RNA–Protein interactions for RNA: ENST00000356936.5

NCL-202, Transcript of nucleolin, humanhuman

TSL 3

Gene NCL, Length 890 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-202ENST00000356936 NISCHQ9Y2I1 1504 aa42.04■■■■■ 4.32
NCL-202ENST00000356936 CCDC180Q9P1Z9 1646 aa37.49■■■■□ 3.59
NCL-202ENST00000356936 ABCC9O60706 1549 aa36.9■■■■□ 3.5
NCL-202ENST00000356936 RB1CC1Q8TDY2 1594 aa35.44■■■■□ 3.26
NCL-202ENST00000356936 NACADO15069 1562 aa35.34■■■■□ 3.25
NCL-202ENST00000356936 DCAF8L2P0C7V8 631 aa35.25■■■■□ 3.23
NCL-202ENST00000356936 MYO15BQ96JP2 1530 aa35.07■■■■□ 3.21
NCL-202ENST00000356936 ZCCHC6Q5VYS8 1495 aaKnown RBP34.96■■■■□ 3.19
NCL-202ENST00000356936 DCAF1Q9Y4B6 1507 aa34.81■■■■□ 3.16
NCL-202ENST00000356936 UNC13AQ9UPW8 1703 aa34.5■■■■□ 3.11
NCL-202ENST00000356936 PABPN1Q86U42 306 aaKnown RBP eCLIP34.45■■■■□ 3.11
NCL-202ENST00000356936 BICRAQ9NZM4 1560 aa34.3■■■■□ 3.08
NCL-202ENST00000356936 SCRIBQ14160 1630 aa34.15■■■■□ 3.06
NCL-202ENST00000356936 DNAJC5BQ9UF47 199 aa34.07■■■■□ 3.04
NCL-202ENST00000356936 SHROOM4Q9ULL8 1493 aa34.05■■■■□ 3.04
NCL-202ENST00000356936 EIF4G1Q04637 1599 aaKnown RBP33.46■■■□□ 2.95
NCL-202ENST00000356936 CC2D2AQ9P2K1 1620 aa33.37■■■□□ 2.93
NCL-202ENST00000356936 CECR2Q9BXF3 1484 aa33.22■■■□□ 2.91
NCL-202ENST00000356936 SMARCA4P51532 1647 aa32.66■■■□□ 2.82
NCL-202ENST00000356936 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
NCL-202ENST00000356936 NCAPD3P42695 1498 aa32.61■■■□□ 2.81
NCL-202ENST00000356936 ATAD2BQ9ULI0 1458 aa32.56■■■□□ 2.8
NCL-202ENST00000356936 SMARCA2P51531 1590 aa32.54■■■□□ 2.8
NCL-202ENST00000356936 HMGXB3Q12766 1538 aa32.42■■■□□ 2.78
NCL-202ENST00000356936 PEG3Q9GZU2 1588 aa32.36■■■□□ 2.77
NCL-202ENST00000356936 MROH2BQ7Z745 1585 aa32.36■■■□□ 2.77
NCL-202ENST00000356936 BAZ1BQ9UIG0 1483 aaKnown RBP32.3■■■□□ 2.76
NCL-202ENST00000356936 WIZO95785 1651 aa31.98■■■□□ 2.71
NCL-202ENST00000356936 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
NCL-202ENST00000356936 ERCC6Q03468 1493 aa31.9■■■□□ 2.7
NCL-202ENST00000356936 NESP48681 1621 aa31.83■■■□□ 2.69
NCL-202ENST00000356936 LAMC3Q9Y6N6 1575 aa31.79■■■□□ 2.68
NCL-202ENST00000356936 TOP2AP11388 1531 aaKnown RBP31.68■■■□□ 2.66
NCL-202ENST00000356936 CUX2O14529 1486 aa31.65■■■□□ 2.66
NCL-202ENST00000356936 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
NCL-202ENST00000356936 PDS5BQ9NTI5 1447 aa31.62■■■□□ 2.65
NCL-202ENST00000356936 KIF21AQ7Z4S6 1674 aa31.43■■■□□ 2.62
NCL-202ENST00000356936 THOC2Q8NI27 1593 aaKnown RBP31.42■■■□□ 2.62
NCL-202ENST00000356936 CFTRP13569 1480 aa31.4■■■□□ 2.62
NCL-202ENST00000356936 CCDC88BA6NC98 1476 aa31.29■■■□□ 2.6
NCL-202ENST00000356936 FANCD2Q9BXW9 1451 aa31.27■■■□□ 2.6
NCL-202ENST00000356936 MRC2Q9UBG0 1479 aa31.27■■■□□ 2.6
NCL-202ENST00000356936 CEP164Q9UPV0 1460 aa31.27■■■□□ 2.6
NCL-202ENST00000356936 WDR62O43379 1518 aa31.16■■■□□ 2.58
NCL-202ENST00000356936 PRDM2Q13029 1718 aa31.07■■■□□ 2.56
NCL-202ENST00000356936 DNAJC5Q9H3Z4 198 aa30.97■■■□□ 2.55
NCL-202ENST00000356936 URB2Q14146 1524 aaKnown RBP30.94■■■□□ 2.54
NCL-202ENST00000356936 SUPT5HO00267 1087 aaKnown RBP30.93■■■□□ 2.54
NCL-202ENST00000356936 ABCC8Q09428 1581 aa30.79■■■□□ 2.52
NCL-202ENST00000356936 TOPBP1Q92547 1522 aa30.73■■■□□ 2.51
NCL-202ENST00000356936 DNMBPQ6XZF7 1577 aa30.67■■■□□ 2.5
NCL-202ENST00000356936 IFT140Q96RY7 1462 aa30.63■■■□□ 2.49
NCL-202ENST00000356936 ZNF608Q9ULD9 1512 aaPredicted RBP30.46■■■□□ 2.47
NCL-202ENST00000356936 POLA1P09884 1462 aaPredicted RBP30.44■■■□□ 2.46
NCL-202ENST00000356936 TARBP1Q13395 1621 aaKnown RBP30.38■■■□□ 2.45
NCL-202ENST00000356936 CUX1P39880 1505 aa30.37■■■□□ 2.45
NCL-202ENST00000356936 SOGA1O94964 1423 aa30.35■■■□□ 2.45
NCL-202ENST00000356936 EIF4G3O43432 1585 aaKnown RBP30.33■■■□□ 2.45
NCL-202ENST00000356936 FGD5Q6ZNL6 1462 aa30.33■■■□□ 2.45
NCL-202ENST00000356936 OSCARQ8IYS5 282 aa30.32■■■□□ 2.44
NCL-202ENST00000356936 RAD54L2Q9Y4B4 1467 aa30.29■■■□□ 2.44
NCL-202ENST00000356936 AQRO60306 1485 aaKnown RBP eCLIP30.26■■■□□ 2.442e-13■■■■□ 22.4
NCL-202ENST00000356936 WDR97A6NE52 1622 aa30.21■■■□□ 2.43
NCL-202ENST00000356936 TDRD9Q8NDG6 1382 aaKnown RBP30.18■■■□□ 2.42
NCL-202ENST00000356936 WRNQ14191 1432 aaPredicted RBP eCLIP30.13■■■□□ 2.41
NCL-202ENST00000356936 TOP2BQ02880 1626 aa30.07■■■□□ 2.4
NCL-202ENST00000356936 BIVM-ERCC5R4GMW8 1640 aa30.05■■■□□ 2.4
NCL-202ENST00000356936 ABCA10Q8WWZ4 1543 aa30.05■■■□□ 2.4
NCL-202ENST00000356936 GRIN2BQ13224 1484 aa30.03■■■□□ 2.4
NCL-202ENST00000356936 SYNJ1O43426 1573 aa30.01■■■□□ 2.39
NCL-202ENST00000356936 FBLN2P98095 1184 aa30■■■□□ 2.39
NCL-202ENST00000356936 SNAPC4Q5SXM2 1469 aa29.99■■■□□ 2.39
NCL-202ENST00000356936 GAPVD1Q14C86 1478 aa29.99■■■□□ 2.39
NCL-202ENST00000356936 MAGI1Q96QZ7 1491 aaPredicted RBP29.99■■■□□ 2.39
NCL-202ENST00000356936 CHD1O14646 1710 aa29.96■■■□□ 2.39
NCL-202ENST00000356936 ABCA5Q8WWZ7 1642 aa29.92■■■□□ 2.38
NCL-202ENST00000356936 CHMP7Q8WUX9 453 aaPredicted RBP29.9■■■□□ 2.38
NCL-202ENST00000356936 PBRM1Q86U86 1689 aa29.88■■■□□ 2.37
NCL-202ENST00000356936 SYNJ2O15056 1496 aa29.87■■■□□ 2.37
NCL-202ENST00000356936 TRIM41Q8WV44 630 aa29.82■■■□□ 2.36
NCL-202ENST00000356936 RIMBP3CA6NJZ7 1639 aa29.77■■■□□ 2.36
NCL-202ENST00000356936 RIMBP3BA6NNM3 1639 aa29.77■■■□□ 2.36
NCL-202ENST00000356936 RIMBP3Q9UFD9 1639 aa29.77■■■□□ 2.36
NCL-202ENST00000356936 ARHGEF11O15085 1522 aa29.76■■■□□ 2.36
NCL-202ENST00000356936 ERICH3Q5RHP9 1530 aa29.71■■■□□ 2.35
NCL-202ENST00000356936 CLASP1Q7Z460 1538 aa29.68■■■□□ 2.34
NCL-202ENST00000356936 ADAMTS12P58397 1594 aa29.65■■■□□ 2.34
NCL-202ENST00000356936 FHAD1B1AJZ9 1412 aa29.65■■■□□ 2.34
NCL-202ENST00000356936 GRIN2AQ12879 1464 aa29.62■■■□□ 2.33
NCL-202ENST00000356936 KIF27Q86VH2 1401 aa29.55■■■□□ 2.32
NCL-202ENST00000356936 CYB5RLQ6IPT4 315 aa29.53■■■□□ 2.32
NCL-202ENST00000356936 NUP160Q12769 1436 aa29.51■■■□□ 2.31
NCL-202ENST00000356936 ARAP1Q96P48 1450 aa29.48■■■□□ 2.31
NCL-202ENST00000356936 CEP170Q5SW79 1584 aa29.45■■■□□ 2.31
NCL-202ENST00000356936 IGF1RP08069 1367 aa29.43■■■□□ 2.3
NCL-202ENST00000356936 CUL7Q14999 1698 aa29.37■■■□□ 2.29
NCL-202ENST00000356936 SHROOM2Q13796 1616 aa29.28■■■□□ 2.28
NCL-202ENST00000356936 CARMIL1Q5VZK9 1371 aa29.26■■■□□ 2.28
NCL-202ENST00000356936 JPH4Q96JJ6 628 aa29.23■■■□□ 2.27
NCL-202ENST00000356936 RUSC2Q8N2Y8 1516 aa29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms