RNA–Protein interactions for RNA: ENST00000592619.5

VMP1-215, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 838 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-215ENST00000592619 AEBP2Q6ZN18 517 aaPredicted RBP27.35■■□□□ 1.97
VMP1-215ENST00000592619 CHIC1Q5VXU3 224 aa25.98■■□□□ 1.75
VMP1-215ENST00000592619 SENP3Q9H4L4 574 aaPredicted RBP23.37■■□□□ 1.33
VMP1-215ENST00000592619 PHF23Q9BUL5 403 aaPredicted RBP23.01■■□□□ 1.27
VMP1-215ENST00000592619 FOXD1Q16676 465 aa21.92■■□□□ 1.1
VMP1-215ENST00000592619 PLPPR3Q6T4P5 718 aa21.41■■□□□ 1.02
VMP1-215ENST00000592619 POTEDQ86YR6 584 aa21.41■■□□□ 1.02
VMP1-215ENST00000592619 MSH5O43196 834 aa20.71■□□□□ 0.91
VMP1-215ENST00000592619 PIAS4Q8N2W9 510 aaPredicted RBP20.29■□□□□ 0.84
VMP1-215ENST00000592619 PPP6R1Q9UPN7 881 aa20■□□□□ 0.79
VMP1-215ENST00000592619 ADRA2BP18089 450 aa19.99■□□□□ 0.79
VMP1-215ENST00000592619 KCNA4P22459 653 aa19.27■□□□□ 0.68
VMP1-215ENST00000592619 PPP4R3CPQ6ZMV5 832 aa18.94■□□□□ 0.62
VMP1-215ENST00000592619 EHMT2Q96KQ7 1210 aa18.71■□□□□ 0.59
VMP1-215ENST00000592619 NCBP3Q53F19 620 aaKnown RBP18.67■□□□□ 0.58
VMP1-215ENST00000592619 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
VMP1-215ENST00000592619 MAPK8IP2Q13387 824 aaPredicted RBP18.48■□□□□ 0.55
VMP1-215ENST00000592619 DMRT2Q9Y5R5 561 aa18.45■□□□□ 0.54
VMP1-215ENST00000592619 NPM3O75607 178 aaKnown RBP18.37■□□□□ 0.53
VMP1-215ENST00000592619 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.53
VMP1-215ENST00000592619 CNKSR2Q8WXI2 1034 aa18.28■□□□□ 0.52
VMP1-215ENST00000592619 CSRNP3Q8WYN3 585 aa18.25■□□□□ 0.51
VMP1-215ENST00000592619 CACNB1Q02641 598 aaPredicted RBP18.21■□□□□ 0.51
VMP1-215ENST00000592619 DNAJC5BQ9UF47 199 aa17.88■□□□□ 0.45
VMP1-215ENST00000592619 ZBTB22O15209 634 aa17.76■□□□□ 0.43
VMP1-215ENST00000592619 RNF216Q9NWF9 866 aaPredicted RBP17.75■□□□□ 0.43
VMP1-215ENST00000592619 DCAF8L1A6NGE4 600 aa17.73■□□□□ 0.43
VMP1-215ENST00000592619 RNF39Q9H2S5 420 aa17.64■□□□□ 0.41
VMP1-215ENST00000592619 FOXD4L1Q9NU39 408 aa17.57■□□□□ 0.4
VMP1-215ENST00000592619 HOXD11P31277 338 aaPredicted RBP17.51■□□□□ 0.39
VMP1-215ENST00000592619 C1QBPQ07021 282 aaKnown RBP17.33■□□□□ 0.36
VMP1-215ENST00000592619 SLC4A2P04920 1241 aa17.18■□□□□ 0.34
VMP1-215ENST00000592619 MYCNP04198 464 aaPredicted RBP16.97■□□□□ 0.31
VMP1-215ENST00000592619 ATXN8OSP0DMR3 200 aa16.96■□□□□ 0.31
VMP1-215ENST00000592619 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.68■□□□□ 0.261e-6■□□□□ 10.6
VMP1-215ENST00000592619 POTEHQ6S545 545 aa16.63■□□□□ 0.25
VMP1-215ENST00000592619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.53■□□□□ 0.24
VMP1-215ENST00000592619 HNRNPUL2Q1KMD3 747 aaKnown RBP16.53■□□□□ 0.24
VMP1-215ENST00000592619 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
VMP1-215ENST00000592619 U3KPZ7 1027 aaPredicted RBP16.45■□□□□ 0.22
VMP1-215ENST00000592619 ATF5Q9Y2D1 282 aaPredicted RBP16.43■□□□□ 0.22
VMP1-215ENST00000592619 FKBP8Q14318 412 aa16.41■□□□□ 0.22
VMP1-215ENST00000592619 DSG3P32926 999 aa16.3■□□□□ 0.2
VMP1-215ENST00000592619 AMER1Q5JTC6 1135 aaPredicted RBP16.25■□□□□ 0.19
VMP1-215ENST00000592619 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
VMP1-215ENST00000592619 CAPN15O75808 1086 aa16.23■□□□□ 0.19
VMP1-215ENST00000592619 APLP2Q06481 763 aa16.18■□□□□ 0.18
VMP1-215ENST00000592619 RTN4Q9NQC3 1192 aaKnown RBP16.18■□□□□ 0.18
VMP1-215ENST00000592619 ZNF219Q9P2Y4 722 aaPredicted RBP16.12■□□□□ 0.17
VMP1-215ENST00000592619 ABCB7O75027 752 aa15.81■□□□□ 0.12
VMP1-215ENST00000592619 TRHP20396 242 aaPredicted RBP15.81■□□□□ 0.12
VMP1-215ENST00000592619 SLC24A1O60721 1099 aa15.79■□□□□ 0.12
VMP1-215ENST00000592619 MKRN4PQ13434 485 aaPredicted RBP15.78■□□□□ 0.12
VMP1-215ENST00000592619 SPDYE4A6NLX3 237 aa15.75■□□□□ 0.11
VMP1-215ENST00000592619 FBLN2P98095 1184 aa15.71■□□□□ 0.11
VMP1-215ENST00000592619 FBXO3Q9UK99 471 aa15.71■□□□□ 0.11
VMP1-215ENST00000592619 POLA2Q14181 598 aa15.68■□□□□ 0.1
VMP1-215ENST00000592619 PROM2Q8N271 834 aa15.67■□□□□ 0.1
VMP1-215ENST00000592619 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
VMP1-215ENST00000592619 ZBTB12Q9Y330 459 aaPredicted RBP15.52■□□□□ 0.08
VMP1-215ENST00000592619 CHRDL2Q6WN34 429 aa15.49■□□□□ 0.07
VMP1-215ENST00000592619 VASPP50552 380 aaPredicted RBP15.44■□□□□ 0.06
VMP1-215ENST00000592619 IFNLR1Q8IU57 520 aaPredicted RBP15.29■□□□□ 0.04
VMP1-215ENST00000592619 SP7Q8TDD2 431 aaPredicted RBP15.27■□□□□ 0.04
VMP1-215ENST00000592619 ZNF692Q9BU19 519 aaPredicted RBP15.16■□□□□ 0.02
VMP1-215ENST00000592619 SPDYE2BA6NHP3 402 aa15.15■□□□□ 0.02
VMP1-215ENST00000592619 SPDYE6P0CI01 402 aa15.15■□□□□ 0.02
VMP1-215ENST00000592619 SPDYE2Q495Y8 402 aa15.15■□□□□ 0.02
VMP1-215ENST00000592619 SSUH2Q9Y2M2 353 aa15.11■□□□□ 0.01
VMP1-215ENST00000592619 STAG3Q9UJ98 1225 aa15.1■□□□□ 0.01
VMP1-215ENST00000592619 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
VMP1-215ENST00000592619 PKD2Q13563 968 aa15.05■□□□□ -0
VMP1-215ENST00000592619 AKT1S1Q96B36 256 aa15.04■□□□□ -0
VMP1-215ENST00000592619 PIP4P2Q8N4L2 257 aa14.99□□□□□ -0.01
VMP1-215ENST00000592619 SPOCK2Q92563 424 aa14.99□□□□□ -0.01
VMP1-215ENST00000592619 PLCB2Q00722 1185 aa14.98□□□□□ -0.01
VMP1-215ENST00000592619 PABPN1Q86U42 306 aaKnown RBP eCLIP14.97□□□□□ -0.01
VMP1-215ENST00000592619 KLHL34Q8N239 644 aa14.97□□□□□ -0.01
VMP1-215ENST00000592619 REM2Q8IYK8 340 aaPredicted RBP14.94□□□□□ -0.02
VMP1-215ENST00000592619 HAX1O00165 279 aa14.9□□□□□ -0.02
VMP1-215ENST00000592619 PLCD3Q8N3E9 789 aa14.9□□□□□ -0.02
VMP1-215ENST00000592619 DCAF8L2P0C7V8 631 aa14.89□□□□□ -0.03
VMP1-215ENST00000592619 MIER1Q8N108 512 aa14.86□□□□□ -0.03
VMP1-215ENST00000592619 ECM2O94769 699 aaPredicted RBP14.8□□□□□ -0.04
VMP1-215ENST00000592619 PITPNM1O00562 1244 aa14.78□□□□□ -0.04
VMP1-215ENST00000592619 FXR2P51116 673 aaKnown RBP eCLIP14.78□□□□□ -0.04
VMP1-215ENST00000592619 ZBTB47Q9UFB7 747 aaPredicted RBP14.75□□□□□ -0.05
VMP1-215ENST00000592619 PLEKHG5O94827 1062 aa14.74□□□□□ -0.05
VMP1-215ENST00000592619 EVX2Q03828 476 aa14.71□□□□□ -0.05
VMP1-215ENST00000592619 HAP1P54257 671 aaPredicted RBP14.7□□□□□ -0.06
VMP1-215ENST00000592619 BBXQ8WY36 941 aaPredicted RBP14.69□□□□□ -0.06
VMP1-215ENST00000592619 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.65□□□□□ -0.06
VMP1-215ENST00000592619 RGL2O15211 777 aa14.63□□□□□ -0.07
VMP1-215ENST00000592619 NPM1P06748 294 aaKnown RBP eCLIP14.62□□□□□ -0.07
VMP1-215ENST00000592619 VSIG10Q8N0Z9 540 aa14.6□□□□□ -0.07
VMP1-215ENST00000592619 TRIM41Q8WV44 630 aa14.58□□□□□ -0.08
VMP1-215ENST00000592619 CIZ1Q9ULV3 898 aaPredicted RBP14.58□□□□□ -0.08
VMP1-215ENST00000592619 SPDYE1Q8NFV5 336 aaPredicted RBP14.52□□□□□ -0.09
VMP1-215ENST00000592619 PAXIP1Q6ZW49 1069 aaPredicted RBP14.5□□□□□ -0.09
VMP1-215ENST00000592619 GSE1Q14687 1217 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms