RNA–Protein interactions for RNA: ENST00000372067.7

VEGFA-205, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 3,535 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-205ENST00000372067 NISCHQ9Y2I1 1504 aa35.12■■■■□ 3.21
VEGFA-205ENST00000372067 DCAF8L2P0C7V8 631 aa30.55■■■□□ 2.48
VEGFA-205ENST00000372067 SHROOM4Q9ULL8 1493 aa30.54■■■□□ 2.48
VEGFA-205ENST00000372067 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
VEGFA-205ENST00000372067 CCDC180Q9P1Z9 1646 aa29.69■■■□□ 2.34
VEGFA-205ENST00000372067 ZCCHC6Q5VYS8 1495 aaKnown RBP29.51■■■□□ 2.31
VEGFA-205ENST00000372067 ABCC9O60706 1549 aa28.66■■■□□ 2.18
VEGFA-205ENST00000372067 DCAF1Q9Y4B6 1507 aa28.47■■■□□ 2.15
VEGFA-205ENST00000372067 CHIC1Q5VXU3 224 aa28.41■■■□□ 2.14
VEGFA-205ENST00000372067 SCRIBQ14160 1630 aa28.33■■■□□ 2.13
VEGFA-205ENST00000372067 MYO15BQ96JP2 1530 aa27.88■■■□□ 2.05
VEGFA-205ENST00000372067 EHMT2Q96KQ7 1210 aa27.85■■■□□ 2.05
VEGFA-205ENST00000372067 LOC105371045A0A1W2PR82 267 aa27.81■■■□□ 2.04
VEGFA-205ENST00000372067 FAM9AQ8IZU1 332 aaPredicted RBP27.81■■■□□ 2.04
VEGFA-205ENST00000372067 NACADO15069 1562 aa27.8■■■□□ 2.04
VEGFA-205ENST00000372067 RSF1Q96T23 1441 aaPredicted RBP27.77■■■□□ 2.04
VEGFA-205ENST00000372067 PELP1Q8IZL8 1130 aaKnown RBP27.76■■■□□ 2.03
VEGFA-205ENST00000372067 TRIM41Q8WV44 630 aa27.76■■■□□ 2.03
VEGFA-205ENST00000372067 PABPN1Q86U42 306 aaKnown RBP eCLIP27.6■■■□□ 2.017e-13■□□□□ 11.3
VEGFA-205ENST00000372067 CECR2Q9BXF3 1484 aa27.6■■■□□ 2.01
VEGFA-205ENST00000372067 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
VEGFA-205ENST00000372067 PCGF6Q9BYE7 350 aa27.56■■■□□ 2
VEGFA-205ENST00000372067 HRCP23327 699 aa27.49■■□□□ 1.99
VEGFA-205ENST00000372067 MROH2BQ7Z745 1585 aa27.37■■□□□ 1.97
VEGFA-205ENST00000372067 WIZO95785 1651 aa27.16■■□□□ 1.94
VEGFA-205ENST00000372067 PPARGC1BQ86YN6 1023 aaKnown RBP27.11■■□□□ 1.93
VEGFA-205ENST00000372067 BAZ1AQ9NRL2 1556 aaPredicted RBP27.05■■□□□ 1.92
VEGFA-205ENST00000372067 MYT1Q01538 1121 aa26.86■■□□□ 1.89
VEGFA-205ENST00000372067 TRIM26Q12899 539 aaPredicted RBP26.86■■□□□ 1.89
VEGFA-205ENST00000372067 TTBK1Q5TCY1 1321 aaPredicted RBP26.8■■□□□ 1.88
VEGFA-205ENST00000372067 SMARCA4P51532 1647 aa26.76■■□□□ 1.88
