■□□□ 1.38
CPSF6-204ENST00000547486 SYNJ1O43426 1573 aa23.65■■□□□ 1.38
CPSF6-204ENST00000547486 TOP2BQ02880 1626 aa23.64■■□□□ 1.38
CPSF6-204ENST00000547486 PBRM1Q86U86 1689 aa23.62■■□□□ 1.37
CPSF6-204ENST00000547486 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
CPSF6-204ENST00000547486 GRIN2AQ12879 1464 aa23.49■■□□□ 1.35
CPSF6-204ENST00000547486 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
CPSF6-204ENST00000547486 ADAMTS12P58397 1594 aa23.45■■□□□ 1.34
CPSF6-204ENST00000547486 TRHP20396 242 aaPredicted RBP23.44■■□□□ 1.34
CPSF6-204ENST00000547486 NUP160Q12769 1436 aa23.42■■□□□ 1.34
CPSF6-204ENST00000547486 ERICH3Q5RHP9 1530 aa23.42■■□□□ 1.34
CPSF6-204ENST00000547486 CEP170Q5SW79 1584 aa23.4■■□□□ 1.34
CPSF6-204ENST00000547486 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
CPSF6-204ENST00000547486 IGF1RP08069 1367 aa23.28■■□□□ 1.32
CPSF6-204ENST00000547486 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
CPSF6-204ENST00000547486 SHROOM2Q13796 1616 aa23.24■■□□□ 1.31
CPSF6-204ENST00000547486 KIF27Q86VH2 1401 aa23.23■■□□□ 1.31
CPSF6-204ENST00000547486 PRG4Q92954 1404 aaPredicted RBP23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms