RNA–Protein interactions for RNA: ENST00000611736.5

VEGFA-226, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,239 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-226ENST00000611736 NISCHQ9Y2I1 1504 aa63.27■■■■■ 7.72
VEGFA-226ENST00000611736 CCDC180Q9P1Z9 1646 aa56.26■■■■■ 6.6
VEGFA-226ENST00000611736 ABCC9O60706 1549 aa55.21■■■■■ 6.43
VEGFA-226ENST00000611736 DCAF8L2P0C7V8 631 aa53.01■■■■■ 6.08
VEGFA-226ENST00000611736 RB1CC1Q8TDY2 1594 aa53.01■■■■■ 6.08
VEGFA-226ENST00000611736 NACADO15069 1562 aa52.91■■■■■ 6.06
VEGFA-226ENST00000611736 ZCCHC6Q5VYS8 1495 aaKnown RBP52.69■■■■■ 6.03
VEGFA-226ENST00000611736 MYO15BQ96JP2 1530 aa52.51■■■■■ 6
VEGFA-226ENST00000611736 DCAF1Q9Y4B6 1507 aa52.29■■■■■ 5.96
VEGFA-226ENST00000611736 UNC13AQ9UPW8 1703 aa51.85■■■■■ 5.89
VEGFA-226ENST00000611736 PABPN1Q86U42 306 aaKnown RBP eCLIP51.6■■■■■ 5.85
VEGFA-226ENST00000611736 SCRIBQ14160 1630 aa51.42■■■■■ 5.82
VEGFA-226ENST00000611736 BICRAQ9NZM4 1560 aa51.42■■■■■ 5.82
VEGFA-226ENST00000611736 DNAJC5BQ9UF47 199 aa50.93■■■■■ 5.74
VEGFA-226ENST00000611736 SHROOM4Q9ULL8 1493 aa50.78■■■■■ 5.72
VEGFA-226ENST00000611736 EIF4G1Q04637 1599 aaKnown RBP50.08■■■■■ 5.61
VEGFA-226ENST00000611736 CC2D2AQ9P2K1 1620 aa49.9■■■■■ 5.58
VEGFA-226ENST00000611736 CECR2Q9BXF3 1484 aa49.58■■■■■ 5.53
VEGFA-226ENST00000611736 SMARCA4P51532 1647 aa49.13■■■■■ 5.46
VEGFA-226ENST00000611736 BAZ1AQ9NRL2 1556 aaPredicted RBP49.04■■■■■ 5.44
VEGFA-226ENST00000611736 ATAD2BQ9ULI0 1458 aa48.87■■■■■ 5.41
VEGFA-226ENST00000611736 NCAPD3P42695 1498 aa48.81■■■■■ 5.4
VEGFA-226ENST00000611736 SMARCA2P51531 1590 aa48.8■■■■■ 5.4
VEGFA-226ENST00000611736 MROH2BQ7Z745 1585 aa48.79■■■■■ 5.4
VEGFA-226ENST00000611736 PEG3Q9GZU2 1588 aa48.6■■■■■ 5.37
VEGFA-226ENST00000611736 HMGXB3Q12766 1538 aa48.58■■■■■ 5.37
VEGFA-226ENST00000611736 BAZ1BQ9UIG0 1483 aaKnown RBP48.48■■■■■ 5.35
VEGFA-226ENST00000611736 WIZO95785 1651 aa48.28■■■■■ 5.32
VEGFA-226ENST00000611736 RSF1Q96T23 1441 aaPredicted RBP48.19■■■■■ 5.31
VEGFA-226ENST00000611736 NESP48681 1621 aa47.75■■■■■ 5.23
VEGFA-226ENST00000611736 TOP2AP11388 1531 aaKnown RBP47.73■■■■■ 5.23
VEGFA-226ENST00000611736 ERCC6Q03468 1493 aa47.59■■■■■ 5.21
VEGFA-226ENST00000611736 LAMC3Q9Y6N6 1575 aa47.55■■■■■ 5.2
VEGFA-226ENST00000611736 CADPSQ9ULU8 1353 aa47.42■■■■■ 5.18
VEGFA-226ENST00000611736 PDS5BQ9NTI5 1447 aa47.25■■■■■ 5.15
VEGFA-226ENST00000611736 CCDC88BA6NC98 1476 aa47.19■■■■■ 5.14
VEGFA-226ENST00000611736 KIF21AQ7Z4S6 1674 aa47.18■■■■■ 5.14
VEGFA-226ENST00000611736 CUX2O14529 1486 aa47.16■■■■■ 5.14
VEGFA-226ENST00000611736 CFTRP13569 1480 aa47.11■■■■■ 5.13
VEGFA-226ENST00000611736 SUPT5HO00267 1087 aaKnown RBP47.02■■■■■ 5.12
VEGFA-226ENST00000611736 THOC2Q8NI27 1593 aaKnown RBP47.01■■■■■ 5.12
VEGFA-226ENST00000611736 FANCD2Q9BXW9 1451 aa46.9■■■■■ 5.1
VEGFA-226ENST00000611736 CEP164Q9UPV0 1460 aa46.85■■■■■ 5.09
VEGFA-226ENST00000611736 MRC2Q9UBG0 1479 aa46.79■■■■■ 5.08
VEGFA-226ENST00000611736 PRDM2Q13029 1718 aa46.77■■■■■ 5.08
VEGFA-226ENST00000611736 WDR62O43379 1518 aa46.62■■■■■ 5.05
VEGFA-226ENST00000611736 URB2Q14146 1524 aaKnown RBP46.44■■■■■ 5.03
VEGFA-226ENST00000611736 DNAJC5Q9H3Z4 198 aa46.41■■■■■ 5.02
VEGFA-226ENST00000611736 TOPBP1Q92547 1522 aa46.14■■■■■ 4.98
VEGFA-226ENST00000611736 ABCC8Q09428 1581 aa46.08■■■■■ 4.97
VEGFA-226ENST00000611736 DNMBPQ6XZF7 1577 aa46.08■■■■■ 4.97
VEGFA-226ENST00000611736 IFT140Q96RY7 1462 aa45.85■■■■■ 4.93
VEGFA-226ENST00000611736 CUX1P39880 1505 aa45.78■■■■■ 4.92
VEGFA-226ENST00000611736 POLA1P09884 1462 aaPredicted RBP45.74■■■■■ 4.91
VEGFA-226ENST00000611736 ZNF608Q9ULD9 1512 aaPredicted RBP45.69■■■■■ 4.9
VEGFA-226ENST00000611736 FGD5Q6ZNL6 1462 aa45.64■■■■■ 4.9
VEGFA-226ENST00000611736 TARBP1Q13395 1621 aaKnown RBP45.63■■■■■ 4.89
VEGFA-226ENST00000611736 RAD54L2Q9Y4B4 1467 aa45.59■■■■■ 4.89
VEGFA-226ENST00000611736 SOGA1O94964 1423 aa45.56■■■■■ 4.88
VEGFA-226ENST00000611736 EIF4G3O43432 1585 aaKnown RBP45.5■■■■■ 4.87
VEGFA-226ENST00000611736 WRNQ14191 1432 aaPredicted RBP eCLIP45.45■■■■■ 4.871e-6■■■■□ 26.4
VEGFA-226ENST00000611736 AQRO60306 1485 aaKnown RBP eCLIP45.43■■■■■ 4.861e-8■■■■■ 26.8
VEGFA-226ENST00000611736 SYNJ1O43426 1573 aa45.37■■■■■ 4.85
VEGFA-226ENST00000611736 TDRD9Q8NDG6 1382 aaKnown RBP45.34■■■■■ 4.85
VEGFA-226ENST00000611736 TOP2BQ02880 1626 aa45.34■■■■■ 4.85
VEGFA-226ENST00000611736 BIVM-ERCC5R4GMW8 1640 aa45.34■■■■■ 4.85
VEGFA-226ENST00000611736 WDR97A6NE52 1622 aa45.24■■■■■ 4.83
VEGFA-226ENST00000611736 ABCA10Q8WWZ4 1543 aa45.16■■■■■ 4.82
VEGFA-226ENST00000611736 OSCARQ8IYS5 282 aa45.11■■■■■ 4.81
VEGFA-226ENST00000611736 GAPVD1Q14C86 1478 aa45.04■■■■■ 4.8
VEGFA-226ENST00000611736 GRIN2BQ13224 1484 aa45.03■■■■■ 4.8
VEGFA-226ENST00000611736 SNAPC4Q5SXM2 1469 aa45.01■■■■■ 4.8
VEGFA-226ENST00000611736 ABCA5Q8WWZ7 1642 aa45■■■■■ 4.79
VEGFA-226ENST00000611736 PBRM1Q86U86 1689 aa44.96■■■■■ 4.79
VEGFA-226ENST00000611736 CHD1O14646 1710 aa44.96■■■■■ 4.79
VEGFA-226ENST00000611736 FBLN2P98095 1184 aa44.94■■■■■ 4.78
VEGFA-226ENST00000611736 MAGI1Q96QZ7 1491 aaPredicted RBP44.91■■■■■ 4.78
VEGFA-226ENST00000611736 CHMP7Q8WUX9 453 aaPredicted RBP44.76■■■■■ 4.76
VEGFA-226ENST00000611736 SYNJ2O15056 1496 aa44.73■■■■■ 4.75
VEGFA-226ENST00000611736 TRIM41Q8WV44 630 aa44.64■■■■■ 4.74
VEGFA-226ENST00000611736 ERICH3Q5RHP9 1530 aa44.61■■■■■ 4.73
VEGFA-226ENST00000611736 ADAMTS12P58397 1594 aa44.6■■■■■ 4.73
VEGFA-226ENST00000611736 KIF27Q86VH2 1401 aa44.5■■■■■ 4.71
VEGFA-226ENST00000611736 FHAD1B1AJZ9 1412 aa44.5■■■■■ 4.71
VEGFA-226ENST00000611736 GRIN2AQ12879 1464 aa44.46■■■■■ 4.71
VEGFA-226ENST00000611736 CLASP1Q7Z460 1538 aa44.43■■■■■ 4.7
VEGFA-226ENST00000611736 RIMBP3CA6NJZ7 1639 aa44.42■■■■■ 4.7
VEGFA-226ENST00000611736 RIMBP3BA6NNM3 1639 aa44.42■■■■■ 4.7
VEGFA-226ENST00000611736 RIMBP3Q9UFD9 1639 aa44.42■■■■■ 4.7
VEGFA-226ENST00000611736 ARHGEF11O15085 1522 aa44.39■■■■■ 4.7
VEGFA-226ENST00000611736 IGF1RP08069 1367 aa44.32■■■■■ 4.69
VEGFA-226ENST00000611736 CEP170Q5SW79 1584 aa44.25■■■■■ 4.67
VEGFA-226ENST00000611736 NUP160Q12769 1436 aa44.24■■■■■ 4.67
VEGFA-226ENST00000611736 CUL7Q14999 1698 aa44.21■■■■■ 4.67
VEGFA-226ENST00000611736 RUSC2Q8N2Y8 1516 aa44.13■■■■■ 4.65
VEGFA-226ENST00000611736 CARMIL1Q5VZK9 1371 aa44.08■■■■■ 4.65
VEGFA-226ENST00000611736 ARAP1Q96P48 1450 aa44.04■■■■■ 4.64
VEGFA-226ENST00000611736 CYB5RLQ6IPT4 315 aa44.02■■■■■ 4.64
VEGFA-226ENST00000611736 SHROOM2Q13796 1616 aa43.91■■■■■ 4.62
VEGFA-226ENST00000611736 ERCC6L2Q5T890 1561 aa43.87■■■■■ 4.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms