RNA–Protein interactions for RNA: ENST00000546893.5

SLC38A1-204, Transcript of solute carrier family 38 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC38A1, Length 2,332 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC38A1-204ENST00000546893 NISCHQ9Y2I1 1504 aa28.16■■■□□ 2.1
SLC38A1-204ENST00000546893 CCDC180Q9P1Z9 1646 aa24.14■■□□□ 1.46
SLC38A1-204ENST00000546893 ZCCHC6Q5VYS8 1495 aaKnown RBP23.88■■□□□ 1.41
SLC38A1-204ENST00000546893 SHROOM4Q9ULL8 1493 aa23.52■■□□□ 1.36
SLC38A1-204ENST00000546893 DCAF1Q9Y4B6 1507 aa23.4■■□□□ 1.34
SLC38A1-204ENST00000546893 SUPT5HO00267 1087 aaKnown RBP23.19■■□□□ 1.3
SLC38A1-204ENST00000546893 PELP1Q8IZL8 1130 aaKnown RBP22.99■■□□□ 1.27
SLC38A1-204ENST00000546893 DCAF8L2P0C7V8 631 aa22.79■■□□□ 1.24
SLC38A1-204ENST00000546893 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
SLC38A1-204ENST00000546893 MYO15BQ96JP2 1530 aa22.76■■□□□ 1.23
SLC38A1-204ENST00000546893 HRCP23327 699 aa22.7■■□□□ 1.22
SLC38A1-204ENST00000546893 ABCC9O60706 1549 aa22.57■■□□□ 1.2
SLC38A1-204ENST00000546893 MYT1Q01538 1121 aa22.31■■□□□ 1.16
SLC38A1-204ENST00000546893 NACADO15069 1562 aa22.25■■□□□ 1.15
SLC38A1-204ENST00000546893 SCRIBQ14160 1630 aa22.22■■□□□ 1.15
SLC38A1-204ENST00000546893 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
SLC38A1-204ENST00000546893 PPARGC1BQ86YN6 1023 aaKnown RBP22.19■■□□□ 1.14
SLC38A1-204ENST00000546893 RB1CC1Q8TDY2 1594 aa22.14■■□□□ 1.14
SLC38A1-204ENST00000546893 PCGF6Q9BYE7 350 aa22.01■■□□□ 1.11
SLC38A1-204ENST00000546893 SCAF1Q9H7N4 1312 aaKnown RBP21.93■■□□□ 1.1
SLC38A1-204ENST00000546893 TRIM26Q12899 539 aaPredicted RBP21.88■■□□□ 1.09
SLC38A1-204ENST00000546893 LOC105371045A0A1W2PR82 267 aa21.86■■□□□ 1.09
SLC38A1-204ENST00000546893 TRIM41Q8WV44 630 aa21.82■■□□□ 1.08
SLC38A1-204ENST00000546893 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
SLC38A1-204ENST00000546893 BAZ1AQ9NRL2 1556 aaPredicted RBP21.71■■□□□ 1.07
SLC38A1-204ENST00000546893 CECR2Q9BXF3 1484 aa21.7■■□□□ 1.06
SLC38A1-204ENST00000546893 ZEB1P37275 1124 aaPredicted RBP21.68■■□□□ 1.06
SLC38A1-204ENST00000546893 WIZO95785 1651 aa21.59■■□□□ 1.05
SLC38A1-204ENST00000546893 EIF4G1Q04637 1599 aaKnown RBP21.53■■□□□ 1.04
SLC38A1-204ENST00000546893 UNC13AQ9UPW8 1703 aa21.52■■□□□ 1.04
SLC38A1-204ENST00000546893 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
SLC38A1-204ENST00000546893 SMARCA4P51532 1647 aa21.42■■□□□ 1.02
SLC38A1-204ENST00000546893 BICRAQ9NZM4 1560 aa21.33■■□□□ 1
SLC38A1-204ENST00000546893 PABPN1Q86U42 306 aaKnown RBP eCLIP21.31■■□□□ 1
SLC38A1-204ENST00000546893 FAM9AQ8IZU1 332 aaPredicted RBP21.31■■□□□ 1
SLC38A1-204ENST00000546893 SMARCA2P51531 1590 aa21.28■■□□□ 1
SLC38A1-204ENST00000546893 EEA1Q15075 1411 aa21.28■■□□□ 1
SLC38A1-204ENST00000546893 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
SLC38A1-204ENST00000546893 WRNQ14191 1432 aaPredicted RBP eCLIP21.2■□□□□ 0.98
SLC38A1-204ENST00000546893 TTBK1Q5TCY1 1321 aaPredicted RBP21.19■□□□□ 0.98
SLC38A1-204ENST00000546893 PEG3Q9GZU2 1588 aa21.18■□□□□ 0.98
SLC38A1-204ENST00000546893 ACIN1Q9UKV3 1341 aaKnown RBP21.11■□□□□ 0.97
SLC38A1-204ENST00000546893 TNIKQ9UKE5 1360 aa21.08■□□□□ 0.97
SLC38A1-204ENST00000546893 ABCC8Q09428 1581 aa21.05■□□□□ 0.96
SLC38A1-204ENST00000546893 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
SLC38A1-204ENST00000546893 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
SLC38A1-204ENST00000546893 GTF3C3Q9Y5Q9 886 aa20.95■□□□□ 0.94
SLC38A1-204ENST00000546893 GOLGA3Q08378 1498 aa20.94■□□□□ 0.94
SLC38A1-204ENST00000546893 CSRNP3Q8WYN3 585 aa20.93■□□□□ 0.94
SLC38A1-204ENST00000546893 SOGA1O94964 1423 aa20.89■□□□□ 0.94
SLC38A1-204ENST00000546893 EHMT2Q96KQ7 1210 aa20.88■□□□□ 0.93
SLC38A1-204ENST00000546893 KIF21BO75037 1637 aa20.86■□□□□ 0.93
SLC38A1-204ENST00000546893 BCL11AQ9H165 835 aa20.85■□□□□ 0.93
SLC38A1-204ENST00000546893 CEP164Q9UPV0 1460 aa20.84■□□□□ 0.93
SLC38A1-204ENST00000546893 ATAD2BQ9ULI0 1458 aa20.82■□□□□ 0.92
SLC38A1-204ENST00000546893 CCER1Q8TC90 406 aaPredicted RBP20.79■□□□□ 0.92
SLC38A1-204ENST00000546893 BAZ1BQ9UIG0 1483 aaKnown RBP20.79■□□□□ 0.92
SLC38A1-204ENST00000546893 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
SLC38A1-204ENST00000546893 UBTFP17480 764 aaKnown RBP20.72■□□□□ 0.91
SLC38A1-204ENST00000546893 RUSC2Q8N2Y8 1516 aa20.7■□□□□ 0.9
SLC38A1-204ENST00000546893 CENPBP07199 599 aaPredicted RBP20.69■□□□□ 0.9
SLC38A1-204ENST00000546893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.66■□□□□ 0.9
SLC38A1-204ENST00000546893 PRKCSHP14314 528 aaPredicted RBP20.65■□□□□ 0.9
SLC38A1-204ENST00000546893 TOP2BQ02880 1626 aa20.63■□□□□ 0.89
SLC38A1-204ENST00000546893 CLIP1P30622 1438 aa20.6■□□□□ 0.89
SLC38A1-204ENST00000546893 VPS8Q8N3P4 1428 aa20.6■□□□□ 0.89
SLC38A1-204ENST00000546893 BIVM-ERCC5R4GMW8 1640 aa20.6■□□□□ 0.89
SLC38A1-204ENST00000546893 HMGXB3Q12766 1538 aa20.59■□□□□ 0.89
SLC38A1-204ENST00000546893 ERICH3Q5RHP9 1530 aa20.56■□□□□ 0.88
SLC38A1-204ENST00000546893 NCAPD3P42695 1498 aa20.51■□□□□ 0.87
SLC38A1-204ENST00000546893 APLP2Q06481 763 aa20.46■□□□□ 0.87
SLC38A1-204ENST00000546893 DIEXFQ68CQ4 756 aaKnown RBP20.46■□□□□ 0.87
SLC38A1-204ENST00000546893 RAPGEF2Q9Y4G8 1499 aa20.44■□□□□ 0.86
SLC38A1-204ENST00000546893 PRXQ9BXM0 1461 aa20.42■□□□□ 0.86
SLC38A1-204ENST00000546893 CC2D2AQ9P2K1 1620 aa20.39■□□□□ 0.86
SLC38A1-204ENST00000546893 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
SLC38A1-204ENST00000546893 CLSPNQ9HAW4 1339 aa20.37■□□□□ 0.85
SLC38A1-204ENST00000546893 ANP32EQ9BTT0 268 aa20.33■□□□□ 0.84
SLC38A1-204ENST00000546893 KIF27Q86VH2 1401 aa20.33■□□□□ 0.84
SLC38A1-204ENST00000546893 CFTRP13569 1480 aa20.32■□□□□ 0.84
SLC38A1-204ENST00000546893 PRDM2Q13029 1718 aa20.29■□□□□ 0.84
SLC38A1-204ENST00000546893 CUX1P39880 1505 aa20.27■□□□□ 0.84
SLC38A1-204ENST00000546893 ARAP1Q96P48 1450 aa20.23■□□□□ 0.83
SLC38A1-204ENST00000546893 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
SLC38A1-204ENST00000546893 RRBP1Q9P2E9 1410 aaKnown RBP20.17■□□□□ 0.82
SLC38A1-204ENST00000546893 MAP3K1Q13233 1512 aa20.15■□□□□ 0.82
SLC38A1-204ENST00000546893 CUX2O14529 1486 aa20.14■□□□□ 0.81
SLC38A1-204ENST00000546893 ARHGAP35Q9NRY4 1499 aa20.05■□□□□ 0.8
SLC38A1-204ENST00000546893 ERICH6Q7L0X2 663 aa20.05■□□□□ 0.8
SLC38A1-204ENST00000546893 DHX57Q6P158 1386 aaKnown RBP20.04■□□□□ 0.8
SLC38A1-204ENST00000546893 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
SLC38A1-204ENST00000546893 YTHDC1Q96MU7 727 aaKnown RBP20.01■□□□□ 0.79
SLC38A1-204ENST00000546893 CCNB3Q8WWL7 1395 aa19.99■□□□□ 0.79
SLC38A1-204ENST00000546893 DNAJC5BQ9UF47 199 aa19.98■□□□□ 0.79
SLC38A1-204ENST00000546893 IGF1RP08069 1367 aa19.98■□□□□ 0.79
SLC38A1-204ENST00000546893 FHAD1B1AJZ9 1412 aa19.95■□□□□ 0.78
SLC38A1-204ENST00000546893 TIAM1Q13009 1591 aa19.94■□□□□ 0.78
SLC38A1-204ENST00000546893 KANK4Q5T7N3 995 aaPredicted RBP19.93■□□□□ 0.78
SLC38A1-204ENST00000546893 TSHZ2Q9NRE2 1034 aa19.93■□□□□ 0.78
SLC38A1-204ENST00000546893 RANGAP1P46060 587 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms