RNA–Protein interactions for RNA: ENST00000497390.5

PCBP4-216, Transcript of poly(rC) binding protein 4, humanhuman

TSL 2

Gene PCBP4, Length 2,434 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCBP4-216ENST00000497390 NISCHQ9Y2I1 1504 aa33.78■■■■□ 3
PCBP4-216ENST00000497390 SHROOM4Q9ULL8 1493 aa29.2■■■□□ 2.26
PCBP4-216ENST00000497390 SUPT5HO00267 1087 aaKnown RBP28.6■■■□□ 2.17
PCBP4-216ENST00000497390 ZCCHC6Q5VYS8 1495 aaKnown RBP28.57■■■□□ 2.16
PCBP4-216ENST00000497390 CCDC180Q9P1Z9 1646 aa28.53■■■□□ 2.16
PCBP4-216ENST00000497390 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
PCBP4-216ENST00000497390 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
PCBP4-216ENST00000497390 CHIC1Q5VXU3 224 aa27.72■■■□□ 2.03
PCBP4-216ENST00000497390 DCAF1Q9Y4B6 1507 aa27.51■■□□□ 1.99
PCBP4-216ENST00000497390 LOC105371045A0A1W2PR82 267 aa27.08■■□□□ 1.93
PCBP4-216ENST00000497390 SCRIBQ14160 1630 aa27.05■■□□□ 1.92
PCBP4-216ENST00000497390 PCGF6Q9BYE7 350 aa27.03■■□□□ 1.92
PCBP4-216ENST00000497390 ABCC9O60706 1549 aa26.98■■□□□ 1.91
PCBP4-216ENST00000497390 HRCP23327 699 aa26.94■■□□□ 1.9
PCBP4-216ENST00000497390 RSF1Q96T23 1441 aaPredicted RBP26.83■■□□□ 1.89
PCBP4-216ENST00000497390 PPARGC1BQ86YN6 1023 aaKnown RBP26.67■■□□□ 1.86
PCBP4-216ENST00000497390 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
PCBP4-216ENST00000497390 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
PCBP4-216ENST00000497390 FAM9AQ8IZU1 332 aaPredicted RBP26.48■■□□□ 1.83
PCBP4-216ENST00000497390 TRIM41Q8WV44 630 aa26.47■■□□□ 1.83
PCBP4-216ENST00000497390 EHMT2Q96KQ7 1210 aa26.43■■□□□ 1.82
PCBP4-216ENST00000497390 MROH2BQ7Z745 1585 aa26.39■■□□□ 1.81
PCBP4-216ENST00000497390 NACADO15069 1562 aa26.37■■□□□ 1.81
PCBP4-216ENST00000497390 TRIM26Q12899 539 aaPredicted RBP26.29■■□□□ 1.8
PCBP4-216ENST00000497390 WIZO95785 1651 aa26.29■■□□□ 1.8
PCBP4-216ENST00000497390 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.74
PCBP4-216ENST00000497390 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
PCBP4-216ENST00000497390 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
PCBP4-216ENST00000497390 ABCC8Q09428 1581 aa25.78■■□□□ 1.72
PCBP4-216ENST00000497390 SMARCA4P51532 1647 aa25.73■■□□□ 1.71
PCBP4-216ENST00000497390 CCDC88BA6NC98 1476 aa25.7■■□□□ 1.7
PCBP4-216ENST00000497390 TOP2AP11388 1531 aaKnown RBP25.69■■□□□ 1.7
PCBP4-216ENST00000497390 SMARCA2P51531 1590 aa25.64■■□□□ 1.7
PCBP4-216ENST00000497390 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.69
PCBP4-216ENST00000497390 ZEB1P37275 1124 aaPredicted RBP25.55■■□□□ 1.68
PCBP4-216ENST00000497390 TTBK1Q5TCY1 1321 aaPredicted RBP25.55■■□□□ 1.68
PCBP4-216ENST00000497390 SOGA1O94964 1423 aa25.53■■□□□ 1.68
PCBP4-216ENST00000497390 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
PCBP4-216ENST00000497390 RUSC2Q8N2Y8 1516 aa25.46■■□□□ 1.67
PCBP4-216ENST00000497390 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
PCBP4-216ENST00000497390 CEP162Q5TB80 1403 aa25.34■■□□□ 1.65
PCBP4-216ENST00000497390 CCER1Q8TC90 406 aaPredicted RBP25.25■■□□□ 1.63
PCBP4-216ENST00000497390 CSRNP3Q8WYN3 585 aa25.25■■□□□ 1.63
PCBP4-216ENST00000497390 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
PCBP4-216ENST00000497390 TNIKQ9UKE5 1360 aa25.19■■□□□ 1.62
PCBP4-216ENST00000497390 WRNQ14191 1432 aaPredicted RBP eCLIP25.19■■□□□ 1.62
PCBP4-216ENST00000497390 SYNJ1O43426 1573 aa25.13■■□□□ 1.61
PCBP4-216ENST00000497390 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
PCBP4-216ENST00000497390 ATAD2BQ9ULI0 1458 aa25.06■■□□□ 1.6
PCBP4-216ENST00000497390 EEA1Q15075 1411 aa25.05■■□□□ 1.6
PCBP4-216ENST00000497390 GOLGA3Q08378 1498 aa25.04■■□□□ 1.6
PCBP4-216ENST00000497390 SCAF1Q9H7N4 1312 aaKnown RBP24.99■■□□□ 1.59
PCBP4-216ENST00000497390 BAZ1BQ9UIG0 1483 aaKnown RBP24.98■■□□□ 1.59
PCBP4-216ENST00000497390 RANGAP1P46060 587 aaPredicted RBP24.96■■□□□ 1.59
PCBP4-216ENST00000497390 CEP164Q9UPV0 1460 aa24.86■■□□□ 1.57
PCBP4-216ENST00000497390 RAPGEF2Q9Y4G8 1499 aa24.86■■□□□ 1.57
PCBP4-216ENST00000497390 KIF21BO75037 1637 aa24.83■■□□□ 1.57
PCBP4-216ENST00000497390 CLIP1P30622 1438 aa24.82■■□□□ 1.56
PCBP4-216ENST00000497390 HNRNPUL2Q1KMD3 747 aaKnown RBP24.82■■□□□ 1.56
PCBP4-216ENST00000497390 DIEXFQ68CQ4 756 aaKnown RBP24.78■■□□□ 1.56
PCBP4-216ENST00000497390 NEUROD1Q13562 356 aa24.7■■□□□ 1.54
PCBP4-216ENST00000497390 TOP2BQ02880 1626 aa24.69■■□□□ 1.54
PCBP4-216ENST00000497390 VPS8Q8N3P4 1428 aa24.68■■□□□ 1.54
PCBP4-216ENST00000497390 ACIN1Q9UKV3 1341 aaKnown RBP24.6■■□□□ 1.53
PCBP4-216ENST00000497390 BIVM-ERCC5R4GMW8 1640 aa24.57■■□□□ 1.52
PCBP4-216ENST00000497390 APLP2Q06481 763 aa24.54■■□□□ 1.52
PCBP4-216ENST00000497390 CUX1P39880 1505 aa24.53■■□□□ 1.52
PCBP4-216ENST00000497390 ZNF316A6NFI3 1004 aaPredicted RBP24.53■■□□□ 1.52
PCBP4-216ENST00000497390 PRXQ9BXM0 1461 aa24.48■■□□□ 1.51
PCBP4-216ENST00000497390 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
PCBP4-216ENST00000497390 KANK4Q5T7N3 995 aaPredicted RBP24.46■■□□□ 1.51
PCBP4-216ENST00000497390 ARAP1Q96P48 1450 aa24.46■■□□□ 1.51
PCBP4-216ENST00000497390 HMGXB3Q12766 1538 aa24.43■■□□□ 1.5
PCBP4-216ENST00000497390 GTF3C3Q9Y5Q9 886 aa24.41■■□□□ 1.5
PCBP4-216ENST00000497390 ERICH3Q5RHP9 1530 aa24.38■■□□□ 1.49
PCBP4-216ENST00000497390 YTHDC1Q96MU7 727 aaKnown RBP24.38■■□□□ 1.49
PCBP4-216ENST00000497390 MIER1Q8N108 512 aa24.34■■□□□ 1.49
PCBP4-216ENST00000497390 CFTRP13569 1480 aa24.34■■□□□ 1.49
PCBP4-216ENST00000497390 KIF27Q86VH2 1401 aa24.31■■□□□ 1.48
PCBP4-216ENST00000497390 CENPBP07199 599 aaPredicted RBP24.3■■□□□ 1.48
PCBP4-216ENST00000497390 ARHGAP35Q9NRY4 1499 aa24.23■■□□□ 1.47
PCBP4-216ENST00000497390 DHX57Q6P158 1386 aaKnown RBP24.22■■□□□ 1.47
PCBP4-216ENST00000497390 ITGAEP38570 1179 aa24.18■■□□□ 1.46
PCBP4-216ENST00000497390 CUX2O14529 1486 aa24.17■■□□□ 1.46
PCBP4-216ENST00000497390 IGF1RP08069 1367 aa24.14■■□□□ 1.45
PCBP4-216ENST00000497390 RRBP1Q9P2E9 1410 aaKnown RBP24.1■■□□□ 1.45
PCBP4-216ENST00000497390 PRDM2Q13029 1718 aa24.09■■□□□ 1.45
PCBP4-216ENST00000497390 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
PCBP4-216ENST00000497390 CADPSQ9ULU8 1353 aa24.06■■□□□ 1.44
PCBP4-216ENST00000497390 PELP1Q8IZL8 1130 aaKnown RBP24.05■■□□□ 1.44
PCBP4-216ENST00000497390 CCNB3Q8WWL7 1395 aa24.04■■□□□ 1.44
PCBP4-216ENST00000497390 P3H3Q8IVL6 736 aa24.02■■□□□ 1.44
PCBP4-216ENST00000497390 CARMIL1Q5VZK9 1371 aa24.01■■□□□ 1.43
PCBP4-216ENST00000497390 CC2D2AQ9P2K1 1620 aa23.95■■□□□ 1.42
PCBP4-216ENST00000497390 CLSPNQ9HAW4 1339 aa23.94■■□□□ 1.42
PCBP4-216ENST00000497390 TIAM1Q13009 1591 aa23.92■■□□□ 1.42
PCBP4-216ENST00000497390 RAD54L2Q9Y4B4 1467 aa23.91■■□□□ 1.42
PCBP4-216ENST00000497390 RAB3GAP2Q9H2M9 1393 aa23.9■■□□□ 1.42
PCBP4-216ENST00000497390 ATP1B4Q9UN42 357 aaPredicted RBP23.9■■□□□ 1.42
PCBP4-216ENST00000497390 PHLDB1Q86UU1 1377 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms