RNA–Protein interactions for RNA: ENST00000586080.1

R3HDM4-202, Transcript of R3H domain containing 4, humanhuman

TSL 4

Gene R3HDM4, Length 537 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-202ENST00000586080 NISCHQ9Y2I1 1504 aa52.74■■■■■ 6.03
R3HDM4-202ENST00000586080 CCDC180Q9P1Z9 1646 aa46.88■■■■■ 5.1
R3HDM4-202ENST00000586080 ABCC9O60706 1549 aa46.19■■■■■ 4.99
R3HDM4-202ENST00000586080 DCAF8L2P0C7V8 631 aa44.31■■■■■ 4.68
R3HDM4-202ENST00000586080 RB1CC1Q8TDY2 1594 aa44.27■■■■■ 4.68
R3HDM4-202ENST00000586080 NACADO15069 1562 aa44.16■■■■■ 4.66
R3HDM4-202ENST00000586080 ZCCHC6Q5VYS8 1495 aaKnown RBP43.91■■■■■ 4.62
R3HDM4-202ENST00000586080 MYO15BQ96JP2 1530 aa43.78■■■■■ 4.6
R3HDM4-202ENST00000586080 DCAF1Q9Y4B6 1507 aa43.56■■■■■ 4.56
R3HDM4-202ENST00000586080 PABPN1Q86U42 306 aaKnown RBP eCLIP43.17■■■■■ 4.5
R3HDM4-202ENST00000586080 UNC13AQ9UPW8 1703 aa43.14■■■■■ 4.5
R3HDM4-202ENST00000586080 SCRIBQ14160 1630 aa42.9■■■■■ 4.46
R3HDM4-202ENST00000586080 BICRAQ9NZM4 1560 aa42.9■■■■■ 4.46
R3HDM4-202ENST00000586080 DNAJC5BQ9UF47 199 aa42.48■■■■■ 4.39
R3HDM4-202ENST00000586080 SHROOM4Q9ULL8 1493 aa42.43■■■■■ 4.38
R3HDM4-202ENST00000586080 EIF4G1Q04637 1599 aaKnown RBP41.83■■■■■ 4.29
R3HDM4-202ENST00000586080 CC2D2AQ9P2K1 1620 aa41.69■■■■■ 4.26
R3HDM4-202ENST00000586080 CECR2Q9BXF3 1484 aa41.49■■■■■ 4.23
R3HDM4-202ENST00000586080 SMARCA4P51532 1647 aa40.95■■■■■ 4.15
R3HDM4-202ENST00000586080 BAZ1AQ9NRL2 1556 aaPredicted RBP40.9■■■■■ 4.14
R3HDM4-202ENST00000586080 ATAD2BQ9ULI0 1458 aa40.79■■■■■ 4.12
R3HDM4-202ENST00000586080 NCAPD3P42695 1498 aa40.76■■■■■ 4.12
R3HDM4-202ENST00000586080 SMARCA2P51531 1590 aa40.73■■■■■ 4.11
R3HDM4-202ENST00000586080 MROH2BQ7Z745 1585 aa40.67■■■■■ 4.1
R3HDM4-202ENST00000586080 HMGXB3Q12766 1538 aa40.54■■■■■ 4.08
R3HDM4-202ENST00000586080 PEG3Q9GZU2 1588 aa40.49■■■■■ 4.07
R3HDM4-202ENST00000586080 BAZ1BQ9UIG0 1483 aaKnown RBP40.49■■■■■ 4.07
R3HDM4-202ENST00000586080 WIZO95785 1651 aa40.2■■■■■ 4.03
R3HDM4-202ENST00000586080 RSF1Q96T23 1441 aaPredicted RBP40.16■■■■■ 4.02
R3HDM4-202ENST00000586080 NESP48681 1621 aa39.9■■■■□ 3.98
R3HDM4-202ENST00000586080 ERCC6Q03468 1493 aa39.86■■■■□ 3.97
R3HDM4-202ENST00000586080 TOP2AP11388 1531 aaKnown RBP39.79■■■■□ 3.96
R3HDM4-202ENST00000586080 LAMC3Q9Y6N6 1575 aa39.7■■■■□ 3.95
R3HDM4-202ENST00000586080 CADPSQ9ULU8 1353 aa39.6■■■■□ 3.93
R3HDM4-202ENST00000586080 PDS5BQ9NTI5 1447 aa39.5■■■■□ 3.91
R3HDM4-202ENST00000586080 CUX2O14529 1486 aa39.39■■■■□ 3.9
R3HDM4-202ENST00000586080 KIF21AQ7Z4S6 1674 aa39.34■■■■□ 3.89
R3HDM4-202ENST00000586080 CCDC88BA6NC98 1476 aa39.33■■■■□ 3.89
R3HDM4-202ENST00000586080 CFTRP13569 1480 aa39.31■■■■□ 3.88
R3HDM4-202ENST00000586080 THOC2Q8NI27 1593 aaKnown RBP39.26■■■■□ 3.88
R3HDM4-202ENST00000586080 FANCD2Q9BXW9 1451 aa39.17■■■■□ 3.86
R3HDM4-202ENST00000586080 SUPT5HO00267 1087 aaKnown RBP39.16■■■■□ 3.86
R3HDM4-202ENST00000586080 CEP164Q9UPV0 1460 aa39.15■■■■□ 3.86
R3HDM4-202ENST00000586080 MRC2Q9UBG0 1479 aa39.11■■■■□ 3.85
R3HDM4-202ENST00000586080 WDR62O43379 1518 aa38.94■■■■□ 3.82
R3HDM4-202ENST00000586080 PRDM2Q13029 1718 aa38.89■■■■□ 3.82
R3HDM4-202ENST00000586080 URB2Q14146 1524 aaKnown RBP38.78■■■■□ 3.8
R3HDM4-202ENST00000586080 TOPBP1Q92547 1522 aa38.51■■■■□ 3.76
R3HDM4-202ENST00000586080 ABCC8Q09428 1581 aa38.46■■■■□ 3.75
R3HDM4-202ENST00000586080 DNMBPQ6XZF7 1577 aa38.44■■■■□ 3.74
R3HDM4-202ENST00000586080 DNAJC5Q9H3Z4 198 aa38.37■■■■□ 3.73
R3HDM4-202ENST00000586080 IFT140Q96RY7 1462 aa38.32■■■■□ 3.72
R3HDM4-202ENST00000586080 POLA1P09884 1462 aaPredicted RBP38.18■■■■□ 3.7
R3HDM4-202ENST00000586080 ZNF608Q9ULD9 1512 aaPredicted RBP38.17■■■■□ 3.7
R3HDM4-202ENST00000586080 CUX1P39880 1505 aa38.17■■■■□ 3.7
R3HDM4-202ENST00000586080 FGD5Q6ZNL6 1462 aa38.09■■■■□ 3.69
R3HDM4-202ENST00000586080 RAD54L2Q9Y4B4 1467 aa38.05■■■■□ 3.68
R3HDM4-202ENST00000586080 TARBP1Q13395 1621 aaKnown RBP38.05■■■■□ 3.68
R3HDM4-202ENST00000586080 SOGA1O94964 1423 aa38.04■■■■□ 3.68
R3HDM4-202ENST00000586080 EIF4G3O43432 1585 aaKnown RBP37.98■■■■□ 3.67
R3HDM4-202ENST00000586080 AQRO60306 1485 aaKnown RBP eCLIP37.95■■■■□ 3.673e-8■■■■■ 33.6
R3HDM4-202ENST00000586080 WRNQ14191 1432 aaPredicted RBP eCLIP37.9■■■■□ 3.66
R3HDM4-202ENST00000586080 TDRD9Q8NDG6 1382 aaKnown RBP37.88■■■■□ 3.65
R3HDM4-202ENST00000586080 SYNJ1O43426 1573 aa37.77■■■■□ 3.64
R3HDM4-202ENST00000586080 OSCARQ8IYS5 282 aa37.77■■■■□ 3.64
R3HDM4-202ENST00000586080 TOP2BQ02880 1626 aa37.76■■■■□ 3.63
R3HDM4-202ENST00000586080 BIVM-ERCC5R4GMW8 1640 aa37.72■■■■□ 3.63
R3HDM4-202ENST00000586080 WDR97A6NE52 1622 aa37.71■■■■□ 3.63
R3HDM4-202ENST00000586080 ABCA10Q8WWZ4 1543 aa37.67■■■■□ 3.62
R3HDM4-202ENST00000586080 FBLN2P98095 1184 aa37.62■■■■□ 3.61
R3HDM4-202ENST00000586080 SNAPC4Q5SXM2 1469 aa37.61■■■■□ 3.61
R3HDM4-202ENST00000586080 GRIN2BQ13224 1484 aa37.6■■■■□ 3.61
R3HDM4-202ENST00000586080 GAPVD1Q14C86 1478 aa37.59■■■■□ 3.61
R3HDM4-202ENST00000586080 ABCA5Q8WWZ7 1642 aa37.5■■■■□ 3.59
R3HDM4-202ENST00000586080 MAGI1Q96QZ7 1491 aaPredicted RBP37.5■■■■□ 3.59
R3HDM4-202ENST00000586080 CHD1O14646 1710 aa37.49■■■■□ 3.59
R3HDM4-202ENST00000586080 PBRM1Q86U86 1689 aa37.45■■■■□ 3.59
R3HDM4-202ENST00000586080 CHMP7Q8WUX9 453 aaPredicted RBP37.44■■■■□ 3.58
R3HDM4-202ENST00000586080 SYNJ2O15056 1496 aa37.37■■■■□ 3.57
R3HDM4-202ENST00000586080 ERICH3Q5RHP9 1530 aa37.2■■■■□ 3.55
R3HDM4-202ENST00000586080 TRIM41Q8WV44 630 aa37.2■■■■□ 3.55
R3HDM4-202ENST00000586080 ADAMTS12P58397 1594 aa37.2■■■■□ 3.55
R3HDM4-202ENST00000586080 FHAD1B1AJZ9 1412 aa37.15■■■■□ 3.54
R3HDM4-202ENST00000586080 ARHGEF11O15085 1522 aa37.15■■■■□ 3.54
R3HDM4-202ENST00000586080 RIMBP3CA6NJZ7 1639 aa37.14■■■■□ 3.54
R3HDM4-202ENST00000586080 RIMBP3BA6NNM3 1639 aa37.14■■■■□ 3.54
R3HDM4-202ENST00000586080 RIMBP3Q9UFD9 1639 aa37.14■■■■□ 3.54
R3HDM4-202ENST00000586080 KIF27Q86VH2 1401 aa37.12■■■■□ 3.53
R3HDM4-202ENST00000586080 GRIN2AQ12879 1464 aa37.12■■■■□ 3.53
R3HDM4-202ENST00000586080 CLASP1Q7Z460 1538 aa37.1■■■■□ 3.53
R3HDM4-202ENST00000586080 IGF1RP08069 1367 aa36.95■■■■□ 3.51
R3HDM4-202ENST00000586080 NUP160Q12769 1436 aa36.93■■■■□ 3.5
R3HDM4-202ENST00000586080 CEP170Q5SW79 1584 aa36.92■■■■□ 3.5
R3HDM4-202ENST00000586080 CYB5RLQ6IPT4 315 aa36.88■■■■□ 3.49
R3HDM4-202ENST00000586080 ARAP1Q96P48 1450 aa36.85■■■■□ 3.49
R3HDM4-202ENST00000586080 CUL7Q14999 1698 aa36.83■■■■□ 3.49
R3HDM4-202ENST00000586080 CARMIL1Q5VZK9 1371 aa36.77■■■■□ 3.48
R3HDM4-202ENST00000586080 RUSC2Q8N2Y8 1516 aa36.73■■■■□ 3.47
R3HDM4-202ENST00000586080 ERCC6L2Q5T890 1561 aa36.62■■■■□ 3.45
R3HDM4-202ENST00000586080 SHROOM2Q13796 1616 aa36.61■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms