RNA–Protein interactions for RNA: ENST00000610535.4

TNIP1-220, Transcript of TNFAIP3 interacting protein 1, humanhuman

TSL 5 BASIC

Gene TNIP1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNIP1-220ENST00000610535 NISCHQ9Y2I1 1504 aa33.6■■■□□ 2.97
TNIP1-220ENST00000610535 SHROOM4Q9ULL8 1493 aa29.35■■■□□ 2.29
TNIP1-220ENST00000610535 SUPT5HO00267 1087 aaKnown RBP29.03■■■□□ 2.24
TNIP1-220ENST00000610535 DCAF8L2P0C7V8 631 aa28.63■■■□□ 2.17
TNIP1-220ENST00000610535 ZCCHC6Q5VYS8 1495 aaKnown RBP28.48■■■□□ 2.15
TNIP1-220ENST00000610535 CCDC180Q9P1Z9 1646 aa28.45■■■□□ 2.14
TNIP1-220ENST00000610535 MYO15BQ96JP2 1530 aa28.37■■■□□ 2.13
TNIP1-220ENST00000610535 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
TNIP1-220ENST00000610535 HRCP23327 699 aa28.32■■■□□ 2.12
TNIP1-220ENST00000610535 PCGF6Q9BYE7 350 aa28.09■■■□□ 2.09
TNIP1-220ENST00000610535 PPARGC1BQ86YN6 1023 aaKnown RBP27.83■■■□□ 2.05
TNIP1-220ENST00000610535 LOC105371045A0A1W2PR82 267 aa27.68■■■□□ 2.02
TNIP1-220ENST00000610535 DCAF1Q9Y4B6 1507 aa27.55■■■□□ 2
TNIP1-220ENST00000610535 TRIM26Q12899 539 aaPredicted RBP27.29■■□□□ 1.96
TNIP1-220ENST00000610535 ABCC9O60706 1549 aa27.26■■□□□ 1.95
TNIP1-220ENST00000610535 SCRIBQ14160 1630 aa27.06■■□□□ 1.92
TNIP1-220ENST00000610535 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
TNIP1-220ENST00000610535 RSF1Q96T23 1441 aaPredicted RBP26.87■■□□□ 1.89
TNIP1-220ENST00000610535 FAM9AQ8IZU1 332 aaPredicted RBP26.86■■□□□ 1.89
TNIP1-220ENST00000610535 ZEB1P37275 1124 aaPredicted RBP26.82■■□□□ 1.88
TNIP1-220ENST00000610535 EHMT2Q96KQ7 1210 aa26.74■■□□□ 1.87
TNIP1-220ENST00000610535 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
TNIP1-220ENST00000610535 NACADO15069 1562 aa26.49■■□□□ 1.83
TNIP1-220ENST00000610535 SCAF1Q9H7N4 1312 aaKnown RBP26.48■■□□□ 1.83
TNIP1-220ENST00000610535 CECR2Q9BXF3 1484 aa26.43■■□□□ 1.82
TNIP1-220ENST00000610535 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
TNIP1-220ENST00000610535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.25■■□□□ 1.79
TNIP1-220ENST00000610535 MROH2BQ7Z745 1585 aa26.23■■□□□ 1.79
TNIP1-220ENST00000610535 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
TNIP1-220ENST00000610535 CCER1Q8TC90 406 aaPredicted RBP26.15■■□□□ 1.78
TNIP1-220ENST00000610535 WIZO95785 1651 aa26.11■■□□□ 1.77
TNIP1-220ENST00000610535 ACIN1Q9UKV3 1341 aaKnown RBP26■■□□□ 1.75
TNIP1-220ENST00000610535 NEUROD1Q13562 356 aa25.99■■□□□ 1.75
TNIP1-220ENST00000610535 TTBK1Q5TCY1 1321 aaPredicted RBP25.97■■□□□ 1.75
TNIP1-220ENST00000610535 DIEXFQ68CQ4 756 aaKnown RBP25.89■■□□□ 1.74
TNIP1-220ENST00000610535 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
TNIP1-220ENST00000610535 UNC13AQ9UPW8 1703 aa25.85■■□□□ 1.73
TNIP1-220ENST00000610535 EIF4G1Q04637 1599 aaKnown RBP25.84■■□□□ 1.73
TNIP1-220ENST00000610535 GTF3C3Q9Y5Q9 886 aa25.78■■□□□ 1.72
TNIP1-220ENST00000610535 ABCC8Q09428 1581 aa25.78■■□□□ 1.72
TNIP1-220ENST00000610535 CCDC88BA6NC98 1476 aa25.77■■□□□ 1.72
TNIP1-220ENST00000610535 WRNQ14191 1432 aaPredicted RBP eCLIP25.72■■□□□ 1.71
TNIP1-220ENST00000610535 CEP162Q5TB80 1403 aa25.71■■□□□ 1.71
TNIP1-220ENST00000610535 CENPBP07199 599 aaPredicted RBP25.71■■□□□ 1.71
TNIP1-220ENST00000610535 SOGA1O94964 1423 aa25.67■■□□□ 1.7
TNIP1-220ENST00000610535 SMARCA4P51532 1647 aa25.63■■□□□ 1.69
TNIP1-220ENST00000610535 TNIKQ9UKE5 1360 aa25.59■■□□□ 1.69
TNIP1-220ENST00000610535 UBTFP17480 764 aaKnown RBP25.58■■□□□ 1.69
TNIP1-220ENST00000610535 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.69
TNIP1-220ENST00000610535 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
TNIP1-220ENST00000610535 CSRNP3Q8WYN3 585 aa25.55■■□□□ 1.68
TNIP1-220ENST00000610535 RUSC2Q8N2Y8 1516 aa25.54■■□□□ 1.68
TNIP1-220ENST00000610535 ZNF316A6NFI3 1004 aaPredicted RBP25.53■■□□□ 1.68
TNIP1-220ENST00000610535 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
TNIP1-220ENST00000610535 YTHDC1Q96MU7 727 aaKnown RBP25.45■■□□□ 1.67
TNIP1-220ENST00000610535 EEA1Q15075 1411 aa25.38■■□□□ 1.65
TNIP1-220ENST00000610535 HNRNPUL2Q1KMD3 747 aaKnown RBP25.37■■□□□ 1.65
TNIP1-220ENST00000610535 MIER1Q8N108 512 aa25.33■■□□□ 1.64
TNIP1-220ENST00000610535 GOLGA3Q08378 1498 aa25.33■■□□□ 1.64
TNIP1-220ENST00000610535 CLIP1P30622 1438 aa25.13■■□□□ 1.61
TNIP1-220ENST00000610535 ATAD2BQ9ULI0 1458 aa25.13■■□□□ 1.61
TNIP1-220ENST00000610535 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
TNIP1-220ENST00000610535 RANGAP1P46060 587 aaPredicted RBP25.11■■□□□ 1.61
TNIP1-220ENST00000610535 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
TNIP1-220ENST00000610535 MYT1Q01538 1121 aa25.06■■□□□ 1.6
TNIP1-220ENST00000610535 SYNJ1O43426 1573 aa25.06■■□□□ 1.6
TNIP1-220ENST00000610535 APLP2Q06481 763 aa25.06■■□□□ 1.6
TNIP1-220ENST00000610535 VPS8Q8N3P4 1428 aa25.04■■□□□ 1.6
TNIP1-220ENST00000610535 KIF21BO75037 1637 aa25.02■■□□□ 1.6
TNIP1-220ENST00000610535 RAPGEF2Q9Y4G8 1499 aa24.97■■□□□ 1.59
TNIP1-220ENST00000610535 PEG3Q9GZU2 1588 aa24.95■■□□□ 1.59
TNIP1-220ENST00000610535 DHX57Q6P158 1386 aaKnown RBP24.8■■□□□ 1.56
TNIP1-220ENST00000610535 KANK4Q5T7N3 995 aaPredicted RBP24.75■■□□□ 1.55
TNIP1-220ENST00000610535 CLSPNQ9HAW4 1339 aa24.73■■□□□ 1.55
TNIP1-220ENST00000610535 SUPT16HQ9Y5B9 1047 aaKnown RBP24.67■■□□□ 1.54
TNIP1-220ENST00000610535 ARAP1Q96P48 1450 aa24.63■■□□□ 1.53
TNIP1-220ENST00000610535 TOP2BQ02880 1626 aa24.62■■□□□ 1.53
TNIP1-220ENST00000610535 NCAPD3P42695 1498 aa24.59■■□□□ 1.53
TNIP1-220ENST00000610535 PRXQ9BXM0 1461 aa24.57■■□□□ 1.52
TNIP1-220ENST00000610535 ITGAEP38570 1179 aa24.55■■□□□ 1.52
TNIP1-220ENST00000610535 ERICH3Q5RHP9 1530 aa24.52■■□□□ 1.52
TNIP1-220ENST00000610535 RRBP1Q9P2E9 1410 aaKnown RBP24.51■■□□□ 1.51
TNIP1-220ENST00000610535 KCNH8Q96L42 1107 aa24.48■■□□□ 1.51
TNIP1-220ENST00000610535 HMGXB3Q12766 1538 aa24.48■■□□□ 1.51
TNIP1-220ENST00000610535 BIVM-ERCC5R4GMW8 1640 aa24.47■■□□□ 1.51
TNIP1-220ENST00000610535 CCNB3Q8WWL7 1395 aa24.44■■□□□ 1.5
TNIP1-220ENST00000610535 TSHZ2Q9NRE2 1034 aa24.41■■□□□ 1.5
TNIP1-220ENST00000610535 CUX2O14529 1486 aa24.4■■□□□ 1.5
TNIP1-220ENST00000610535 CUX1P39880 1505 aa24.39■■□□□ 1.49
TNIP1-220ENST00000610535 KIF27Q86VH2 1401 aa24.36■■□□□ 1.49
TNIP1-220ENST00000610535 ARHGAP35Q9NRY4 1499 aa24.36■■□□□ 1.49
TNIP1-220ENST00000610535 CFTRP13569 1480 aa24.34■■□□□ 1.49
TNIP1-220ENST00000610535 RAB3GAP2Q9H2M9 1393 aa24.34■■□□□ 1.49
TNIP1-220ENST00000610535 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.49
TNIP1-220ENST00000610535 BCANQ96GW7 911 aa24.28■■□□□ 1.48
TNIP1-220ENST00000610535 DNAJC5BQ9UF47 199 aa24.27■■□□□ 1.48
TNIP1-220ENST00000610535 MAPKBP1O60336 1514 aa24.27■■□□□ 1.48
TNIP1-220ENST00000610535 DDX10Q13206 875 aaKnown RBP24.26■■□□□ 1.47
TNIP1-220ENST00000610535 SIN3AQ96ST3 1273 aa24.24■■□□□ 1.47
TNIP1-220ENST00000610535 CADPSQ9ULU8 1353 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms