Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 GPAA1-213ENST00000530258 535 ntTSL 426.78■■□□□ 1.882e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.862e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-204ENST00000525087 937 ntTSL 526.3■■□□□ 1.82e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-217ENST00000532758 1079 ntTSL 326.3■■□□□ 1.82e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-214ENST00000530633 835 ntTSL 326.16■■□□□ 1.782e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-205ENST00000525308 903 ntTSL 224.52■■□□□ 1.522e-6■□□□□ 9.2
U2AF1Q01081 SEH1L-203ENST00000585730 582 ntTSL 223.86■■□□□ 1.412e-6■□□□□ 9.2
U2AF1Q01081 DPP7-206ENST00000473532 1144 ntTSL 523■■□□□ 1.272e-6■□□□□ 9.2
U2AF1Q01081 SEH1L-206ENST00000589446 655 ntTSL 522.92■■□□□ 1.262e-6■□□□□ 9.2
U2AF1Q01081 SEH1L-205ENST00000588251 789 ntTSL 322.66■■□□□ 1.222e-6■□□□□ 9.2
U2AF1Q01081 GPAA1-203ENST00000524418 825 ntTSL 321.57■■□□□ 1.042e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-206ENST00000446247 663 ntTSL 521.28■■□□□ 11e-7■□□□□ 9.2
U2AF1Q01081 DPP7-203ENST00000463619 775 ntTSL 319.34■□□□□ 0.692e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-204ENST00000419781 5414 ntTSL 1 (best)19.12■□□□□ 0.651e-7■□□□□ 9.2
U2AF1Q01081 GPAA1-208ENST00000527144 767 ntTSL 318.69■□□□□ 0.582e-6■□□□□ 9.2
U2AF1Q01081 SEH1L-204ENST00000587761 863 ntTSL 518.58■□□□□ 0.562e-6■□□□□ 9.2
U2AF1Q01081 DPP7-204ENST00000470766 478 ntTSL 217.99■□□□□ 0.472e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-203ENST00000417175 811 ntTSL 317.87■□□□□ 0.451e-7■□□□□ 9.2
U2AF1Q01081 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.372e-6■□□□□ 9.2
U2AF1Q01081 SLC38A1-206ENST00000549049 3196 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.142e-6■□□□□ 9.2
U2AF1Q01081 SLC38A1-202ENST00000439706 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.12e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-208ENST00000452839 2363 ntTSL 215.17■□□□□ 0.021e-7■□□□□ 9.2
U2AF1Q01081 SLC38A1-210ENST00000552197 2599 ntTSL 1 (best) BASIC14.67□□□□□ -0.062e-6■□□□□ 9.2
U2AF1Q01081 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.122e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC10.5□□□□□ -0.731e-7■□□□□ 9.2
U2AF1Q01081 NF1-215ENST00000493220 5691 ntTSL 28.18□□□□□ -1.12e-6■□□□□ 9.2
U2AF1Q01081 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.112e-6■□□□□ 9.2
U2AF1Q01081 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.132e-6■□□□□ 9.2
U2AF1Q01081 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.6□□□□□ -1.192e-6■□□□□ 9.2
U2AF1Q01081 NF1-205ENST00000456735 7787 ntTSL 57.57□□□□□ -1.22e-6■□□□□ 9.2
U2AF1Q01081 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.31□□□□□ -1.242e-6■□□□□ 9.2
U2AF1Q01081 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.244e-8■□□□□ 9.2
U2AF1Q01081 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.98□□□□□ -1.294e-8■□□□□ 9.2
U2AF1Q01081 TUSC3-202ENST00000503191 731 ntTSL 36.72□□□□□ -1.332e-6■□□□□ 9.2
U2AF1Q01081 NF1-219ENST00000579081 8788 ntTSL 1 (best)6.29□□□□□ -1.42e-6■□□□□ 9.2
U2AF1Q01081 NF1-216ENST00000495910 8223 ntTSL 26.11□□□□□ -1.432e-6■□□□□ 9.2
U2AF1Q01081 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.461e-7■□□□□ 9.2
U2AF1Q01081 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.6□□□□□ -1.514e-8■□□□□ 9.2
U2AF1Q01081 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.55□□□□□ -1.524e-8■□□□□ 9.2
U2AF1Q01081 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.245e-7■□□□□ 9.2
U2AF1Q01081 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC19.06■□□□□ 0.645e-7■□□□□ 9.2
U2AF1Q01081 P4HB-216ENST00000571617 505 ntTSL 328.06■■■□□ 2.082e-6■□□□□ 9.2
U2AF1Q01081 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.832e-6■□□□□ 9.2
U2AF1Q01081 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.78■■□□□ 1.722e-6■□□□□ 9.2
U2AF1Q01081 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.32■■□□□ 1.642e-6■□□□□ 9.2
U2AF1Q01081 P4HB-202ENST00000415593 1669 ntTSL 1 (best)22.56■■□□□ 1.22e-6■□□□□ 9.2
U2AF1Q01081 P4HB-208ENST00000473021 914 ntTSL 1 (best)21.19■□□□□ 0.982e-6■□□□□ 9.2
U2AF1Q01081 P4HB-220ENST00000575069 2453 ntTSL 219.9■□□□□ 0.782e-6■□□□□ 9.2
U2AF1Q01081 P4HB-210ENST00000476482 765 ntTSL 1 (best)16.91■□□□□ 0.32e-6■□□□□ 9.2
U2AF1Q01081 P4HB-215ENST00000571507 493 ntTSL 27.34□□□□□ -1.232e-6■□□□□ 9.2
U2AF1Q01081 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.083e-8■□□□□ 9.2
U2AF1Q01081 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC25.08■■□□□ 1.612e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.262e-6■□□□□ 9.2
U2AF1Q01081 NELFCD-208ENST00000482747 1701 ntTSL 222.8■■□□□ 1.243e-8■□□□□ 9.2
U2AF1Q01081 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)22.42■■□□□ 1.183e-8■□□□□ 9.2
U2AF1Q01081 TRAPPC12-210ENST00000441983 683 ntTSL 320.18■□□□□ 0.822e-6■□□□□ 9.2
U2AF1Q01081 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)19.09■□□□□ 0.653e-8■□□□□ 9.2
U2AF1Q01081 NELFCD-204ENST00000474543 2047 ntTSL 518.4■□□□□ 0.543e-8■□□□□ 9.2
U2AF1Q01081 NPIPA1-206ENST00000541836 2747 ntTSL 517.11■□□□□ 0.339e-7■□□□□ 9.2
U2AF1Q01081 TRAPPC12-206ENST00000417243 1047 ntTSL 516.72■□□□□ 0.272e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-218ENST00000479897 454 ntTSL 316.72■□□□□ 0.272e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-207ENST00000433382 578 ntTSL 516.6■□□□□ 0.252e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-219ENST00000479955 420 ntTSL 315.66■□□□□ 0.12e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-204ENST00000415624 815 ntAPPRIS ALT2 TSL 514.61□□□□□ -0.072e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-223ENST00000497597 3401 ntTSL 213.19□□□□□ -0.32e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-215ENST00000469147 1002 ntTSL 312.82□□□□□ -0.362e-6■□□□□ 9.2
U2AF1Q01081 TRAPPC12-214ENST00000462983 543 ntTSL 412.23□□□□□ -0.452e-6■□□□□ 9.2
U2AF1Q01081 PUM1-208ENST00000471894 812 ntTSL 314.04□□□□□ -0.162e-8■□□□□ 9.2
U2AF1Q01081 PUM1-210ENST00000490546 707 ntTSL 413.78□□□□□ -0.22e-8■□□□□ 9.2
U2AF1Q01081 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC28.32■■■□□ 2.126e-7■□□□□ 9.2
U2AF1Q01081 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.016e-7■□□□□ 9.2
U2AF1Q01081 TRIM28-207ENST00000597136 1552 ntTSL 220.03■□□□□ 0.86e-7■□□□□ 9.2
U2AF1Q01081 SARS-202ENST00000369923 1882 ntTSL 5 BASIC18.82■□□□□ 0.62e-6■□□□□ 9.1
U2AF1Q01081 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.512e-6■□□□□ 9.1
U2AF1Q01081 SARS-205ENST00000477544 694 ntTSL 213.88□□□□□ -0.192e-6■□□□□ 9.1
U2AF1Q01081 ACADVL-206ENST00000577191 1212 ntTSL 226.2■■□□□ 1.781e-11■□□□□ 9.1
U2AF1Q01081 ACADVL-225ENST00000581378 752 ntTSL 321.65■■□□□ 1.061e-11■□□□□ 9.1
U2AF1Q01081 BRD4-201ENST00000263377 7169 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.113e-7■□□□□ 9.1
U2AF1Q01081 ATP2A1-202ENST00000395503 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.022e-8■□□□□ 9.1
U2AF1Q01081 ATP2A1-201ENST00000357084 3532 ntTSL 2 BASIC14.32□□□□□ -0.122e-8■□□□□ 9.1
U2AF1Q01081 ATP2A1-205ENST00000563975 545 ntTSL 214.06□□□□□ -0.162e-8■□□□□ 9.1
U2AF1Q01081 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.283e-8■□□□□ 9.1
U2AF1Q01081 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.093e-8■□□□□ 9.1
U2AF1Q01081 RPL27-203ENST00000587478 584 ntTSL 228.72■■■□□ 2.192e-8■□□□□ 9.1
U2AF1Q01081 RPL27-208ENST00000593262 1872 ntTSL 224.32■■□□□ 1.482e-8■□□□□ 9.1
U2AF1Q01081 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.232e-8■□□□□ 9.1
U2AF1Q01081 RPL27-201ENST00000253788 490 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.332e-8■□□□□ 9.1
U2AF1Q01081 RPL27-204ENST00000588830 318 ntTSL 210.61□□□□□ -0.712e-8■□□□□ 9.1
U2AF1Q01081 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC10.55□□□□□ -0.722e-8■□□□□ 9.1
U2AF1Q01081 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.386e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-204ENST00000639040 2568 ntTSL 523.62■■□□□ 1.376e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC23.62■■□□□ 1.376e-11■□□□□ 9.1
U2AF1Q01081 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.276e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-201ENST00000638968 3175 ntTSL 520.73■□□□□ 0.916e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-208ENST00000640357 3488 ntTSL 516.9■□□□□ 0.36e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-206ENST00000639171 5352 ntTSL 514.7□□□□□ -0.066e-11■□□□□ 9.1
U2AF1Q01081 SLC38A2-203ENST00000547252 847 ntTSL 311.49□□□□□ -0.576e-11■□□□□ 9.1
U2AF1Q01081 AC118553.2-207ENST00000640238 2901 ntTSL 58.59□□□□□ -1.036e-11■□□□□ 9.1
U2AF1Q01081 MDM2-212ENST00000393416 754 ntTSL 59.78□□□□□ -0.844e-9■□□□□ 9.1
U2AF1Q01081 MDM2-225ENST00000539479 845 ntTSL 1 (best)8.34□□□□□ -1.074e-9■□□□□ 9.1
Retrieved 100 of 10,096 protein–RNA pairs in 30.7 ms