Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ERMAP-201ENST00000328249 3949 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.996e-7■■■■□ 21.4
UPF1Q92900 ERMAP-205ENST00000487556 2988 ntTSL 58.73□□□□□ -1.016e-7■■■■□ 21.4
UPF1Q92900 ERMAP-203ENST00000372517 3423 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.046e-7■■■■□ 21.4
UPF1Q92900 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.15■□□□□ 0.661e-11■■■■□ 21.4
UPF1Q92900 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.311e-11■■■■□ 21.4
UPF1Q92900 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.83■□□□□ 0.281e-11■■■■□ 21.4
UPF1Q92900 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.11e-11■■■■□ 21.4
UPF1Q92900 TNIP1-218ENST00000523338 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.341e-11■■■■□ 21.4
UPF1Q92900 TNIP1-201ENST00000315050 2785 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.441e-11■■■■□ 21.4
UPF1Q92900 TNIP1-204ENST00000517504 562 ntTSL 510.56□□□□□ -0.721e-11■■■■□ 21.4
UPF1Q92900 HAUS2-206ENST00000567640 592 ntTSL 319.59■□□□□ 0.734e-6■■■■□ 21.4
UPF1Q92900 FBXO10-202ENST00000432825 4575 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.264e-6■■■■□ 21.4
UPF1Q92900 HAUS2-204ENST00000563479 590 ntTSL 312.48□□□□□ -0.414e-6■■■■□ 21.4
UPF1Q92900 HAUS2-205ENST00000564279 626 ntTSL 48.83□□□□□ -14e-6■■■■□ 21.4
UPF1Q92900 PDP2-206ENST00000566805 558 ntTSL 424.82■■□□□ 1.565e-10■■■■□ 21.4
UPF1Q92900 PDP2-208ENST00000568720 917 ntTSL 319.95■□□□□ 0.785e-10■■■■□ 21.4
UPF1Q92900 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.16■□□□□ 0.57e-7■■■■□ 21.4
UPF1Q92900 PDP2-201ENST00000311765 7146 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.545e-10■■■■□ 21.4
UPF1Q92900 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.242e-7■■■■□ 21.4
UPF1Q92900 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.611e-6■■■■□ 21.4
UPF1Q92900 KCTD2-202ENST00000375286 3582 ntTSL 1 (best)16.25■□□□□ 0.191e-6■■■■□ 21.4
UPF1Q92900 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.091e-13■■■■□ 21.3
UPF1Q92900 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.021e-13■■■■□ 21.3
UPF1Q92900 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.121e-13■■■■□ 21.3
UPF1Q92900 GLUL-204ENST00000417584 4065 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.361e-13■■■■□ 21.3
UPF1Q92900 GLUL-212ENST00000491322 6132 ntTSL 1 (best)10.26□□□□□ -0.771e-13■■■■□ 21.3
UPF1Q92900 FTO-207ENST00000472835 847 ntTSL 313.61□□□□□ -0.231e-9■■■■□ 21.3
UPF1Q92900 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC33.37■■■□□ 2.931e-6■■■■□ 21.3
UPF1Q92900 FBXO31-208ENST00000636077 660 ntTSL 530.33■■■□□ 2.451e-20■■■■□ 21.3
UPF1Q92900 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC30.07■■■□□ 2.41e-6■■■■□ 21.3
UPF1Q92900 DPP9-223ENST00000601720 798 ntTSL 328.58■■■□□ 2.175e-7■■■■□ 21.3
UPF1Q92900 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC28.01■■■□□ 2.071e-6■■■■□ 21.3
UPF1Q92900 AP2S1-208ENST00000600964 458 ntTSL 1 (best)27.2■■□□□ 1.941e-6■■■■□ 21.3
UPF1Q92900 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC26.8■■□□□ 1.881e-6■■■■□ 21.3
UPF1Q92900 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC26.8■■□□□ 1.881e-6■■■■□ 21.3
UPF1Q92900 FBXO31-202ENST00000561664 305 ntTSL 521.33■■□□□ 1.011e-20■■■■□ 21.3
UPF1Q92900 AP2S1-209ENST00000601498 898 ntTSL 2 BASIC16.41■□□□□ 0.221e-6■■■■□ 21.3
UPF1Q92900 STMN3-203ENST00000631920 970 ntTSL 226.44■■□□□ 1.824e-8■■■■□ 21.3
UPF1Q92900 PQLC1-205ENST00000469369 593 ntTSL 419.7■□□□□ 0.743e-13■■■■□ 21.3
UPF1Q92900 C19orf54-207ENST00000597507 947 ntTSL 225.67■■□□□ 1.71e-11■■■■□ 21.3
UPF1Q92900 C19orf54-208ENST00000598352 546 ntTSL 1 (best)17.44■□□□□ 0.381e-11■■■■□ 21.3
UPF1Q92900 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.392e-6■■■■□ 21.3
UPF1Q92900 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.362e-6■■■■□ 21.3
UPF1Q92900 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.782e-6■■■■□ 21.3
UPF1Q92900 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.23□□□□□ -0.292e-6■■■■□ 21.3
UPF1Q92900 GATD1-213ENST00000532320 1273 ntTSL 1 (best)23.47■■□□□ 1.356e-14■■■■□ 21.3
UPF1Q92900 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.794e-7■■■■□ 21.3
UPF1Q92900 DENR-202ENST00000455982 1052 ntTSL 5 BASIC36.82■■■■□ 3.481e-7■■■■□ 21.3
UPF1Q92900 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.351e-7■■■■□ 21.3
UPF1Q92900 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.11□□□□□ -0.151e-7■■■■□ 21.3
UPF1Q92900 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.433e-13■■■■□ 21.3
UPF1Q92900 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC17.68■□□□□ 0.423e-13■■■■□ 21.3
UPF1Q92900 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.233e-13■■■■□ 21.3
UPF1Q92900 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.253e-10■■■■□ 21.3
UPF1Q92900 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.556e-10■■■■□ 21.3
UPF1Q92900 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.436e-10■■■■□ 21.3
UPF1Q92900 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.376e-10■■■■□ 21.3
UPF1Q92900 DDX42-215ENST00000582985 543 ntTSL 414.37□□□□□ -0.116e-10■■■■□ 21.3
UPF1Q92900 DDX42-214ENST00000581767 2244 nt12.43□□□□□ -0.426e-10■■■■□ 21.3
UPF1Q92900 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC10.36□□□□□ -0.756e-10■■■■□ 21.3
UPF1Q92900 DDX42-217ENST00000584010 3929 ntTSL 29.05□□□□□ -0.966e-10■■■■□ 21.3
UPF1Q92900 DDX42-207ENST00000578593 2919 ntTSL 27.9□□□□□ -1.156e-10■■■■□ 21.3
UPF1Q92900 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.486e-7■■■■□ 21.3
UPF1Q92900 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.263e-6■■■■□ 21.3
UPF1Q92900 AK4-204ENST00000474968 928 ntTSL 218.71■□□□□ 0.595e-9■■■■□ 21.3
UPF1Q92900 AK4-205ENST00000479060 867 ntTSL 314.63□□□□□ -0.075e-9■■■■□ 21.3
UPF1Q92900 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.21■□□□□ 0.995e-6■■■■□ 21.3
UPF1Q92900 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.7■□□□□ 0.95e-6■■■■□ 21.3
UPF1Q92900 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.85e-6■■■■□ 21.3
UPF1Q92900 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.685e-6■■■■□ 21.3
UPF1Q92900 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.14■□□□□ 0.655e-6■■■■□ 21.3
UPF1Q92900 PCBP4-208ENST00000471308 2087 ntTSL 217.59■□□□□ 0.415e-6■■■■□ 21.3
UPF1Q92900 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.35e-6■■■■□ 21.3
UPF1Q92900 PCBP4-216ENST00000497390 2434 ntTSL 216.15■□□□□ 0.185e-6■■■■□ 21.3
UPF1Q92900 PCBP4-218ENST00000498822 2547 ntTSL 215.84■□□□□ 0.135e-6■■■■□ 21.3
UPF1Q92900 PCBP4-215ENST00000492809 2599 ntTSL 214.91□□□□□ -0.025e-6■■■■□ 21.3
UPF1Q92900 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.71■□□□□ 0.275e-6■■■■□ 21.3
UPF1Q92900 SLC8B1-214ENST00000552565 2287 ntTSL 216.11■□□□□ 0.175e-6■■■■□ 21.3
UPF1Q92900 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.035e-6■■■■□ 21.3
UPF1Q92900 SLC8B1-211ENST00000550672 2925 ntTSL 1 (best)13.44□□□□□ -0.265e-6■■■■□ 21.3
UPF1Q92900 SLC8B1-213ENST00000552014 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.385e-6■■■■□ 21.3
UPF1Q92900 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.818e-7■■■■□ 21.2
UPF1Q92900 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.263e-6■■■■□ 21.2
UPF1Q92900 ANKRD11-204ENST00000378332 1982 ntTSL 225.05■■□□□ 1.63e-6■■■■□ 21.2
UPF1Q92900 ANKRD11-206ENST00000562275 2762 ntTSL 514.25□□□□□ -0.133e-6■■■■□ 21.2
UPF1Q92900 ANKRD11-202ENST00000330736 8342 ntTSL 513.43□□□□□ -0.263e-6■■■■□ 21.2
UPF1Q92900 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.283e-6■■■■□ 21.2
UPF1Q92900 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.313e-6■■■■□ 21.2
UPF1Q92900 CRIM1-202ENST00000413985 874 ntTSL 318.11■□□□□ 0.491e-10■■■■□ 21.2
UPF1Q92900 DDI2-201ENST00000320153 2076 ntTSL 211.24□□□□□ -0.617e-8■■■■□ 21.2
UPF1Q92900 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.942e-7■■■■□ 21.2
UPF1Q92900 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC32.93■■■□□ 2.867e-9■■■■□ 21.2
UPF1Q92900 TTYH3-202ENST00000400376 560 ntTSL 424.6■■□□□ 1.532e-12■■■■□ 21.2
UPF1Q92900 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.393e-10■■■■□ 21.2
UPF1Q92900 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.363e-10■■■■□ 21.2
UPF1Q92900 ADAL-207ENST00000566154 2582 ntTSL 210.68□□□□□ -0.71e-7■■■■□ 21.2
UPF1Q92900 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.928e-7■■■■□ 21.2
UPF1Q92900 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.48■□□□□ 0.718e-7■■■■□ 21.2
UPF1Q92900 TGFBR1-209ENST00000552516 5933 ntTSL 1 (best) BASIC11.12□□□□□ -0.638e-7■■■■□ 21.2
UPF1Q92900 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-8■■■■□ 21.2
Retrieved 100 of 15,879 protein–RNA pairs in 181.7 ms