RNA–Protein interactions for RNA: ENST00000372077.8

VEGFA-206, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 2,834 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-206ENST00000372077 NISCHQ9Y2I1 1504 aa42.59■■■■■ 4.41
VEGFA-206ENST00000372077 CCDC180Q9P1Z9 1646 aa37.35■■■■□ 3.57
VEGFA-206ENST00000372077 ZCCHC6Q5VYS8 1495 aaKnown RBP35.7■■■■□ 3.31
VEGFA-206ENST00000372077 ABCC9O60706 1549 aa35.58■■■■□ 3.29
VEGFA-206ENST00000372077 DCAF1Q9Y4B6 1507 aa35.28■■■■□ 3.24
VEGFA-206ENST00000372077 DCAF8L2P0C7V8 631 aa35.14■■■■□ 3.22
VEGFA-206ENST00000372077 MYO15BQ96JP2 1530 aa35.03■■■■□ 3.2
VEGFA-206ENST00000372077 NACADO15069 1562 aa34.88■■■■□ 3.17
VEGFA-206ENST00000372077 RB1CC1Q8TDY2 1594 aa34.65■■■■□ 3.14
VEGFA-206ENST00000372077 SHROOM4Q9ULL8 1493 aa34.3■■■■□ 3.08
VEGFA-206ENST00000372077 SCRIBQ14160 1630 aa34.19■■■■□ 3.06
VEGFA-206ENST00000372077 UNC13AQ9UPW8 1703 aa33.92■■■■□ 3.02
VEGFA-206ENST00000372077 BICRAQ9NZM4 1560 aa33.63■■■□□ 2.97
VEGFA-206ENST00000372077 PABPN1Q86U42 306 aaKnown RBP eCLIP33.45■■■□□ 2.957e-13■□□□□ 11.3
VEGFA-206ENST00000372077 CECR2Q9BXF3 1484 aa33.09■■■□□ 2.89
VEGFA-206ENST00000372077 BAZ1AQ9NRL2 1556 aaPredicted RBP32.91■■■□□ 2.86
VEGFA-206ENST00000372077 RSF1Q96T23 1441 aaPredicted RBP32.87■■■□□ 2.85
VEGFA-206ENST00000372077 MROH2BQ7Z745 1585 aa32.86■■■□□ 2.85
VEGFA-206ENST00000372077 SUPT5HO00267 1087 aaKnown RBP32.82■■■□□ 2.84
VEGFA-206ENST00000372077 SMARCA4P51532 1647 aa32.81■■■□□ 2.84
VEGFA-206ENST00000372077 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
VEGFA-206ENST00000372077 WIZO95785 1651 aa32.55■■■□□ 2.8
VEGFA-206ENST00000372077 PEG3Q9GZU2 1588 aa32.48■■■□□ 2.79
VEGFA-206ENST00000372077 ATAD2BQ9ULI0 1458 aa32.38■■■□□ 2.77
VEGFA-206ENST00000372077 SMARCA2P51531 1590 aa32.36■■■□□ 2.77
VEGFA-206ENST00000372077 TOP2AP11388 1531 aaKnown RBP32.24■■■□□ 2.75
VEGFA-206ENST00000372077 CC2D2AQ9P2K1 1620 aa32.23■■■□□ 2.75
VEGFA-206ENST00000372077 NCAPD3P42695 1498 aa32.21■■■□□ 2.75
VEGFA-206ENST00000372077 BAZ1BQ9UIG0 1483 aaKnown RBP32.14■■■□□ 2.74
VEGFA-206ENST00000372077 HMGXB3Q12766 1538 aa32.12■■■□□ 2.73
VEGFA-206ENST00000372077 CCDC88BA6NC98 1476 aa31.89■■■□□ 2.7
VEGFA-206ENST00000372077 DNAJC5BQ9UF47 199 aa31.77■■■□□ 2.68
VEGFA-206ENST00000372077 CFTRP13569 1480 aa31.36■■■□□ 2.61
VEGFA-206ENST00000372077 CADPSQ9ULU8 1353 aa31.32■■■□□ 2.6
VEGFA-206ENST00000372077 CHIC1Q5VXU3 224 aa31.28■■■□□ 2.6
VEGFA-206ENST00000372077 PRDM2Q13029 1718 aa31.16■■■□□ 2.58
VEGFA-206ENST00000372077 LAMC3Q9Y6N6 1575 aa31.15■■■□□ 2.58
VEGFA-206ENST00000372077 NESP48681 1621 aa31.12■■■□□ 2.57
VEGFA-206ENST00000372077 ABCC8Q09428 1581 aa31.04■■■□□ 2.56
VEGFA-206ENST00000372077 FANCD2Q9BXW9 1451 aa30.95■■■□□ 2.54
VEGFA-206ENST00000372077 TRIM41Q8WV44 630 aa30.93■■■□□ 2.54
VEGFA-206ENST00000372077 WRNQ14191 1432 aaPredicted RBP eCLIP30.93■■■□□ 2.541e-6■■■■□ 26.4
VEGFA-206ENST00000372077 PDS5BQ9NTI5 1447 aa30.91■■■□□ 2.54
VEGFA-206ENST00000372077 SYNJ1O43426 1573 aa30.81■■■□□ 2.52
VEGFA-206ENST00000372077 CEP164Q9UPV0 1460 aa30.79■■■□□ 2.52
VEGFA-206ENST00000372077 KIF21AQ7Z4S6 1674 aa30.76■■■□□ 2.51
VEGFA-206ENST00000372077 CUX1P39880 1505 aa30.75■■■□□ 2.51
VEGFA-206ENST00000372077 TOP2BQ02880 1626 aa30.75■■■□□ 2.51
VEGFA-206ENST00000372077 BIVM-ERCC5R4GMW8 1640 aa30.74■■■□□ 2.51
VEGFA-206ENST00000372077 DNMBPQ6XZF7 1577 aa30.62■■■□□ 2.49
VEGFA-206ENST00000372077 URB2Q14146 1524 aaKnown RBP30.59■■■□□ 2.49
VEGFA-206ENST00000372077 TOPBP1Q92547 1522 aa30.58■■■□□ 2.49
VEGFA-206ENST00000372077 ERCC6Q03468 1493 aa30.54■■■□□ 2.48
VEGFA-206ENST00000372077 MRC2Q9UBG0 1479 aa30.54■■■□□ 2.48
VEGFA-206ENST00000372077 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
VEGFA-206ENST00000372077 WDR62O43379 1518 aa30.41■■■□□ 2.46
VEGFA-206ENST00000372077 THOC2Q8NI27 1593 aaKnown RBP30.4■■■□□ 2.46
VEGFA-206ENST00000372077 POLA1P09884 1462 aaPredicted RBP30.4■■■□□ 2.46
VEGFA-206ENST00000372077 SOGA1O94964 1423 aa30.39■■■□□ 2.46
VEGFA-206ENST00000372077 EEA1Q15075 1411 aa30.31■■■□□ 2.44
VEGFA-206ENST00000372077 RUSC2Q8N2Y8 1516 aa30.3■■■□□ 2.44
VEGFA-206ENST00000372077 FAM9AQ8IZU1 332 aaPredicted RBP30.28■■■□□ 2.44
VEGFA-206ENST00000372077 RAD54L2Q9Y4B4 1467 aa30.27■■■□□ 2.44
VEGFA-206ENST00000372077 ABCA10Q8WWZ4 1543 aa30.23■■■□□ 2.43
VEGFA-206ENST00000372077 CUX2O14529 1486 aa30.2■■■□□ 2.43
VEGFA-206ENST00000372077 KIF27Q86VH2 1401 aa30.19■■■□□ 2.42
VEGFA-206ENST00000372077 TARBP1Q13395 1621 aaKnown RBP30.17■■■□□ 2.42
VEGFA-206ENST00000372077 WDR97A6NE52 1622 aa30.17■■■□□ 2.42
VEGFA-206ENST00000372077 CSRNP3Q8WYN3 585 aa30.15■■■□□ 2.42
VEGFA-206ENST00000372077 IFT140Q96RY7 1462 aa30.11■■■□□ 2.41
VEGFA-206ENST00000372077 LOC105371045A0A1W2PR82 267 aa30.01■■■□□ 2.4
VEGFA-206ENST00000372077 ABCA5Q8WWZ7 1642 aa30.01■■■□□ 2.39
VEGFA-206ENST00000372077 TDRD9Q8NDG6 1382 aaKnown RBP30■■■□□ 2.39
VEGFA-206ENST00000372077 IGF1RP08069 1367 aa29.98■■■□□ 2.39
VEGFA-206ENST00000372077 GAPVD1Q14C86 1478 aa29.95■■■□□ 2.38
VEGFA-206ENST00000372077 KIF21BO75037 1637 aa29.92■■■□□ 2.38
VEGFA-206ENST00000372077 ZNF608Q9ULD9 1512 aaPredicted RBP29.92■■■□□ 2.38
VEGFA-206ENST00000372077 PRXQ9BXM0 1461 aa29.92■■■□□ 2.38
VEGFA-206ENST00000372077 AQRO60306 1485 aaKnown RBP eCLIP29.88■■■□□ 2.371e-8■■■■■ 26.8
VEGFA-206ENST00000372077 ERICH3Q5RHP9 1530 aa29.87■■■□□ 2.37
VEGFA-206ENST00000372077 GOLGA3Q08378 1498 aa29.83■■■□□ 2.37
VEGFA-206ENST00000372077 EIF4G3O43432 1585 aaKnown RBP29.81■■■□□ 2.36
VEGFA-206ENST00000372077 CARMIL1Q5VZK9 1371 aa29.81■■■□□ 2.36
VEGFA-206ENST00000372077 PBRM1Q86U86 1689 aa29.8■■■□□ 2.36
VEGFA-206ENST00000372077 EHMT2Q96KQ7 1210 aa29.8■■■□□ 2.36
VEGFA-206ENST00000372077 RAPGEF2Q9Y4G8 1499 aa29.79■■■□□ 2.36
VEGFA-206ENST00000372077 GRIN2BQ13224 1484 aa29.79■■■□□ 2.36
VEGFA-206ENST00000372077 CUL7Q14999 1698 aa29.79■■■□□ 2.36
VEGFA-206ENST00000372077 TNIKQ9UKE5 1360 aa29.69■■■□□ 2.34
VEGFA-206ENST00000372077 UBTFP17480 764 aaKnown RBP29.66■■■□□ 2.34
VEGFA-206ENST00000372077 FHAD1B1AJZ9 1412 aa29.64■■■□□ 2.33
VEGFA-206ENST00000372077 ADAMTS12P58397 1594 aa29.63■■■□□ 2.33
VEGFA-206ENST00000372077 SNAPC4Q5SXM2 1469 aa29.61■■■□□ 2.33
VEGFA-206ENST00000372077 MAGI1Q96QZ7 1491 aaPredicted RBP29.6■■■□□ 2.33
VEGFA-206ENST00000372077 SYNJ2O15056 1496 aa29.47■■■□□ 2.31
VEGFA-206ENST00000372077 PCGF6Q9BYE7 350 aa29.45■■■□□ 2.31
VEGFA-206ENST00000372077 CEP162Q5TB80 1403 aa29.45■■■□□ 2.31
VEGFA-206ENST00000372077 GRIN2AQ12879 1464 aa29.42■■■□□ 2.3
VEGFA-206ENST00000372077 CHMP7Q8WUX9 453 aaPredicted RBP29.38■■■□□ 2.29
VEGFA-206ENST00000372077 CTTNBP2Q8WZ74 1663 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms