Protein–RNA interactions for Protein: Q9NRR4

DROSHA, Ribonuclease 3, humanhuman

Known RBP eCLIP

Length 1,374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DROSHAQ9NRR4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.416e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-214ENST00000580461 909 ntTSL 219.55■□□□□ 0.726e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-226ENST00000582848 591 ntTSL 318.45■□□□□ 0.546e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-236ENST00000584901 1021 ntTSL 218.45■□□□□ 0.546e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-213ENST00000579139 568 ntTSL 418.2■□□□□ 0.56e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-218ENST00000581544 1444 ntTSL 217.41■□□□□ 0.386e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC17.4■□□□□ 0.386e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-223ENST00000582169 552 ntTSL 416.59■□□□□ 0.256e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-229ENST00000583802 563 ntTSL 416.59■□□□□ 0.256e-7■■□□□ 14.4
DROSHAQ9NRR4 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.186e-7■■□□□ 14.4
DROSHAQ9NRR4 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC15.88■□□□□ 0.136e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-209ENST00000578495 916 ntTSL 515.61■□□□□ 0.096e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-215ENST00000580886 562 ntTSL 215.47■□□□□ 0.076e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-231ENST00000584054 716 ntTSL 215.47■□□□□ 0.076e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-232ENST00000584712 782 ntTSL 214.75□□□□□ -0.056e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-233ENST00000584784 818 ntTSL 514.73□□□□□ -0.056e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-212ENST00000579085 569 ntTSL 414.21□□□□□ -0.146e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-237ENST00000585024 577 ntTSL 413.66□□□□□ -0.226e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-202ENST00000396527 1169 ntTSL 211.5□□□□□ -0.576e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-230ENST00000583899 665 ntTSL 39.72□□□□□ -0.856e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-211ENST00000578754 547 ntTSL 48.43□□□□□ -1.066e-7■■□□□ 14.4
DROSHAQ9NRR4 EIF4A1-224ENST00000582213 560 ntTSL 46.21□□□□□ -1.416e-7■■□□□ 14.4
DROSHAQ9NRR4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.233e-7■■□□□ 14.4
DROSHAQ9NRR4 HIST1H4H-202ENST00000634560 1034 ntTSL 1 (best)15.59■□□□□ 0.094e-13■■□□□ 14.4
DROSHAQ9NRR4 HIST1H4H-204ENST00000635491 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.094e-13■■□□□ 14.4
DROSHAQ9NRR4 HIST1H4H-201ENST00000377727 397 ntAPPRIS P1 BASIC14.79□□□□□ -0.044e-13■■□□□ 14.4
DROSHAQ9NRR4 HIST1H4H-203ENST00000634956 2163 ntTSL 511.94□□□□□ -0.54e-13■■□□□ 14.4
DROSHAQ9NRR4 AGXT-204ENST00000476698 507 ntTSL 523.26■■□□□ 1.313e-6■■□□□ 14.4
DROSHAQ9NRR4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.121e-8■■□□□ 14.3
DROSHAQ9NRR4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC25.49■■□□□ 1.671e-8■■□□□ 14.3
DROSHAQ9NRR4 NEK7-205ENST00000442588 519 ntTSL 525.09■■□□□ 1.611e-8■■□□□ 14.3
DROSHAQ9NRR4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.891e-8■■□□□ 14.3
DROSHAQ9NRR4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.211e-6■■□□□ 14.3
DROSHAQ9NRR4 SSU72-203ENST00000378725 619 ntTSL 228.75■■■□□ 2.191e-6■■□□□ 14.3
DROSHAQ9NRR4 SSU72-202ENST00000359060 4176 ntTSL 2 BASIC15.31■□□□□ 0.041e-6■■□□□ 14.3
DROSHAQ9NRR4 ETFA-201ENST00000267950 1289 ntTSL 532.81■■■□□ 2.849e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-206ENST00000559075 1735 ntTSL 232.62■■■□□ 2.819e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-213ENST00000560309 633 ntTSL 331.92■■■□□ 2.79e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-207ENST00000559386 893 ntTSL 531.38■■■□□ 2.619e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-215ENST00000560595 917 ntTSL 1 (best)31.38■■■□□ 2.619e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC30.28■■■□□ 2.449e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-219ENST00000561092 461 ntTSL 329.2■■■□□ 2.269e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC28.54■■■□□ 2.169e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-211ENST00000560044 1054 ntTSL 528.38■■■□□ 2.139e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-218ENST00000560899 910 ntTSL 526.62■■□□□ 1.859e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC26.62■■□□□ 1.859e-9■■□□□ 14.3
DROSHAQ9NRR4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.559e-9■■□□□ 14.3
DROSHAQ9NRR4 PTP4A2-212ENST00000529477 568 ntTSL 329.13■■■□□ 2.258e-10■■□□□ 14.3
DROSHAQ9NRR4 PTP4A2-209ENST00000526960 793 ntTSL 522.97■■□□□ 1.278e-10■■□□□ 14.3
DROSHAQ9NRR4 PTP4A2-202ENST00000468531 830 ntTSL 39.28□□□□□ -0.928e-10■■□□□ 14.3
DROSHAQ9NRR4 NEAT1-202ENST00000501122 22743 ntBASIC4.83□□□□□ -1.643e-43■■□□□ 14.3
DROSHAQ9NRR4 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.581e-6■■□□□ 14.3
DROSHAQ9NRR4 KLF16-202ENST00000541015 1134 ntTSL 1 (best)34.65■■■■□ 3.141e-6■■□□□ 14.3
DROSHAQ9NRR4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.771e-6■■□□□ 14.3
DROSHAQ9NRR4 VMP1-213ENST00000591877 791 ntTSL 311.54□□□□□ -0.563e-14■■□□□ 14.3
DROSHAQ9NRR4 VMP1-215ENST00000592619 838 ntTSL 56.95□□□□□ -1.33e-14■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-211ENST00000476772 1683 ntTSL 1 (best)43.67■■■■■ 4.582e-19■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC41.01■■■■■ 4.163e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC40.28■■■■■ 4.043e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC39.81■■■■□ 3.963e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC39.19■■■■□ 3.863e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-220ENST00000519767 970 ntTSL 1 (best)39.19■■■■□ 3.863e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC38.72■■■■□ 3.793e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC37.46■■■■□ 3.593e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC30.27■■■□□ 2.443e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC27.94■■■□□ 2.063e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC27.81■■■□□ 2.043e-7■■□□□ 14.3
DROSHAQ9NRR4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.432e-7■■□□□ 14.3
DROSHAQ9NRR4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.812e-6■■□□□ 14.3
DROSHAQ9NRR4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.252e-6■■□□□ 14.3
DROSHAQ9NRR4 AFDN-209ENST00000400825 963 ntTSL 544.69■■■■■ 4.741e-6■■□□□ 14.3
DROSHAQ9NRR4 AFDN-208ENST00000400824 875 ntTSL 541.91■■■■■ 4.31e-6■■□□□ 14.3
DROSHAQ9NRR4 YES1-204ENST00000581960 487 ntTSL 338.81■■■■□ 3.84e-8■■□□□ 14.3
DROSHAQ9NRR4 YES1-202ENST00000577611 568 ntTSL 431.07■■■□□ 2.564e-8■■□□□ 14.3
DROSHAQ9NRR4 POLRMT-201ENST00000587057 1229 ntTSL 529.27■■■□□ 2.284e-8■■□□□ 14.3
DROSHAQ9NRR4 POLRMT-203ENST00000589961 490 ntTSL 328.47■■■□□ 2.154e-8■■□□□ 14.3
DROSHAQ9NRR4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.124e-8■■□□□ 14.3
DROSHAQ9NRR4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.864e-8■■□□□ 14.3
DROSHAQ9NRR4 NELFA-211ENST00000458616 792 ntTSL 326.34■■□□□ 1.814e-8■■□□□ 14.3
DROSHAQ9NRR4 EDC4-202ENST00000536072 2375 ntTSL 224.42■■□□□ 1.54e-8■■□□□ 14.3
DROSHAQ9NRR4 POLRMT-207ENST00000592633 469 ntTSL 223.46■■□□□ 1.354e-8■■□□□ 14.3
DROSHAQ9NRR4 PARK7-210ENST00000497113 670 ntTSL 322.53■■□□□ 1.24e-8■■□□□ 14.3
DROSHAQ9NRR4 AP2M1-216ENST00000472560 910 ntTSL 222.44■■□□□ 1.184e-8■■□□□ 14.3
DROSHAQ9NRR4 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.864e-8■■□□□ 14.3
DROSHAQ9NRR4 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.774e-8■■□□□ 14.3
DROSHAQ9NRR4 PARK7-202ENST00000377488 783 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.434e-8■■□□□ 14.3
DROSHAQ9NRR4 AP2M1-206ENST00000432591 802 ntTSL 517.44■□□□□ 0.384e-8■■□□□ 14.3
DROSHAQ9NRR4 EDC4-207ENST00000573992 3934 ntTSL 1 (best)14.57□□□□□ -0.084e-8■■□□□ 14.3
DROSHAQ9NRR4 POLRMT-204ENST00000590336 380 ntTSL 312.84□□□□□ -0.354e-8■■□□□ 14.3
DROSHAQ9NRR4 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.534e-8■■□□□ 14.3
DROSHAQ9NRR4 YES1-205ENST00000584307 4639 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.824e-8■■□□□ 14.3
DROSHAQ9NRR4 R3HDM4-202ENST00000586080 537 ntTSL 433.1■■■□□ 2.891e-6■■□□□ 14.3
DROSHAQ9NRR4 R3HDM4-207ENST00000591829 823 ntTSL 521.17■□□□□ 0.981e-6■■□□□ 14.3
Retrieved 100 of 16,331 protein–RNA pairs in 80.5 ms