Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 LRP1-203ENST00000451724 1284 ntTSL 522.98■■□□□ 1.272e-9■■■□□ 16
NIP7Q9Y221 LRP1-211ENST00000556356 5114 ntTSL 218.2■□□□□ 0.52e-9■■■□□ 16
NIP7Q9Y221 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.155e-6■■■□□ 16
NIP7Q9Y221 RPS11-204ENST00000599167 1133 ntTSL 514.56□□□□□ -0.081e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-206ENST00000600027 944 ntTSL 514.56□□□□□ -0.081e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-207ENST00000601216 602 ntTSL 412.92□□□□□ -0.341e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-201ENST00000270625 614 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.431e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-209ENST00000602252 751 ntTSL 210.86□□□□□ -0.671e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-203ENST00000596873 583 ntTSL 2 BASIC9.75□□□□□ -0.851e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-208ENST00000601306 547 ntTSL 39.31□□□□□ -0.921e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-202ENST00000594493 575 ntTSL 3 BASIC9.28□□□□□ -0.921e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-205ENST00000599561 430 ntTSL 5 BASIC8.83□□□□□ -11e-22■■■□□ 15.7
NIP7Q9Y221 SNORD35B-201ENST00000363660 87 ntBASIC5.07□□□□□ -1.61e-22■■■□□ 15.7
NIP7Q9Y221 RPL18-211ENST00000550973 1111 ntTSL 526.74■■□□□ 1.874e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-201ENST00000084795 612 ntTSL 1 (best)22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-213ENST00000552347 1645 ntTSL 522.7■■□□□ 1.224e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-206ENST00000549370 628 ntTSL 520.89■□□□□ 0.934e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-202ENST00000546623 541 ntTSL 520.72■□□□□ 0.914e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-212ENST00000551749 2091 ntTSL 220.3■□□□□ 0.844e-7■■■□□ 15.7
NIP7Q9Y221 DSP-203ENST00000506617 754 ntTSL 318.99■□□□□ 0.634e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-204ENST00000547897 440 ntTSL 517.68■□□□□ 0.424e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.27■□□□□ 0.364e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-215ENST00000552705 1081 ntTSL 216.8■□□□□ 0.284e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-216ENST00000552851 691 ntTSL 516.46■□□□□ 0.234e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-203ENST00000547892 3844 nt13.93□□□□□ -0.184e-7■■■□□ 15.7
NIP7Q9Y221 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.44e-7■■■□□ 15.7
NIP7Q9Y221 C2-214ENST00000485690 894 ntTSL 512.28□□□□□ -0.444e-7■■■□□ 15.7
NIP7Q9Y221 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.584e-7■■■□□ 15.7
NIP7Q9Y221 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 15e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.925e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)19.02■□□□□ 0.645e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.25e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.095e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.15e-23■■■□□ 15.6
NIP7Q9Y221 RPS13-207ENST00000531008 594 ntTSL 24.16□□□□□ -1.748e-10■■■□□ 15.4
NIP7Q9Y221 SNORD14A-201ENST00000606526 91 ntBASIC2.19□□□□□ -2.068e-10■■■□□ 15.4
NIP7Q9Y221 snoU2_19.4-201ENST00000364329 80 ntBASIC0.89□□□□□ -2.274e-29■■■□□ 15.3
NIP7Q9Y221 LRRC75A-AS1-218ENST00000578380 310 ntTSL 327.99■■■□□ 2.071e-14■■■□□ 15.3
NIP7Q9Y221 SNORD49B-201ENST00000365172 72 ntBASIC-0.31□□□□□ -2.461e-14■■■□□ 15.3
NIP7Q9Y221 GAS5-211ENST00000432536 959 ntTSL 2 BASIC9.6□□□□□ -0.872e-35■■■□□ 15.2
NIP7Q9Y221 GAS5-204ENST00000421068 1060 ntTSL 26.03□□□□□ -1.443e-35■■■□□ 15.2
NIP7Q9Y221 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.193e-6■■■□□ 15.2
NIP7Q9Y221 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.76■■■■□ 3.153e-6■■■□□ 15.2
NIP7Q9Y221 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.513e-6■■■□□ 15.2
NIP7Q9Y221 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.06■■■□□ 2.083e-6■■■□□ 15.2
NIP7Q9Y221 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.84■■■□□ 2.053e-6■■■□□ 15.2
NIP7Q9Y221 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.663e-6■■■□□ 15.2
NIP7Q9Y221 MPST-207ENST00000485587 5872 ntTSL 218.5■□□□□ 0.553e-6■■■□□ 15.2
NIP7Q9Y221 C3-209ENST00000597442 469 ntTSL 315.71■□□□□ 0.117e-20■■■□□ 15.2
NIP7Q9Y221 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.921e-20■■■□□ 15
NIP7Q9Y221 UBAP2-212ENST00000629575 3460 ntTSL 29.26□□□□□ -0.931e-20■■■□□ 15
NIP7Q9Y221 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.061e-20■■■□□ 15
NIP7Q9Y221 SNHG14-218ENST00000553108 2208 ntTSL 1 (best) BASIC16.02■□□□□ 0.157e-10■■■□□ 15
NIP7Q9Y221 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.761e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.561e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.31e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.191e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.181e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.181e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.341e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.341e-323■■■□□ 14.9
NIP7Q9Y221 NCL-210ENST00000494618 910 ntTSL 23.98□□□□□ -1.771e-57■■■□□ 14.8
NIP7Q9Y221 SNORD82-201ENST00000365530 70 ntBASIC3.27□□□□□ -1.891e-57■■■□□ 14.8
NIP7Q9Y221 SORL1-204ENST00000525532 3836 ntTSL 2 BASIC10.76□□□□□ -0.694e-6■■■□□ 14.7
NIP7Q9Y221 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.067e-12■■■□□ 14.7
NIP7Q9Y221 GAS5-216ENST00000443799 897 ntTSL 512.43□□□□□ -0.422e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-203ENST00000416952 799 ntTSL 211.68□□□□□ -0.542e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-226ENST00000455838 632 ntTSL 210.43□□□□□ -0.742e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-227ENST00000456293 583 ntTSL 39.31□□□□□ -0.922e-35■■■□□ 14.7
NIP7Q9Y221 SNORD45B-201ENST00000364617 72 ntBASIC-0.17□□□□□ -2.442e-73■■■□□ 14.6
NIP7Q9Y221 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.01■□□□□ 0.472e-12■■■□□ 14.6
NIP7Q9Y221 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.022e-12■■■□□ 14.6
NIP7Q9Y221 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC9.29□□□□□ -0.922e-12■■■□□ 14.6
NIP7Q9Y221 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.381e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.04■■■□□ 2.081e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-203ENST00000594844 593 ntTSL 427.98■■■□□ 2.071e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC24.03■■□□□ 1.441e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-202ENST00000544835 1292 ntTSL 1 (best)23.75■■□□□ 1.391e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-211ENST00000601844 1548 ntTSL 522.06■■□□□ 1.121e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-207ENST00000597547 574 ntTSL 321.95■■□□□ 1.11e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.841e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-208ENST00000597611 966 ntTSL 319.98■□□□□ 0.791e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-210ENST00000599540 1140 ntTSL 217.3■□□□□ 0.361e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-203ENST00000580070 1755 ntTSL 2 BASIC15.08■□□□□ 0.011e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-202ENST00000579039 2211 ntTSL 2 BASIC12.41□□□□□ -0.421e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-207ENST00000585132 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.631e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC10.45□□□□□ -0.741e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC9.45□□□□□ -0.91e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.961e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.11e-6■■■□□ 14.6
NIP7Q9Y221 EIF4A1-216ENST00000580888 710 ntTSL 222.28■■□□□ 1.161e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.82■■□□□ 1.081e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.681e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-207ENST00000578324 1577 ntTSL 519.22■□□□□ 0.671e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-228ENST00000583389 951 ntTSL 318.55■□□□□ 0.561e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-235ENST00000584860 1109 ntTSL 317.74■□□□□ 0.431e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-236ENST00000584901 1021 ntTSL 215.33■□□□□ 0.041e-323■■■□□ 14.6
Retrieved 100 of 1,619 protein–RNA pairs in 89.4 ms