VEGFA-205ENST00000372067 SCAF1Q9H7N4 1312 aaKnown RBP26.75■■□□□ 1.87
VEGFA-205ENST00000372067 CCDC88BA6NC98 1476 aa26.72■■□□□ 1.87
VEGFA-205ENST00000372067 UNC13AQ9UPW8 1703 aa26.69■■□□□ 1.86
VEGFA-205ENST00000372067 UBTFP17480 764 aaKnown RBP26.69■■□□□ 1.86
VEGFA-205ENST00000372067 TOP2AP11388 1531 aaKnown RBP26.66■■□□□ 1.86
VEGFA-205ENST00000372067 ABCC8Q09428 1581 aa26.6■■□□□ 1.85
VEGFA-205ENST00000372067 RANGAP1P46060 587 aaPredicted RBP26.57■■□□□ 1.84
VEGFA-205ENST00000372067 BICRAQ9NZM4 1560 aa26.53■■□□□ 1.84
VEGFA-205ENST00000372067 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
VEGFA-205ENST00000372067 BAZ1BQ9UIG0 1483 aaKnown RBP26.42■■□□□ 1.82
VEGFA-205ENST00000372067 CSRNP3Q8WYN3 585 aa26.42■■□□□ 1.82
VEGFA-205ENST00000372067 SOGA1O94964 1423 aa26.36■■□□□ 1.81
VEGFA-205ENST00000372067 ATAD2BQ9ULI0 1458 aa26.33■■□□□ 1.8
VEGFA-205ENST00000372067 WRNQ14191 1432 aaPredicted RBP eCLIP26.29■■□□□ 1.81e-6■■■■□ 26.4
VEGFA-205ENST00000372067 RUSC2Q8N2Y8 1516 aa26.18■■□□□ 1.78
VEGFA-205ENST00000372067 ZEB1P37275 1124 aaPredicted RBP26.15■■□□□ 1.78
VEGFA-205ENST00000372067 APLP2Q06481 763 aa26.14■■□□□ 1.78
VEGFA-205ENST00000372067 CCER1Q8TC90 406 aaPredicted RBP26.14■■□□□ 1.78
VEGFA-205ENST00000372067 EIF4G1Q04637 1599 aaKnown RBP26.13■■□□□ 1.77
VEGFA-205ENST00000372067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.1■■□□□ 1.77
VEGFA-205ENST00000372067 CEP162Q5TB80 1403 aa26.09■■□□□ 1.77
VEGFA-205ENST00000372067 EEA1Q15075 1411 aa26.03■■□□□ 1.76
VEGFA-205ENST00000372067 TNIKQ9UKE5 1360 aa25.98■■□□□ 1.75
VEGFA-205ENST00000372067 PEG3Q9GZU2 1588 aa25.96■■□□□ 1.75
VEGFA-205ENST00000372067 GOLGA3Q08378 1498 aa25.95■■□□□ 1.74
VEGFA-205ENST00000372067 SYNJ1O43426 1573 aa25.88■■□□□ 1.73
VEGFA-205ENST00000372067 HNRNPUL2Q1KMD3 747 aaKnown RBP25.87■■□□□ 1.73
VEGFA-205ENST00000372067 CEP164Q9UPV0 1460 aa25.81■■□□□ 1.72
VEGFA-205ENST00000372067 CLIP1P30622 1438 aa25.79■■□□□ 1.72
VEGFA-205ENST00000372067 NCAPD3P42695 1498 aa25.78■■□□□ 1.72
VEGFA-205ENST00000372067 RAPGEF2Q9Y4G8 1499 aa25.68■■□□□ 1.7
VEGFA-205ENST00000372067 ATP1B4Q9UN42 357 aaPredicted RBP25.68■■□□□ 1.7
VEGFA-205ENST00000372067 HMGXB3Q12766 1538 aa25.6■■□□□ 1.69
VEGFA-205ENST00000372067 NEUROD1Q13562 356 aa25.59■■□□□ 1.69
VEGFA-205ENST00000372067 ACIN1Q9UKV3 1341 aaKnown RBP25.57■■□□□ 1.68
VEGFA-205ENST00000372067 KIF27Q86VH2 1401 aa25.57■■□□□ 1.68
VEGFA-205ENST00000372067 CADPSQ9ULU8 1353 aa25.52■■□□□ 1.68
VEGFA-205ENST00000372067 ITGAEP38570 1179 aa25.52■■□□□ 1.68
VEGFA-205ENST00000372067 TOP2BQ02880 1626 aa25.51■■□□□ 1.67
VEGFA-205ENST00000372067 P3H3Q8IVL6 736 aa25.5■■□□□ 1.67
VEGFA-205ENST00000372067 CFTRP13569 1480 aa25.49■■□□□ 1.67
VEGFA-205ENST00000372067 GTF3C3Q9Y5Q9 886 aa25.48■■□□□ 1.67
VEGFA-205ENST00000372067 BCL11AQ9H165 835 aa25.47■■□□□ 1.67
VEGFA-205ENST00000372067 CUX1P39880 1505 aa25.46■■□□□ 1.67
VEGFA-205ENST00000372067 CUX2O14529 1486 aa25.46■■□□□ 1.67
VEGFA-205ENST00000372067 VPS8Q8N3P4 1428 aa25.44■■□□□ 1.66
VEGFA-205ENST00000372067 KIF21BO75037 1637 aa25.44■■□□□ 1.66
VEGFA-205ENST00000372067 CC2D2AQ9P2K1 1620 aa25.41■■□□□ 1.66
VEGFA-205ENST00000372067 PRKCSHP14314 528 aaPredicted RBP25.36■■□□□ 1.65
VEGFA-205ENST00000372067 KANK4Q5T7N3 995 aaPredicted RBP25.28■■□□□ 1.64
VEGFA-205ENST00000372067 CARMIL1Q5VZK9 1371 aa25.28■■□□□ 1.64
VEGFA-205ENST00000372067 BIVM-ERCC5R4GMW8 1640 aa25.27■■□□□ 1.64
VEGFA-205ENST00000372067 FANCD2Q9BXW9 1451 aa25.27■■□□□ 1.64
VEGFA-205ENST00000372067 FGD5Q6ZNL6 1462 aa25.25■■□□□ 1.63
VEGFA-205ENST00000372067 PRXQ9BXM0 1461 aa25.25■■□□□ 1.63
VEGFA-205ENST00000372067 NESP48681 1621 aa25.24■■□□□ 1.63
VEGFA-205ENST00000372067 DNAJC5BQ9UF47 199 aa25.22■■□□□ 1.63
VEGFA-205ENST00000372067 DIEXFQ68CQ4 756 aaKnown RBP25.21■■□□□ 1.63
VEGFA-205ENST00000372067 IGF1RP08069 1367 aa25.21■■□□□ 1.63
VEGFA-205ENST00000372067 FAM50AQ14320 339 aaKnown RBP25.15■■□□□ 1.62
VEGFA-205ENST00000372067 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.62
VEGFA-205ENST00000372067 ERICH3Q5RHP9 1530 aa25.13■■□□□ 1.61
VEGFA-205ENST00000372067 ARAP1Q96P48 1450 aa25.1■■□□□ 1.61
VEGFA-205ENST00000372067 TDRD9Q8NDG6 1382 aaKnown RBP25.07■■□□□ 1.6
VEGFA-205ENST00000372067 ZNF316A6NFI3 1004 aaPredicted RBP25.03■■□□□ 1.6
VEGFA-205ENST00000372067 CENPBP07199 599 aaPredicted RBP25.03■■□□□ 1.6
VEGFA-205ENST00000372067 ARHGAP35Q9NRY4 1499 aa24.99■■□□□ 1.59
VEGFA-205ENST00000372067 YTHDC1Q96MU7 727 aaKnown RBP24.98■■□□□ 1.59
VEGFA-205ENST00000372067 ARID3CA6NKF2 412 aa24.95■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms