RNA–Protein interactions for RNA: ENST00000593262.1

RPL27-208, Transcript of ribosomal protein L27, human

TSL 2

Gene RPL27, Length 1,872 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPL27-208	ENST00000593262	NISCH	Q9Y2I1	1504 aa		38.68	■■■■□ 3.78
RPL27-208	ENST00000593262	SHROOM4	Q9ULL8	1493 aa		33	■■■□□ 2.87
RPL27-208	ENST00000593262	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.86	■■■□□ 2.85
RPL27-208	ENST00000593262	CCDC180	Q9P1Z9	1646 aa		32.86	■■■□□ 2.85
RPL27-208	ENST00000593262	SUPT5H	O00267	1087 aa	Known RBP	32.61	■■■□□ 2.81
RPL27-208	ENST00000593262	CHIC1	Q5VXU3	224 aa		32.09	■■■□□ 2.73
RPL27-208	ENST00000593262	MYO15B	Q96JP2	1530 aa		32.08	■■■□□ 2.73
RPL27-208	ENST00000593262	HRC	P23327	699 aa		32.04	■■■□□ 2.72
RPL27-208	ENST00000593262	DCAF1	Q9Y4B6	1507 aa		31.92	■■■□□ 2.7
RPL27-208	ENST00000593262	DCAF8L2	P0C7V8	631 aa		31.53	■■■□□ 2.64
RPL27-208	ENST00000593262	PCGF6	Q9BYE7	350 aa		31.5	■■■□□ 2.63
RPL27-208	ENST00000593262	ABCC9	O60706	1549 aa		31.16	■■■□□ 2.58
RPL27-208	ENST00000593262	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.01	■■■□□ 2.55
RPL27-208	ENST00000593262	TRIM26	Q12899	539 aa	Predicted RBP	30.99	■■■□□ 2.55
RPL27-208	ENST00000593262	LOC105371045	A0A1W2PR82	267 aa		30.98	■■■□□ 2.55
RPL27-208	ENST00000593262	RSF1	Q96T23	1441 aa	Predicted RBP	30.72	■■■□□ 2.51
RPL27-208	ENST00000593262	ZEB1	P37275	1124 aa	Predicted RBP	30.71	■■■□□ 2.51
RPL27-208	ENST00000593262	RB1CC1	Q8TDY2	1594 aa		30.62	■■■□□ 2.49
RPL27-208	ENST00000593262	SCRIB	Q14160	1630 aa		30.61	■■■□□ 2.49
RPL27-208	ENST00000593262	TRIM41	Q8WV44	630 aa		30.48	■■■□□ 2.47
RPL27-208	ENST00000593262	NACAD	O15069	1562 aa		30.19	■■■□□ 2.42
RPL27-208	ENST00000593262	PELP1	Q8IZL8	1130 aa	Known RBP	30.12	■■■□□ 2.41
RPL27-208	ENST00000593262	FAM9A	Q8IZU1	332 aa	Predicted RBP	30.06	■■■□□ 2.4
RPL27-208	ENST00000593262	MROH2B	Q7Z745	1585 aa		30.01	■■■□□ 2.39
RPL27-208	ENST00000593262	CECR2	Q9BXF3	1484 aa		29.98	■■■□□ 2.39
RPL27-208	ENST00000593262	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.92	■■■□□ 2.38
RPL27-208	ENST00000593262	WIZ	O95785	1651 aa		29.89	■■■□□ 2.38
RPL27-208	ENST00000593262	EIF4G1	Q04637	1599 aa	Known RBP	29.85	■■■□□ 2.37
RPL27-208	ENST00000593262	SCAF1	Q9H7N4	1312 aa	Known RBP	29.72	■■■□□ 2.35
RPL27-208	ENST00000593262	EHMT2	Q96KQ7	1210 aa		29.63	■■■□□ 2.33
RPL27-208	ENST00000593262	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.59	■■■□□ 2.33	5e-10	■■□□□ 13.4
RPL27-208	ENST00000593262	TOP2A	P11388	1531 aa	Known RBP	29.57	■■■□□ 2.32
RPL27-208	ENST00000593262	CCER1	Q8TC90	406 aa	Predicted RBP	29.53	■■■□□ 2.32
RPL27-208	ENST00000593262	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	29.44	■■■□□ 2.3
RPL27-208	ENST00000593262	ACIN1	Q9UKV3	1341 aa	Known RBP	29.4	■■■□□ 2.3
RPL27-208	ENST00000593262	SMARCA4	P51532	1647 aa		29.39	■■■□□ 2.3
RPL27-208	ENST00000593262	EEA1	Q15075	1411 aa		29.39	■■■□□ 2.29
RPL27-208	ENST00000593262	SMARCA2	P51531	1590 aa		29.36	■■■□□ 2.29
RPL27-208	ENST00000593262	CEP162	Q5TB80	1403 aa		29.36	■■■□□ 2.29
RPL27-208	ENST00000593262	TNIK	Q9UKE5	1360 aa		29.34	■■■□□ 2.29
RPL27-208	ENST00000593262	ABCC8	Q09428	1581 aa		29.33	■■■□□ 2.29
RPL27-208	ENST00000593262	CCDC88B	A6NC98	1476 aa		29.32	■■■□□ 2.28
RPL27-208	ENST00000593262	CENPB	P07199	599 aa	Predicted RBP	29.27	■■■□□ 2.28
RPL27-208	ENST00000593262	DIEXF	Q68CQ4	756 aa	Known RBP	29.25	■■■□□ 2.27
RPL27-208	ENST00000593262	NEUROD1	Q13562	356 aa		29.17	■■■□□ 2.26
RPL27-208	ENST00000593262	SOGA1	O94964	1423 aa		29.13	■■■□□ 2.25
RPL27-208	ENST00000593262	GOLGA3	Q08378	1498 aa		29.11	■■■□□ 2.25
RPL27-208	ENST00000593262	CSRNP3	Q8WYN3	585 aa		29.08	■■■□□ 2.25
RPL27-208	ENST00000593262	UNC13A	Q9UPW8	1703 aa		29.08	■■■□□ 2.25
RPL27-208	ENST00000593262	ZNF316	A6NFI3	1004 aa	Predicted RBP	28.96	■■■□□ 2.23
RPL27-208	ENST00000593262	GTF3C3	Q9Y5Q9	886 aa		28.96	■■■□□ 2.23
RPL27-208	ENST00000593262	KIF21B	O75037	1637 aa		28.94	■■■□□ 2.22
RPL27-208	ENST00000593262	UBTF	P17480	764 aa	Known RBP	28.93	■■■□□ 2.22
RPL27-208	ENST00000593262	RUSC2	Q8N2Y8	1516 aa		28.93	■■■□□ 2.22
RPL27-208	ENST00000593262	CEP164	Q9UPV0	1460 aa		28.9	■■■□□ 2.22
RPL27-208	ENST00000593262	PEG3	Q9GZU2	1588 aa		28.88	■■■□□ 2.21
RPL27-208	ENST00000593262	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.88	■■■□□ 2.21
RPL27-208	ENST00000593262	MYT1	Q01538	1121 aa		28.86	■■■□□ 2.21
RPL27-208	ENST00000593262	BAZ1B	Q9UIG0	1483 aa	Known RBP	28.77	■■■□□ 2.2
RPL27-208	ENST00000593262	SYNJ1	O43426	1573 aa		28.72	■■■□□ 2.19
RPL27-208	ENST00000593262	CLIP1	P30622	1438 aa		28.71	■■■□□ 2.19
RPL27-208	ENST00000593262	VPS8	Q8N3P4	1428 aa		28.71	■■■□□ 2.19
RPL27-208	ENST00000593262	BICRA	Q9NZM4	1560 aa		28.64	■■■□□ 2.17
RPL27-208	ENST00000593262	APLP2	Q06481	763 aa		28.53	■■■□□ 2.16
RPL27-208	ENST00000593262	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.52	■■■□□ 2.16
RPL27-208	ENST00000593262	CLSPN	Q9HAW4	1339 aa		28.48	■■■□□ 2.15
RPL27-208	ENST00000593262	MIER1	Q8N108	512 aa		28.46	■■■□□ 2.15
RPL27-208	ENST00000593262	RAPGEF2	Q9Y4G8	1499 aa		28.45	■■■□□ 2.14
RPL27-208	ENST00000593262	ATAD2B	Q9ULI0	1458 aa		28.44	■■■□□ 2.14
RPL27-208	ENST00000593262	YTHDC1	Q96MU7	727 aa	Known RBP	28.42	■■■□□ 2.14
RPL27-208	ENST00000593262	TOP2B	Q02880	1626 aa		28.42	■■■□□ 2.14
RPL27-208	ENST00000593262	ERICH3	Q5RHP9	1530 aa		28.39	■■■□□ 2.14
RPL27-208	ENST00000593262	BIVM-ERCC5	R4GMW8	1640 aa		28.36	■■■□□ 2.13
RPL27-208	ENST00000593262	PABPN1	Q86U42	306 aa	Known RBP eCLIP	28.32	■■■□□ 2.12
RPL27-208	ENST00000593262	DNAJC5B	Q9UF47	199 aa		28.3	■■■□□ 2.12
RPL27-208	ENST00000593262	PRX	Q9BXM0	1461 aa		28.23	■■■□□ 2.11
RPL27-208	ENST00000593262	DHX57	Q6P158	1386 aa	Known RBP	28.22	■■■□□ 2.11
RPL27-208	ENST00000593262	ARAP1	Q96P48	1450 aa		28.2	■■■□□ 2.11
RPL27-208	ENST00000593262	RRBP1	Q9P2E9	1410 aa	Known RBP	28.13	■■■□□ 2.09
RPL27-208	ENST00000593262	CUX2	O14529	1486 aa		28.13	■■■□□ 2.09
RPL27-208	ENST00000593262	RANGAP1	P46060	587 aa	Predicted RBP	28	■■■□□ 2.07
RPL27-208	ENST00000593262	HMGXB3	Q12766	1538 aa		27.98	■■■□□ 2.07
RPL27-208	ENST00000593262	KIF27	Q86VH2	1401 aa		27.98	■■■□□ 2.07
RPL27-208	ENST00000593262	CUX1	P39880	1505 aa		27.94	■■■□□ 2.06
RPL27-208	ENST00000593262	KANK4	Q5T7N3	995 aa	Predicted RBP	27.92	■■■□□ 2.06
RPL27-208	ENST00000593262	CCNB3	Q8WWL7	1395 aa		27.91	■■■□□ 2.06
RPL27-208	ENST00000593262	ARHGAP35	Q9NRY4	1499 aa		27.86	■■■□□ 2.05
RPL27-208	ENST00000593262	MAP3K1	Q13233	1512 aa		27.85	■■■□□ 2.05
RPL27-208	ENST00000593262	NCAPD3	P42695	1498 aa		27.85	■■■□□ 2.05
RPL27-208	ENST00000593262	SUPT16H	Q9Y5B9	1047 aa	Known RBP	27.85	■■■□□ 2.05
RPL27-208	ENST00000593262	PRDM2	Q13029	1718 aa		27.76	■■■□□ 2.03
RPL27-208	ENST00000593262	CFTR	P13569	1480 aa		27.75	■■■□□ 2.03
RPL27-208	ENST00000593262	TIAM1	Q13009	1591 aa		27.74	■■■□□ 2.03
RPL27-208	ENST00000593262	MAPKBP1	O60336	1514 aa		27.7	■■■□□ 2.02
RPL27-208	ENST00000593262	RAB3GAP2	Q9H2M9	1393 aa		27.68	■■■□□ 2.02
RPL27-208	ENST00000593262	SETD5	Q9C0A6	1442 aa		27.62	■■■□□ 2.01
RPL27-208	ENST00000593262	CFAP43	Q8NDM7	1665 aa		27.58	■■■□□ 2.01
RPL27-208	ENST00000593262	LRRC9	Q6ZRR7	1453 aa		27.58	■■■□□ 2.01
RPL27-208	ENST00000593262	TIMELESS	Q9UNS1	1208 aa		27.54	■■■□□ 2
RPL27-208	ENST00000593262	FHAD1	B1AJZ9	1412 aa		27.53	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms