RNA–Protein interactions for RNA: ENST00000456847.7

CPSF6-203, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 5 BASIC

Gene CPSF6, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-203ENST00000456847 NISCHQ9Y2I1 1504 aa39.81■■■■□ 3.96
CPSF6-203ENST00000456847 CCDC180Q9P1Z9 1646 aa35.59■■■■□ 3.29
CPSF6-203ENST00000456847 ABCC9O60706 1549 aa35.05■■■■□ 3.2
CPSF6-203ENST00000456847 RB1CC1Q8TDY2 1594 aa33.61■■■□□ 2.97
CPSF6-203ENST00000456847 NACADO15069 1562 aa33.48■■■□□ 2.95
CPSF6-203ENST00000456847 DCAF8L2P0C7V8 631 aa33.41■■■□□ 2.94
CPSF6-203ENST00000456847 MYO15BQ96JP2 1530 aa33.13■■■□□ 2.89
CPSF6-203ENST00000456847 ZCCHC6Q5VYS8 1495 aaKnown RBP33.12■■■□□ 2.89
CPSF6-203ENST00000456847 DCAF1Q9Y4B6 1507 aa32.9■■■□□ 2.86
CPSF6-203ENST00000456847 UNC13AQ9UPW8 1703 aa32.9■■■□□ 2.86
CPSF6-203ENST00000456847 PABPN1Q86U42 306 aaKnown RBP eCLIP32.67■■■□□ 2.82
CPSF6-203ENST00000456847 BICRAQ9NZM4 1560 aa32.56■■■□□ 2.8
CPSF6-203ENST00000456847 SCRIBQ14160 1630 aa32.47■■■□□ 2.79
CPSF6-203ENST00000456847 DNAJC5BQ9UF47 199 aa32.3■■■□□ 2.76
CPSF6-203ENST00000456847 SHROOM4Q9ULL8 1493 aa32.19■■■□□ 2.74
CPSF6-203ENST00000456847 EIF4G1Q04637 1599 aaKnown RBP31.75■■■□□ 2.67
CPSF6-203ENST00000456847 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
CPSF6-203ENST00000456847 CECR2Q9BXF3 1484 aa31.51■■■□□ 2.64
CPSF6-203ENST00000456847 SMARCA4P51532 1647 aa31■■■□□ 2.55
CPSF6-203ENST00000456847 BAZ1AQ9NRL2 1556 aaPredicted RBP30.91■■■□□ 2.54
CPSF6-203ENST00000456847 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
CPSF6-203ENST00000456847 NCAPD3P42695 1498 aa30.84■■■□□ 2.53
CPSF6-203ENST00000456847 SMARCA2P51531 1590 aa30.84■■■□□ 2.53
CPSF6-203ENST00000456847 HMGXB3Q12766 1538 aa30.72■■■□□ 2.51
CPSF6-203ENST00000456847 MROH2BQ7Z745 1585 aa30.69■■■□□ 2.5
CPSF6-203ENST00000456847 PEG3Q9GZU2 1588 aa30.64■■■□□ 2.5
CPSF6-203ENST00000456847 BAZ1BQ9UIG0 1483 aaKnown RBP30.62■■■□□ 2.49
CPSF6-203ENST00000456847 WIZO95785 1651 aa30.39■■■□□ 2.46
CPSF6-203ENST00000456847 ERCC6Q03468 1493 aa30.27■■■□□ 2.44
CPSF6-203ENST00000456847 NESP48681 1621 aa30.24■■■□□ 2.43
CPSF6-203ENST00000456847 RSF1Q96T23 1441 aaPredicted RBP30.2■■■□□ 2.43
CPSF6-203ENST00000456847 LAMC3Q9Y6N6 1575 aa30.14■■■□□ 2.42
CPSF6-203ENST00000456847 TOP2AP11388 1531 aaKnown RBP30.04■■■□□ 2.4
CPSF6-203ENST00000456847 CUX2O14529 1486 aa29.99■■■□□ 2.39
CPSF6-203ENST00000456847 KIF21AQ7Z4S6 1674 aa29.95■■■□□ 2.38
CPSF6-203ENST00000456847 CADPSQ9ULU8 1353 aa29.93■■■□□ 2.38
CPSF6-203ENST00000456847 PDS5BQ9NTI5 1447 aa29.92■■■□□ 2.38
CPSF6-203ENST00000456847 THOC2Q8NI27 1593 aaKnown RBP29.88■■■□□ 2.37
CPSF6-203ENST00000456847 CFTRP13569 1480 aa29.7■■■□□ 2.35
CPSF6-203ENST00000456847 MRC2Q9UBG0 1479 aa29.66■■■□□ 2.34
CPSF6-203ENST00000456847 CEP164Q9UPV0 1460 aa29.66■■■□□ 2.34
CPSF6-203ENST00000456847 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
CPSF6-203ENST00000456847 FANCD2Q9BXW9 1451 aa29.64■■■□□ 2.34
CPSF6-203ENST00000456847 PRDM2Q13029 1718 aa29.61■■■□□ 2.33
CPSF6-203ENST00000456847 WDR62O43379 1518 aa29.56■■■□□ 2.32
CPSF6-203ENST00000456847 URB2Q14146 1524 aaKnown RBP29.35■■■□□ 2.29
CPSF6-203ENST00000456847 DNAJC5Q9H3Z4 198 aa29.32■■■□□ 2.28
CPSF6-203ENST00000456847 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
CPSF6-203ENST00000456847 TOPBP1Q92547 1522 aa29.14■■■□□ 2.26
CPSF6-203ENST00000456847 ABCC8Q09428 1581 aa29.11■■■□□ 2.25
CPSF6-203ENST00000456847 DNMBPQ6XZF7 1577 aa29.1■■■□□ 2.25
CPSF6-203ENST00000456847 IFT140Q96RY7 1462 aa29.02■■■□□ 2.24
CPSF6-203ENST00000456847 ZNF608Q9ULD9 1512 aaPredicted RBP28.9■■■□□ 2.22
CPSF6-203ENST00000456847 POLA1P09884 1462 aaPredicted RBP28.86■■■□□ 2.21
CPSF6-203ENST00000456847 TARBP1Q13395 1621 aaKnown RBP28.84■■■□□ 2.21
CPSF6-203ENST00000456847 EIF4G3O43432 1585 aaKnown RBP28.84■■■□□ 2.21
CPSF6-203ENST00000456847 CUX1P39880 1505 aa28.82■■■□□ 2.2
CPSF6-203ENST00000456847 FGD5Q6ZNL6 1462 aa28.78■■■□□ 2.2
CPSF6-203ENST00000456847 RAD54L2Q9Y4B4 1467 aa28.75■■■□□ 2.19
CPSF6-203ENST00000456847 SOGA1O94964 1423 aa28.73■■■□□ 2.19
CPSF6-203ENST00000456847 AQRO60306 1485 aaKnown RBP eCLIP28.7■■■□□ 2.181e-6■■■■□ 22
CPSF6-203ENST00000456847 OSCARQ8IYS5 282 aa28.67■■■□□ 2.18
CPSF6-203ENST00000456847 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
CPSF6-203ENST00000456847 TDRD9Q8NDG6 1382 aaKnown RBP28.6■■■□□ 2.17
CPSF6-203ENST00000456847 CHD1O14646 1710 aa28.56■■■□□ 2.16
CPSF6-203ENST00000456847 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
CPSF6-203ENST00000456847 WRNQ14191 1432 aaPredicted RBP eCLIP28.53■■■□□ 2.16
CPSF6-203ENST00000456847 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
CPSF6-203ENST00000456847 SYNJ1O43426 1573 aa28.5■■■□□ 2.15
CPSF6-203ENST00000456847 SNAPC4Q5SXM2 1469 aa28.47■■■□□ 2.15
CPSF6-203ENST00000456847 PBRM1Q86U86 1689 aa28.47■■■□□ 2.15
CPSF6-203ENST00000456847 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.15
CPSF6-203ENST00000456847 FBLN2P98095 1184 aa28.45■■■□□ 2.14
CPSF6-203ENST00000456847 GRIN2BQ13224 1484 aa28.44■■■□□ 2.14
CPSF6-203ENST00000456847 GAPVD1Q14C86 1478 aa28.41■■■□□ 2.14
CPSF6-203ENST00000456847 ABCA5Q8WWZ7 1642 aa28.41■■■□□ 2.14
CPSF6-203ENST00000456847 MAGI1Q96QZ7 1491 aaPredicted RBP28.4■■■□□ 2.14
CPSF6-203ENST00000456847 TRIM41Q8WV44 630 aa28.35■■■□□ 2.13
CPSF6-203ENST00000456847 RIMBP3CA6NJZ7 1639 aa28.32■■■□□ 2.12
CPSF6-203ENST00000456847 RIMBP3BA6NNM3 1639 aa28.32■■■□□ 2.12
CPSF6-203ENST00000456847 RIMBP3Q9UFD9 1639 aa28.32■■■□□ 2.12
CPSF6-203ENST00000456847 CHMP7Q8WUX9 453 aaPredicted RBP28.3■■■□□ 2.12
CPSF6-203ENST00000456847 SYNJ2O15056 1496 aa28.29■■■□□ 2.12
CPSF6-203ENST00000456847 ARHGEF11O15085 1522 aa28.26■■■□□ 2.11
CPSF6-203ENST00000456847 ADAMTS12P58397 1594 aa28.18■■■□□ 2.1
CPSF6-203ENST00000456847 CLASP1Q7Z460 1538 aa28.17■■■□□ 2.1
CPSF6-203ENST00000456847 ERICH3Q5RHP9 1530 aa28.13■■■□□ 2.09
CPSF6-203ENST00000456847 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
CPSF6-203ENST00000456847 FHAD1B1AJZ9 1412 aa28.06■■■□□ 2.08
CPSF6-203ENST00000456847 ARAP1Q96P48 1450 aa28■■■□□ 2.07
CPSF6-203ENST00000456847 CYB5RLQ6IPT4 315 aa27.98■■■□□ 2.07
CPSF6-203ENST00000456847 CEP170Q5SW79 1584 aa27.97■■■□□ 2.07
CPSF6-203ENST00000456847 KIF27Q86VH2 1401 aa27.95■■■□□ 2.07
CPSF6-203ENST00000456847 NUP160Q12769 1436 aa27.94■■■□□ 2.06
CPSF6-203ENST00000456847 CUL7Q14999 1698 aa27.88■■■□□ 2.05
CPSF6-203ENST00000456847 IGF1RP08069 1367 aa27.81■■■□□ 2.04
CPSF6-203ENST00000456847 SHROOM2Q13796 1616 aa27.8■■■□□ 2.04
CPSF6-203ENST00000456847 RUSC2Q8N2Y8 1516 aa27.77■■■□□ 2.04
CPSF6-203ENST00000456847 ERCC6L2Q5T890 1561 aa27.76■■■□□ 2.03
CPSF6-203ENST00000456847 CARMIL1Q5VZK9 1371 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms