RNA–Protein interactions for RNA: ENST00000551516.1

CPSF6-207, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2 BASIC

Gene CPSF6, Length 234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-207ENST00000551516 CHIC1Q5VXU3 224 aa9.23□□□□□ -0.93
CPSF6-207ENST00000551516 AEBP2Q6ZN18 517 aaPredicted RBP9.19□□□□□ -0.94
CPSF6-207ENST00000551516 PHF23Q9BUL5 403 aaPredicted RBP8.11□□□□□ -1.11
CPSF6-207ENST00000551516 SENP3Q9H4L4 574 aaPredicted RBP7.82□□□□□ -1.16
CPSF6-207ENST00000551516 PLPPR3Q6T4P5 718 aa7.62□□□□□ -1.19
CPSF6-207ENST00000551516 FOXD1Q16676 465 aa7.2□□□□□ -1.26
CPSF6-207ENST00000551516 ADRA2BP18089 450 aa7.1□□□□□ -1.27
CPSF6-207ENST00000551516 PPP6R1Q9UPN7 881 aa7.09□□□□□ -1.27
CPSF6-207ENST00000551516 PIAS4Q8N2W9 510 aaPredicted RBP6.87□□□□□ -1.31
CPSF6-207ENST00000551516 KCNA4P22459 653 aa6.79□□□□□ -1.32
CPSF6-207ENST00000551516 PPP4R3CPQ6ZMV5 832 aa6.73□□□□□ -1.33
CPSF6-207ENST00000551516 NCBP3Q53F19 620 aaKnown RBP6.65□□□□□ -1.34
CPSF6-207ENST00000551516 MSH5O43196 834 aa6.6□□□□□ -1.35
CPSF6-207ENST00000551516 EHMT2Q96KQ7 1210 aa6.58□□□□□ -1.36
CPSF6-207ENST00000551516 SCAF1Q9H7N4 1312 aaKnown RBP6.57□□□□□ -1.36
CPSF6-207ENST00000551516 POTEDQ86YR6 584 aa6.54□□□□□ -1.36
CPSF6-207ENST00000551516 SLC4A1APQ9BWU0 796 aaKnown RBP6.53□□□□□ -1.36
CPSF6-207ENST00000551516 NPM3O75607 178 aaKnown RBP6.5□□□□□ -1.37
CPSF6-207ENST00000551516 CNKSR2Q8WXI2 1034 aa6.5□□□□□ -1.37
CPSF6-207ENST00000551516 CSRNP3Q8WYN3 585 aa6.39□□□□□ -1.39
CPSF6-207ENST00000551516 MAPK8IP2Q13387 824 aaPredicted RBP6.38□□□□□ -1.39
CPSF6-207ENST00000551516 RNF216Q9NWF9 866 aaPredicted RBP6.31□□□□□ -1.4
CPSF6-207ENST00000551516 DNAJC5BQ9UF47 199 aa6.27□□□□□ -1.41
CPSF6-207ENST00000551516 DMRT2Q9Y5R5 561 aa6.26□□□□□ -1.41
CPSF6-207ENST00000551516 ZBTB22O15209 634 aa6.22□□□□□ -1.41
CPSF6-207ENST00000551516 HOXD11P31277 338 aaPredicted RBP6.22□□□□□ -1.41
CPSF6-207ENST00000551516 FOXD4L1Q9NU39 408 aa6.22□□□□□ -1.41
CPSF6-207ENST00000551516 NISCHQ9Y2I1 1504 aa6.15□□□□□ -1.43
CPSF6-207ENST00000551516 SLC4A2P04920 1241 aa6.07□□□□□ -1.44
CPSF6-207ENST00000551516 DCAF8L1A6NGE4 600 aa6.02□□□□□ -1.45
CPSF6-207ENST00000551516 MYCNP04198 464 aaPredicted RBP6.02□□□□□ -1.45
CPSF6-207ENST00000551516 ATXN8OSP0DMR3 200 aa5.99□□□□□ -1.45
CPSF6-207ENST00000551516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.97□□□□□ -1.455e-7■□□□□ 11.3
CPSF6-207ENST00000551516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.9□□□□□ -1.46
CPSF6-207ENST00000551516 HNRNPUL2Q1KMD3 747 aaKnown RBP5.9□□□□□ -1.46
CPSF6-207ENST00000551516 SAMD1Q6SPF0 538 aaPredicted RBP5.88□□□□□ -1.47
CPSF6-207ENST00000551516 U3KPZ7 1027 aaPredicted RBP5.84□□□□□ -1.47
CPSF6-207ENST00000551516 APLP2Q06481 763 aa5.81□□□□□ -1.48
CPSF6-207ENST00000551516 ATF5Q9Y2D1 282 aaPredicted RBP5.8□□□□□ -1.48
CPSF6-207ENST00000551516 FKBP8Q14318 412 aa5.79□□□□□ -1.48
CPSF6-207ENST00000551516 ZNF219Q9P2Y4 722 aaPredicted RBP5.72□□□□□ -1.49
CPSF6-207ENST00000551516 AMER1Q5JTC6 1135 aaPredicted RBP5.67□□□□□ -1.5
CPSF6-207ENST00000551516 TRHP20396 242 aaPredicted RBP5.65□□□□□ -1.5
CPSF6-207ENST00000551516 RNF39Q9H2S5 420 aa5.64□□□□□ -1.51
CPSF6-207ENST00000551516 CAPN15O75808 1086 aa5.63□□□□□ -1.51
CPSF6-207ENST00000551516 FBLN2P98095 1184 aa5.62□□□□□ -1.51
CPSF6-207ENST00000551516 C1QBPQ07021 282 aaKnown RBP5.62□□□□□ -1.51
CPSF6-207ENST00000551516 SPINK5Q9NQ38 1064 aaPredicted RBP5.61□□□□□ -1.51
CPSF6-207ENST00000551516 RTN4Q9NQC3 1192 aaKnown RBP5.61□□□□□ -1.51
CPSF6-207ENST00000551516 POLA2Q14181 598 aa5.6□□□□□ -1.51
CPSF6-207ENST00000551516 SPDYE4A6NLX3 237 aa5.58□□□□□ -1.52
CPSF6-207ENST00000551516 ABCC9O60706 1549 aa5.58□□□□□ -1.52
CPSF6-207ENST00000551516 FBXO3Q9UK99 471 aa5.57□□□□□ -1.52
CPSF6-207ENST00000551516 MKRN4PQ13434 485 aaPredicted RBP5.56□□□□□ -1.52
CPSF6-207ENST00000551516 ZBTB12Q9Y330 459 aaPredicted RBP5.54□□□□□ -1.52
CPSF6-207ENST00000551516 ABCB7O75027 752 aa5.52□□□□□ -1.53
CPSF6-207ENST00000551516 PROM2Q8N271 834 aa5.48□□□□□ -1.53
CPSF6-207ENST00000551516 SLC24A1O60721 1099 aa5.45□□□□□ -1.54
CPSF6-207ENST00000551516 DSG3P32926 999 aa5.45□□□□□ -1.54
CPSF6-207ENST00000551516 CCDC180Q9P1Z9 1646 aa5.44□□□□□ -1.54
CPSF6-207ENST00000551516 VASPP50552 380 aaPredicted RBP5.43□□□□□ -1.54
CPSF6-207ENST00000551516 CACNB1Q02641 598 aaPredicted RBP5.42□□□□□ -1.54
CPSF6-207ENST00000551516 ZNF692Q9BU19 519 aaPredicted RBP5.42□□□□□ -1.54
CPSF6-207ENST00000551516 SPDYE2BA6NHP3 402 aa5.39□□□□□ -1.55
CPSF6-207ENST00000551516 SPDYE6P0CI01 402 aa5.39□□□□□ -1.55
CPSF6-207ENST00000551516 SPDYE2Q495Y8 402 aa5.39□□□□□ -1.55
CPSF6-207ENST00000551516 IFNLR1Q8IU57 520 aaPredicted RBP5.37□□□□□ -1.55
CPSF6-207ENST00000551516 OSCARQ8IYS5 282 aa5.37□□□□□ -1.55
CPSF6-207ENST00000551516 STAG3Q9UJ98 1225 aa5.37□□□□□ -1.55
CPSF6-207ENST00000551516 SSUH2Q9Y2M2 353 aa5.35□□□□□ -1.55
CPSF6-207ENST00000551516 PABPN1Q86U42 306 aaKnown RBP eCLIP5.34□□□□□ -1.55
CPSF6-207ENST00000551516 KLHL34Q8N239 644 aa5.34□□□□□ -1.55
CPSF6-207ENST00000551516 PLCD3Q8N3E9 789 aa5.32□□□□□ -1.56
CPSF6-207ENST00000551516 PLEKHG5O94827 1062 aa5.3□□□□□ -1.56
CPSF6-207ENST00000551516 DCAF8L2P0C7V8 631 aa5.3□□□□□ -1.56
CPSF6-207ENST00000551516 MIER1Q8N108 512 aa5.3□□□□□ -1.56
CPSF6-207ENST00000551516 SPOCK2Q92563 424 aa5.3□□□□□ -1.56
CPSF6-207ENST00000551516 PKD2Q13563 968 aa5.26□□□□□ -1.57
CPSF6-207ENST00000551516 ZBTB47Q9UFB7 747 aaPredicted RBP5.26□□□□□ -1.57
CPSF6-207ENST00000551516 ECM2O94769 699 aaPredicted RBP5.24□□□□□ -1.57
CPSF6-207ENST00000551516 BICRAQ9NZM4 1560 aa5.24□□□□□ -1.57
CPSF6-207ENST00000551516 MYO15BQ96JP2 1530 aa5.23□□□□□ -1.57
CPSF6-207ENST00000551516 RBM42Q9BTD8 480 aaKnown RBP5.23□□□□□ -1.57
CPSF6-207ENST00000551516 NACADO15069 1562 aa5.22□□□□□ -1.57
CPSF6-207ENST00000551516 PLCB2Q00722 1185 aa5.22□□□□□ -1.57
CPSF6-207ENST00000551516 RB1CC1Q8TDY2 1594 aa5.21□□□□□ -1.57
CPSF6-207ENST00000551516 AKT1S1Q96B36 256 aa5.2□□□□□ -1.58
CPSF6-207ENST00000551516 CIZ1Q9ULV3 898 aaPredicted RBP5.2□□□□□ -1.58
CPSF6-207ENST00000551516 SPDYE1Q8NFV5 336 aaPredicted RBP5.19□□□□□ -1.58
CPSF6-207ENST00000551516 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.18□□□□□ -1.58
CPSF6-207ENST00000551516 HAP1P54257 671 aaPredicted RBP5.17□□□□□ -1.58
CPSF6-207ENST00000551516 CLEC11AQ9Y240 323 aa5.17□□□□□ -1.58
CPSF6-207ENST00000551516 TRIM41Q8WV44 630 aa5.16□□□□□ -1.58
CPSF6-207ENST00000551516 PRR29P0C7W0 189 aa5.15□□□□□ -1.59
CPSF6-207ENST00000551516 GSE1Q14687 1217 aa5.15□□□□□ -1.59
CPSF6-207ENST00000551516 BBXQ8WY36 941 aaPredicted RBP5.15□□□□□ -1.59
CPSF6-207ENST00000551516 RGL2O15211 777 aa5.14□□□□□ -1.59
CPSF6-207ENST00000551516 DCAF8Q5TAQ9 597 aa5.12□□□□□ -1.59
CPSF6-207ENST00000551516 REM2Q8IYK8 340 aaPredicted RBP5.12□□□□□ -1.59
CPSF6-207ENST00000551516 PAXIP1Q6ZW49 1069 aaPredicted RBP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms