RNA–Protein interactions for RNA: ENST00000460601.5

NELFCD-201, Transcript of negative elongation factor complex member C/D, humanhuman

TSL 1 (best)

Gene NELFCD, Length 2,137 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFCD-201ENST00000460601 NISCHQ9Y2I1 1504 aa38.69■■■■□ 3.78
NELFCD-201ENST00000460601 CCDC180Q9P1Z9 1646 aa33.75■■■□□ 2.99
NELFCD-201ENST00000460601 ZCCHC6Q5VYS8 1495 aaKnown RBP32.46■■■□□ 2.79
NELFCD-201ENST00000460601 ABCC9O60706 1549 aa32.32■■■□□ 2.76
NELFCD-201ENST00000460601 DCAF8L2P0C7V8 631 aa32.2■■■□□ 2.74
NELFCD-201ENST00000460601 DCAF1Q9Y4B6 1507 aa31.87■■■□□ 2.69
NELFCD-201ENST00000460601 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
NELFCD-201ENST00000460601 MYO15BQ96JP2 1530 aa31.56■■■□□ 2.64
NELFCD-201ENST00000460601 NACADO15069 1562 aa31.5■■■□□ 2.63
NELFCD-201ENST00000460601 RB1CC1Q8TDY2 1594 aa31.31■■■□□ 2.6
NELFCD-201ENST00000460601 SCRIBQ14160 1630 aa31.18■■■□□ 2.58
NELFCD-201ENST00000460601 UNC13AQ9UPW8 1703 aa30.77■■■□□ 2.52
NELFCD-201ENST00000460601 PABPN1Q86U42 306 aaKnown RBP eCLIP30.49■■■□□ 2.478e-7■■□□□ 12.1
NELFCD-201ENST00000460601 BICRAQ9NZM4 1560 aa30.46■■■□□ 2.47
NELFCD-201ENST00000460601 SUPT5HO00267 1087 aaKnown RBP30.26■■■□□ 2.43
NELFCD-201ENST00000460601 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
NELFCD-201ENST00000460601 RSF1Q96T23 1441 aaPredicted RBP29.97■■■□□ 2.39
NELFCD-201ENST00000460601 MROH2BQ7Z745 1585 aa29.95■■■□□ 2.39
NELFCD-201ENST00000460601 BAZ1AQ9NRL2 1556 aaPredicted RBP29.86■■■□□ 2.37
NELFCD-201ENST00000460601 SMARCA4P51532 1647 aa29.8■■■□□ 2.36
NELFCD-201ENST00000460601 WIZO95785 1651 aa29.71■■■□□ 2.35
NELFCD-201ENST00000460601 EIF4G1Q04637 1599 aaKnown RBP29.55■■■□□ 2.32
NELFCD-201ENST00000460601 PEG3Q9GZU2 1588 aa29.39■■■□□ 2.29
NELFCD-201ENST00000460601 ATAD2BQ9ULI0 1458 aa29.38■■■□□ 2.29
NELFCD-201ENST00000460601 TOP2AP11388 1531 aaKnown RBP29.3■■■□□ 2.28
NELFCD-201ENST00000460601 SMARCA2P51531 1590 aa29.28■■■□□ 2.28
NELFCD-201ENST00000460601 BAZ1BQ9UIG0 1483 aaKnown RBP29.19■■■□□ 2.26
NELFCD-201ENST00000460601 CC2D2AQ9P2K1 1620 aa29.19■■■□□ 2.26
NELFCD-201ENST00000460601 NCAPD3P42695 1498 aa29.11■■■□□ 2.25
NELFCD-201ENST00000460601 CCDC88BA6NC98 1476 aa29.05■■■□□ 2.24
NELFCD-201ENST00000460601 HMGXB3Q12766 1538 aa29.03■■■□□ 2.24
NELFCD-201ENST00000460601 DNAJC5BQ9UF47 199 aa28.78■■■□□ 2.2
NELFCD-201ENST00000460601 CHIC1Q5VXU3 224 aa28.76■■■□□ 2.2
NELFCD-201ENST00000460601 ABCC8Q09428 1581 aa28.45■■■□□ 2.15
NELFCD-201ENST00000460601 CFTRP13569 1480 aa28.44■■■□□ 2.14
NELFCD-201ENST00000460601 CADPSQ9ULU8 1353 aa28.38■■■□□ 2.13
NELFCD-201ENST00000460601 TRIM41Q8WV44 630 aa28.37■■■□□ 2.13
NELFCD-201ENST00000460601 NESP48681 1621 aa28.33■■■□□ 2.13
NELFCD-201ENST00000460601 PRDM2Q13029 1718 aa28.21■■■□□ 2.11
NELFCD-201ENST00000460601 WRNQ14191 1432 aaPredicted RBP eCLIP28.2■■■□□ 2.1
NELFCD-201ENST00000460601 LAMC3Q9Y6N6 1575 aa28.15■■■□□ 2.1
NELFCD-201ENST00000460601 SYNJ1O43426 1573 aa28.14■■■□□ 2.1
NELFCD-201ENST00000460601 FANCD2Q9BXW9 1451 aa28.09■■■□□ 2.09
NELFCD-201ENST00000460601 CUX1P39880 1505 aa28.01■■■□□ 2.07
NELFCD-201ENST00000460601 TOP2BQ02880 1626 aa27.97■■■□□ 2.07
NELFCD-201ENST00000460601 FAM9AQ8IZU1 332 aaPredicted RBP27.97■■■□□ 2.07
NELFCD-201ENST00000460601 PDS5BQ9NTI5 1447 aa27.94■■■□□ 2.06
NELFCD-201ENST00000460601 BIVM-ERCC5R4GMW8 1640 aa27.93■■■□□ 2.06
NELFCD-201ENST00000460601 KIF21AQ7Z4S6 1674 aa27.92■■■□□ 2.06
NELFCD-201ENST00000460601 CEP164Q9UPV0 1460 aa27.92■■■□□ 2.06
NELFCD-201ENST00000460601 SOGA1O94964 1423 aa27.86■■■□□ 2.05
NELFCD-201ENST00000460601 RUSC2Q8N2Y8 1516 aa27.8■■■□□ 2.04
NELFCD-201ENST00000460601 URB2Q14146 1524 aaKnown RBP27.79■■■□□ 2.04
NELFCD-201ENST00000460601 TOPBP1Q92547 1522 aa27.76■■■□□ 2.03
NELFCD-201ENST00000460601 LOC105371045A0A1W2PR82 267 aa27.76■■■□□ 2.03
NELFCD-201ENST00000460601 DNMBPQ6XZF7 1577 aa27.75■■■□□ 2.03
NELFCD-201ENST00000460601 FGD5Q6ZNL6 1462 aa27.73■■■□□ 2.03
NELFCD-201ENST00000460601 EHMT2Q96KQ7 1210 aa27.7■■■□□ 2.02
NELFCD-201ENST00000460601 ERCC6Q03468 1493 aa27.68■■■□□ 2.02
NELFCD-201ENST00000460601 POLA1P09884 1462 aaPredicted RBP27.64■■■□□ 2.02
NELFCD-201ENST00000460601 MRC2Q9UBG0 1479 aa27.62■■■□□ 2.01
NELFCD-201ENST00000460601 RAD54L2Q9Y4B4 1467 aa27.59■■■□□ 2.01
NELFCD-201ENST00000460601 EEA1Q15075 1411 aa27.55■■■□□ 2
NELFCD-201ENST00000460601 CSRNP3Q8WYN3 585 aa27.53■■■□□ 2
NELFCD-201ENST00000460601 CUX2O14529 1486 aa27.51■■□□□ 1.99
NELFCD-201ENST00000460601 THOC2Q8NI27 1593 aaKnown RBP27.49■■□□□ 1.99
NELFCD-201ENST00000460601 WDR62O43379 1518 aa27.49■■□□□ 1.99
NELFCD-201ENST00000460601 KIF27Q86VH2 1401 aa27.47■■□□□ 1.99
NELFCD-201ENST00000460601 ABCA10Q8WWZ4 1543 aa27.42■■□□□ 1.98
NELFCD-201ENST00000460601 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
NELFCD-201ENST00000460601 TARBP1Q13395 1621 aaKnown RBP27.36■■□□□ 1.97
NELFCD-201ENST00000460601 TDRD9Q8NDG6 1382 aaKnown RBP27.35■■□□□ 1.97
NELFCD-201ENST00000460601 IGF1RP08069 1367 aa27.3■■□□□ 1.96
NELFCD-201ENST00000460601 RAPGEF2Q9Y4G8 1499 aa27.28■■□□□ 1.96
NELFCD-201ENST00000460601 KIF21BO75037 1637 aa27.27■■□□□ 1.96
NELFCD-201ENST00000460601 GOLGA3Q08378 1498 aa27.25■■□□□ 1.95
NELFCD-201ENST00000460601 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
NELFCD-201ENST00000460601 ABCA5Q8WWZ7 1642 aa27.24■■□□□ 1.95
NELFCD-201ENST00000460601 ZNF608Q9ULD9 1512 aaPredicted RBP27.22■■□□□ 1.95
NELFCD-201ENST00000460601 IFT140Q96RY7 1462 aa27.22■■□□□ 1.95
NELFCD-201ENST00000460601 UBTFP17480 764 aaKnown RBP27.22■■□□□ 1.95
NELFCD-201ENST00000460601 AQRO60306 1485 aaKnown RBP eCLIP27.21■■□□□ 1.952e-7■■■■□ 23.4
NELFCD-201ENST00000460601 GAPVD1Q14C86 1478 aa27.21■■□□□ 1.95
NELFCD-201ENST00000460601 CARMIL1Q5VZK9 1371 aa27.14■■□□□ 1.94
NELFCD-201ENST00000460601 ERICH3Q5RHP9 1530 aa27.12■■□□□ 1.93
NELFCD-201ENST00000460601 TNIKQ9UKE5 1360 aa27.11■■□□□ 1.93
NELFCD-201ENST00000460601 EIF4G3O43432 1585 aaKnown RBP27.07■■□□□ 1.92
NELFCD-201ENST00000460601 PBRM1Q86U86 1689 aa27.07■■□□□ 1.92
NELFCD-201ENST00000460601 CUL7Q14999 1698 aa27.02■■□□□ 1.92
NELFCD-201ENST00000460601 CEP162Q5TB80 1403 aa27.02■■□□□ 1.92
NELFCD-201ENST00000460601 RANGAP1P46060 587 aaPredicted RBP27■■□□□ 1.91
NELFCD-201ENST00000460601 GRIN2BQ13224 1484 aa27■■□□□ 1.91
NELFCD-201ENST00000460601 SNAPC4Q5SXM2 1469 aa26.91■■□□□ 1.9
NELFCD-201ENST00000460601 ADAMTS12P58397 1594 aa26.9■■□□□ 1.9
NELFCD-201ENST00000460601 FHAD1B1AJZ9 1412 aa26.87■■□□□ 1.89
NELFCD-201ENST00000460601 CLIP1P30622 1438 aa26.84■■□□□ 1.89
NELFCD-201ENST00000460601 MAGI1Q96QZ7 1491 aaPredicted RBP26.77■■□□□ 1.88
NELFCD-201ENST00000460601 FBLN2P98095 1184 aa26.74■■□□□ 1.87
NELFCD-201ENST00000460601 CTTNBP2Q8WZ74 1663 aa26.73■■□□□ 1.87
NELFCD-201ENST00000460601 SYNJ2O15056 1496 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms