RNA–Protein interactions for RNA: ENST00000598352.1

C19orf54-208, Transcript of chromosome 19 open reading frame 54, humanhuman

TSL 1 (best)

Gene C19orf54, Length 546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C19orf54-208ENST00000598352 NISCHQ9Y2I1 1504 aa30.52■■■□□ 2.48
C19orf54-208ENST00000598352 CCDC180Q9P1Z9 1646 aa27.08■■□□□ 1.93
C19orf54-208ENST00000598352 ABCC9O60706 1549 aa26.68■■□□□ 1.86
C19orf54-208ENST00000598352 RB1CC1Q8TDY2 1594 aa25.56■■□□□ 1.68
C19orf54-208ENST00000598352 NACADO15069 1562 aa25.54■■□□□ 1.68
C19orf54-208ENST00000598352 DCAF8L2P0C7V8 631 aa25.5■■□□□ 1.67
C19orf54-208ENST00000598352 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
C19orf54-208ENST00000598352 ZCCHC6Q5VYS8 1495 aaKnown RBP25.4■■□□□ 1.66
C19orf54-208ENST00000598352 DCAF1Q9Y4B6 1507 aa25.25■■□□□ 1.63
C19orf54-208ENST00000598352 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
C19orf54-208ENST00000598352 UNC13AQ9UPW8 1703 aa24.96■■□□□ 1.59
C19orf54-208ENST00000598352 BICRAQ9NZM4 1560 aa24.88■■□□□ 1.57
C19orf54-208ENST00000598352 SCRIBQ14160 1630 aa24.73■■□□□ 1.55
C19orf54-208ENST00000598352 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
C19orf54-208ENST00000598352 SHROOM4Q9ULL8 1493 aa24.56■■□□□ 1.52
C19orf54-208ENST00000598352 EIF4G1Q04637 1599 aaKnown RBP24.18■■□□□ 1.46
C19orf54-208ENST00000598352 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
C19orf54-208ENST00000598352 CECR2Q9BXF3 1484 aa23.99■■□□□ 1.43
C19orf54-208ENST00000598352 SMARCA4P51532 1647 aa23.66■■□□□ 1.38
C19orf54-208ENST00000598352 NCAPD3P42695 1498 aa23.63■■□□□ 1.37
C19orf54-208ENST00000598352 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
C19orf54-208ENST00000598352 BAZ1AQ9NRL2 1556 aaPredicted RBP23.61■■□□□ 1.37
C19orf54-208ENST00000598352 MROH2BQ7Z745 1585 aa23.53■■□□□ 1.36
C19orf54-208ENST00000598352 SMARCA2P51531 1590 aa23.52■■□□□ 1.36
C19orf54-208ENST00000598352 PEG3Q9GZU2 1588 aa23.46■■□□□ 1.35
C19orf54-208ENST00000598352 HMGXB3Q12766 1538 aa23.45■■□□□ 1.34
C19orf54-208ENST00000598352 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
C19orf54-208ENST00000598352 RSF1Q96T23 1441 aaPredicted RBP23.25■■□□□ 1.31
C19orf54-208ENST00000598352 WIZO95785 1651 aa23.21■■□□□ 1.31
C19orf54-208ENST00000598352 NESP48681 1621 aa23.08■■□□□ 1.29
C19orf54-208ENST00000598352 TOP2AP11388 1531 aaKnown RBP22.98■■□□□ 1.27
C19orf54-208ENST00000598352 ERCC6Q03468 1493 aa22.96■■□□□ 1.27
C19orf54-208ENST00000598352 LAMC3Q9Y6N6 1575 aa22.94■■□□□ 1.26
C19orf54-208ENST00000598352 CADPSQ9ULU8 1353 aa22.93■■□□□ 1.26
C19orf54-208ENST00000598352 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
C19orf54-208ENST00000598352 CUX2O14529 1486 aa22.79■■□□□ 1.24
C19orf54-208ENST00000598352 CFTRP13569 1480 aa22.77■■□□□ 1.24
C19orf54-208ENST00000598352 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
C19orf54-208ENST00000598352 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
C19orf54-208ENST00000598352 THOC2Q8NI27 1593 aaKnown RBP22.71■■□□□ 1.23
C19orf54-208ENST00000598352 FANCD2Q9BXW9 1451 aa22.64■■□□□ 1.21
C19orf54-208ENST00000598352 MRC2Q9UBG0 1479 aa22.6■■□□□ 1.21
C19orf54-208ENST00000598352 CEP164Q9UPV0 1460 aa22.59■■□□□ 1.21
C19orf54-208ENST00000598352 WDR62O43379 1518 aa22.52■■□□□ 1.2
C19orf54-208ENST00000598352 SUPT5HO00267 1087 aaKnown RBP22.52■■□□□ 1.2
C19orf54-208ENST00000598352 URB2Q14146 1524 aaKnown RBP22.45■■□□□ 1.18
C19orf54-208ENST00000598352 PRDM2Q13029 1718 aa22.43■■□□□ 1.18
C19orf54-208ENST00000598352 DNAJC5Q9H3Z4 198 aa22.31■■□□□ 1.16
C19orf54-208ENST00000598352 TOPBP1Q92547 1522 aa22.27■■□□□ 1.16
C19orf54-208ENST00000598352 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
C19orf54-208ENST00000598352 DNMBPQ6XZF7 1577 aa22.2■■□□□ 1.14
C19orf54-208ENST00000598352 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
C19orf54-208ENST00000598352 ZNF608Q9ULD9 1512 aaPredicted RBP22.09■■□□□ 1.13
C19orf54-208ENST00000598352 POLA1P09884 1462 aaPredicted RBP22.08■■□□□ 1.12
C19orf54-208ENST00000598352 CUX1P39880 1505 aa22.07■■□□□ 1.12
C19orf54-208ENST00000598352 TARBP1Q13395 1621 aaKnown RBP22.02■■□□□ 1.12
C19orf54-208ENST00000598352 RAD54L2Q9Y4B4 1467 aa22■■□□□ 1.11
C19orf54-208ENST00000598352 FGD5Q6ZNL6 1462 aa21.99■■□□□ 1.11
C19orf54-208ENST00000598352 SOGA1O94964 1423 aa21.98■■□□□ 1.11
C19orf54-208ENST00000598352 AQRO60306 1485 aaKnown RBP eCLIP21.95■■□□□ 1.16e-6■■■■□ 25.1
C19orf54-208ENST00000598352 EIF4G3O43432 1585 aaKnown RBP21.91■■□□□ 1.1
C19orf54-208ENST00000598352 TDRD9Q8NDG6 1382 aaKnown RBP21.9■■□□□ 1.1
C19orf54-208ENST00000598352 WRNQ14191 1432 aaPredicted RBP eCLIP21.87■■□□□ 1.09
C19orf54-208ENST00000598352 OSCARQ8IYS5 282 aa21.86■■□□□ 1.09
C19orf54-208ENST00000598352 TOP2BQ02880 1626 aa21.81■■□□□ 1.08
C19orf54-208ENST00000598352 SYNJ1O43426 1573 aa21.81■■□□□ 1.08
C19orf54-208ENST00000598352 ABCA10Q8WWZ4 1543 aa21.8■■□□□ 1.08
C19orf54-208ENST00000598352 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
C19orf54-208ENST00000598352 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
C19orf54-208ENST00000598352 GRIN2BQ13224 1484 aa21.73■■□□□ 1.07
C19orf54-208ENST00000598352 GAPVD1Q14C86 1478 aa21.71■■□□□ 1.07
C19orf54-208ENST00000598352 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
C19orf54-208ENST00000598352 ABCA5Q8WWZ7 1642 aa21.67■■□□□ 1.06
C19orf54-208ENST00000598352 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
C19orf54-208ENST00000598352 FBLN2P98095 1184 aa21.65■■□□□ 1.06
C19orf54-208ENST00000598352 CHD1O14646 1710 aa21.63■■□□□ 1.05
C19orf54-208ENST00000598352 CHMP7Q8WUX9 453 aaPredicted RBP21.6■■□□□ 1.05
C19orf54-208ENST00000598352 SYNJ2O15056 1496 aa21.59■■□□□ 1.05
C19orf54-208ENST00000598352 PBRM1Q86U86 1689 aa21.58■■□□□ 1.05
C19orf54-208ENST00000598352 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
C19orf54-208ENST00000598352 ARHGEF11O15085 1522 aa21.48■■□□□ 1.03
C19orf54-208ENST00000598352 CLASP1Q7Z460 1538 aa21.48■■□□□ 1.03
C19orf54-208ENST00000598352 FHAD1B1AJZ9 1412 aa21.47■■□□□ 1.03
C19orf54-208ENST00000598352 ADAMTS12P58397 1594 aa21.47■■□□□ 1.03
C19orf54-208ENST00000598352 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
C19orf54-208ENST00000598352 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
C19orf54-208ENST00000598352 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
C19orf54-208ENST00000598352 GRIN2AQ12879 1464 aa21.45■■□□□ 1.02
C19orf54-208ENST00000598352 TRIM41Q8WV44 630 aa21.44■■□□□ 1.02
C19orf54-208ENST00000598352 IGF1RP08069 1367 aa21.42■■□□□ 1.02
C19orf54-208ENST00000598352 KIF27Q86VH2 1401 aa21.41■■□□□ 1.02
C19orf54-208ENST00000598352 NUP160Q12769 1436 aa21.39■■□□□ 1.02
C19orf54-208ENST00000598352 CEP170Q5SW79 1584 aa21.34■■□□□ 1.01
C19orf54-208ENST00000598352 ARAP1Q96P48 1450 aa21.33■■□□□ 1.01
C19orf54-208ENST00000598352 CYB5RLQ6IPT4 315 aa21.31■■□□□ 1
C19orf54-208ENST00000598352 CARMIL1Q5VZK9 1371 aa21.25■□□□□ 0.99
C19orf54-208ENST00000598352 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
C19orf54-208ENST00000598352 CUL7Q14999 1698 aa21.22■□□□□ 0.99
C19orf54-208ENST00000598352 ERCC6L2Q5T890 1561 aa21.19■□□□□ 0.98
C19orf54-208ENST00000598352 SHROOM2Q13796 1616 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms