RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 NISCHQ9Y2I1 1504 aa45.01■■■■■ 4.8
SSU72-203ENST00000378725 CCDC180Q9P1Z9 1646 aa39.8■■■■□ 3.96
SSU72-203ENST00000378725 ABCC9O60706 1549 aa38.69■■■■□ 3.78
SSU72-203ENST00000378725 ZCCHC6Q5VYS8 1495 aaKnown RBP37.54■■■■□ 3.6
SSU72-203ENST00000378725 DCAF8L2P0C7V8 631 aa37.47■■■■□ 3.59
SSU72-203ENST00000378725 NACADO15069 1562 aa37.42■■■■□ 3.58
SSU72-203ENST00000378725 RB1CC1Q8TDY2 1594 aa37.35■■■■□ 3.57
SSU72-203ENST00000378725 MYO15BQ96JP2 1530 aa37.34■■■■□ 3.57
SSU72-203ENST00000378725 DCAF1Q9Y4B6 1507 aa37.28■■■■□ 3.56
SSU72-203ENST00000378725 UNC13AQ9UPW8 1703 aa36.42■■■■□ 3.42
SSU72-203ENST00000378725 SCRIBQ14160 1630 aa36.33■■■■□ 3.41
SSU72-203ENST00000378725 PABPN1Q86U42 306 aaKnown RBP eCLIP36.26■■■■□ 3.4
SSU72-203ENST00000378725 BICRAQ9NZM4 1560 aa36.23■■■■□ 3.39
SSU72-203ENST00000378725 SHROOM4Q9ULL8 1493 aa35.89■■■■□ 3.34
SSU72-203ENST00000378725 DNAJC5BQ9UF47 199 aa35.34■■■■□ 3.25
SSU72-203ENST00000378725 EIF4G1Q04637 1599 aaKnown RBP35.23■■■■□ 3.23
SSU72-203ENST00000378725 CECR2Q9BXF3 1484 aa35.03■■■■□ 3.2
SSU72-203ENST00000378725 CC2D2AQ9P2K1 1620 aa35■■■■□ 3.19
SSU72-203ENST00000378725 BAZ1AQ9NRL2 1556 aaPredicted RBP34.83■■■■□ 3.17
SSU72-203ENST00000378725 SMARCA4P51532 1647 aa34.81■■■■□ 3.16
SSU72-203ENST00000378725 MROH2BQ7Z745 1585 aa34.68■■■■□ 3.14
SSU72-203ENST00000378725 ATAD2BQ9ULI0 1458 aa34.61■■■■□ 3.13
SSU72-203ENST00000378725 NCAPD3P42695 1498 aa34.57■■■■□ 3.12
SSU72-203ENST00000378725 SMARCA2P51531 1590 aa34.54■■■■□ 3.12
SSU72-203ENST00000378725 PEG3Q9GZU2 1588 aa34.51■■■■□ 3.12
SSU72-203ENST00000378725 RSF1Q96T23 1441 aaPredicted RBP34.43■■■■□ 3.1
SSU72-203ENST00000378725 HMGXB3Q12766 1538 aa34.36■■■■□ 3.09
SSU72-203ENST00000378725 BAZ1BQ9UIG0 1483 aaKnown RBP34.29■■■■□ 3.08
SSU72-203ENST00000378725 WIZO95785 1651 aa34.28■■■■□ 3.08
SSU72-203ENST00000378725 TOP2AP11388 1531 aaKnown RBP33.95■■■■□ 3.03
SSU72-203ENST00000378725 SUPT5HO00267 1087 aaKnown RBP33.75■■■□□ 2.99
SSU72-203ENST00000378725 CCDC88BA6NC98 1476 aa33.6■■■□□ 2.97
SSU72-203ENST00000378725 NESP48681 1621 aa33.58■■■□□ 2.97
SSU72-203ENST00000378725 CADPSQ9ULU8 1353 aa33.58■■■□□ 2.97
SSU72-203ENST00000378725 LAMC3Q9Y6N6 1575 aa33.54■■■□□ 2.96
SSU72-203ENST00000378725 CFTRP13569 1480 aa33.43■■■□□ 2.94
SSU72-203ENST00000378725 PDS5BQ9NTI5 1447 aa33.34■■■□□ 2.93
SSU72-203ENST00000378725 ERCC6Q03468 1493 aa33.31■■■□□ 2.92
SSU72-203ENST00000378725 FANCD2Q9BXW9 1451 aa33.14■■■□□ 2.9
SSU72-203ENST00000378725 KIF21AQ7Z4S6 1674 aa33.11■■■□□ 2.89
SSU72-203ENST00000378725 CEP164Q9UPV0 1460 aa33.05■■■□□ 2.88
SSU72-203ENST00000378725 PRDM2Q13029 1718 aa33.04■■■□□ 2.88
SSU72-203ENST00000378725 THOC2Q8NI27 1593 aaKnown RBP32.97■■■□□ 2.87
SSU72-203ENST00000378725 MRC2Q9UBG0 1479 aa32.95■■■□□ 2.87
SSU72-203ENST00000378725 CUX2O14529 1486 aa32.89■■■□□ 2.86
SSU72-203ENST00000378725 WDR62O43379 1518 aa32.83■■■□□ 2.85
SSU72-203ENST00000378725 URB2Q14146 1524 aaKnown RBP32.79■■■□□ 2.84
SSU72-203ENST00000378725 ABCC8Q09428 1581 aa32.69■■■□□ 2.82
SSU72-203ENST00000378725 TOPBP1Q92547 1522 aa32.65■■■□□ 2.82
SSU72-203ENST00000378725 DNMBPQ6XZF7 1577 aa32.61■■■□□ 2.81
SSU72-203ENST00000378725 CUX1P39880 1505 aa32.51■■■□□ 2.79
SSU72-203ENST00000378725 WRNQ14191 1432 aaPredicted RBP eCLIP32.43■■■□□ 2.789e-6■■■■■ 50.1
SSU72-203ENST00000378725 POLA1P09884 1462 aaPredicted RBP32.39■■■□□ 2.78
SSU72-203ENST00000378725 IFT140Q96RY7 1462 aa32.37■■■□□ 2.77
SSU72-203ENST00000378725 FGD5Q6ZNL6 1462 aa32.34■■■□□ 2.77
SSU72-203ENST00000378725 SOGA1O94964 1423 aa32.3■■■□□ 2.76
SSU72-203ENST00000378725 TOP2BQ02880 1626 aa32.29■■■□□ 2.76
SSU72-203ENST00000378725 SYNJ1O43426 1573 aa32.29■■■□□ 2.76
SSU72-203ENST00000378725 BIVM-ERCC5R4GMW8 1640 aa32.27■■■□□ 2.76
SSU72-203ENST00000378725 RAD54L2Q9Y4B4 1467 aa32.25■■■□□ 2.75
SSU72-203ENST00000378725 TARBP1Q13395 1621 aaKnown RBP32.25■■■□□ 2.75
SSU72-203ENST00000378725 ZNF608Q9ULD9 1512 aaPredicted RBP32.2■■■□□ 2.74
SSU72-203ENST00000378725 ABCA10Q8WWZ4 1543 aa32.07■■■□□ 2.72
SSU72-203ENST00000378725 AQRO60306 1485 aaKnown RBP eCLIP32.07■■■□□ 2.728e-7■■□□□ 13.1
SSU72-203ENST00000378725 TDRD9Q8NDG6 1382 aaKnown RBP32.07■■■□□ 2.72
SSU72-203ENST00000378725 EIF4G3O43432 1585 aaKnown RBP32.02■■■□□ 2.72
SSU72-203ENST00000378725 WDR97A6NE52 1622 aa32.01■■■□□ 2.72
SSU72-203ENST00000378725 GAPVD1Q14C86 1478 aa31.9■■■□□ 2.7
SSU72-203ENST00000378725 TRIM41Q8WV44 630 aa31.89■■■□□ 2.7
SSU72-203ENST00000378725 ABCA5Q8WWZ7 1642 aa31.87■■■□□ 2.69
SSU72-203ENST00000378725 GRIN2BQ13224 1484 aa31.85■■■□□ 2.69
SSU72-203ENST00000378725 SNAPC4Q5SXM2 1469 aa31.74■■■□□ 2.67
SSU72-203ENST00000378725 CHIC1Q5VXU3 224 aa31.74■■■□□ 2.67
SSU72-203ENST00000378725 MAGI1Q96QZ7 1491 aaPredicted RBP31.73■■■□□ 2.67
SSU72-203ENST00000378725 KIF27Q86VH2 1401 aa31.73■■■□□ 2.67
SSU72-203ENST00000378725 PBRM1Q86U86 1689 aa31.71■■■□□ 2.67
SSU72-203ENST00000378725 ERICH3Q5RHP9 1530 aa31.68■■■□□ 2.66
SSU72-203ENST00000378725 OSCARQ8IYS5 282 aa31.64■■■□□ 2.66
SSU72-203ENST00000378725 IGF1RP08069 1367 aa31.63■■■□□ 2.65
SSU72-203ENST00000378725 SYNJ2O15056 1496 aa31.61■■■□□ 2.65
SSU72-203ENST00000378725 FBLN2P98095 1184 aa31.6■■■□□ 2.65
SSU72-203ENST00000378725 CHMP7Q8WUX9 453 aaPredicted RBP31.6■■■□□ 2.65
SSU72-203ENST00000378725 DNAJC5Q9H3Z4 198 aa31.6■■■□□ 2.65
SSU72-203ENST00000378725 FHAD1B1AJZ9 1412 aa31.56■■■□□ 2.64
SSU72-203ENST00000378725 RUSC2Q8N2Y8 1516 aa31.54■■■□□ 2.64
SSU72-203ENST00000378725 ADAMTS12P58397 1594 aa31.53■■■□□ 2.64
SSU72-203ENST00000378725 CHD1O14646 1710 aa31.52■■■□□ 2.64
SSU72-203ENST00000378725 GRIN2AQ12879 1464 aa31.43■■■□□ 2.62
SSU72-203ENST00000378725 CARMIL1Q5VZK9 1371 aa31.41■■■□□ 2.62
SSU72-203ENST00000378725 CUL7Q14999 1698 aa31.4■■■□□ 2.62
SSU72-203ENST00000378725 EEA1Q15075 1411 aa31.33■■■□□ 2.61
SSU72-203ENST00000378725 NUP160Q12769 1436 aa31.32■■■□□ 2.6
SSU72-203ENST00000378725 CSRNP3Q8WYN3 585 aa31.29■■■□□ 2.6
SSU72-203ENST00000378725 CLASP1Q7Z460 1538 aa31.27■■■□□ 2.6
SSU72-203ENST00000378725 CEP170Q5SW79 1584 aa31.24■■■□□ 2.59
SSU72-203ENST00000378725 RAPGEF2Q9Y4G8 1499 aa31.23■■■□□ 2.59
SSU72-203ENST00000378725 PRXQ9BXM0 1461 aa31.22■■■□□ 2.59
SSU72-203ENST00000378725 FAM9AQ8IZU1 332 aaPredicted RBP31.18■■■□□ 2.58
SSU72-203ENST00000378725 KIAA0586Q9BVV6 1533 aa31.09■■■□□ 2.57
SSU72-203ENST00000378725 ARHGEF11O15085 1522 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms