Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 LRP1-203ENST00000451724 1284 ntTSL 522.98■■□□□ 1.272e-9■■■□□ 16
NIP7Q9Y221 LRP1-211ENST00000556356 5114 ntTSL 218.2■□□□□ 0.52e-9■■■□□ 16
NIP7Q9Y221 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.155e-6■■■□□ 16
NIP7Q9Y221 RPS11-204ENST00000599167 1133 ntTSL 514.56□□□□□ -0.081e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-206ENST00000600027 944 ntTSL 514.56□□□□□ -0.081e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-207ENST00000601216 602 ntTSL 412.92□□□□□ -0.341e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-201ENST00000270625 614 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.431e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-209ENST00000602252 751 ntTSL 210.86□□□□□ -0.671e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-203ENST00000596873 583 ntTSL 2 BASIC9.75□□□□□ -0.851e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-208ENST00000601306 547 ntTSL 39.31□□□□□ -0.921e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-202ENST00000594493 575 ntTSL 3 BASIC9.28□□□□□ -0.921e-22■■■□□ 15.7
NIP7Q9Y221 RPS11-205ENST00000599561 430 ntTSL 5 BASIC8.83□□□□□ -11e-22■■■□□ 15.7
NIP7Q9Y221 SNORD35B-201ENST00000363660 87 ntBASIC5.07□□□□□ -1.61e-22■■■□□ 15.7
NIP7Q9Y221 RPL18-211ENST00000550973 1111 ntTSL 526.74■■□□□ 1.874e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-201ENST00000084795 612 ntTSL 1 (best)22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.81■■□□□ 1.244e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-213ENST00000552347 1645 ntTSL 522.7■■□□□ 1.224e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-206ENST00000549370 628 ntTSL 520.89■□□□□ 0.934e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-202ENST00000546623 541 ntTSL 520.72■□□□□ 0.914e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-212ENST00000551749 2091 ntTSL 220.3■□□□□ 0.844e-7■■■□□ 15.7
NIP7Q9Y221 DSP-203ENST00000506617 754 ntTSL 318.99■□□□□ 0.634e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-204ENST00000547897 440 ntTSL 517.68■□□□□ 0.424e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.27■□□□□ 0.364e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-215ENST00000552705 1081 ntTSL 216.8■□□□□ 0.284e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-216ENST00000552851 691 ntTSL 516.46■□□□□ 0.234e-7■■■□□ 15.7
NIP7Q9Y221 RPL18-203ENST00000547892 3844 nt13.93□□□□□ -0.184e-7■■■□□ 15.7
NIP7Q9Y221 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.44e-7■■■□□ 15.7
NIP7Q9Y221 C2-214ENST00000485690 894 ntTSL 512.28□□□□□ -0.444e-7■■■□□ 15.7
NIP7Q9Y221 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.584e-7■■■□□ 15.7
NIP7Q9Y221 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 15e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.925e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)19.02■□□□□ 0.645e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.25e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.095e-23■■■□□ 15.6
NIP7Q9Y221 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.15e-23■■■□□ 15.6
NIP7Q9Y221 RPS13-207ENST00000531008 594 ntTSL 24.16□□□□□ -1.748e-10■■■□□ 15.4
NIP7Q9Y221 SNORD14A-201ENST00000606526 91 ntBASIC2.19□□□□□ -2.068e-10■■■□□ 15.4
NIP7Q9Y221 snoU2_19.4-201ENST00000364329 80 ntBASIC0.89□□□□□ -2.274e-29■■■□□ 15.3
NIP7Q9Y221 LRRC75A-AS1-218ENST00000578380 310 ntTSL 327.99■■■□□ 2.071e-14■■■□□ 15.3
NIP7Q9Y221 SNORD49B-201ENST00000365172 72 ntBASIC-0.31□□□□□ -2.461e-14■■■□□ 15.3
NIP7Q9Y221 GAS5-211ENST00000432536 959 ntTSL 2 BASIC9.6□□□□□ -0.872e-35■■■□□ 15.2
NIP7Q9Y221 GAS5-204ENST00000421068 1060 ntTSL 26.03□□□□□ -1.443e-35■■■□□ 15.2
NIP7Q9Y221 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.193e-6■■■□□ 15.2
NIP7Q9Y221 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.76■■■■□ 3.153e-6■■■□□ 15.2
NIP7Q9Y221 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.513e-6■■■□□ 15.2
NIP7Q9Y221 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.06■■■□□ 2.083e-6■■■□□ 15.2
NIP7Q9Y221 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.84■■■□□ 2.053e-6■■■□□ 15.2
NIP7Q9Y221 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.663e-6■■■□□ 15.2
NIP7Q9Y221 MPST-207ENST00000485587 5872 ntTSL 218.5■□□□□ 0.553e-6■■■□□ 15.2
NIP7Q9Y221 C3-209ENST00000597442 469 ntTSL 315.71■□□□□ 0.117e-20■■■□□ 15.2
NIP7Q9Y221 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.921e-20■■■□□ 15
NIP7Q9Y221 UBAP2-212ENST00000629575 3460 ntTSL 29.26□□□□□ -0.931e-20■■■□□ 15
NIP7Q9Y221 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.061e-20■■■□□ 15
NIP7Q9Y221 SNHG14-218ENST00000553108 2208 ntTSL 1 (best) BASIC16.02■□□□□ 0.157e-10■■■□□ 15
NIP7Q9Y221 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.761e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.561e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.31e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.191e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.181e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.181e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.341e-323■■■□□ 14.9
NIP7Q9Y221 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.341e-323■■■□□ 14.9
NIP7Q9Y221 NCL-210ENST00000494618 910 ntTSL 23.98□□□□□ -1.771e-57■■■□□ 14.8
NIP7Q9Y221 SNORD82-201ENST00000365530 70 ntBASIC3.27□□□□□ -1.891e-57■■■□□ 14.8
NIP7Q9Y221 SORL1-204ENST00000525532 3836 ntTSL 2 BASIC10.76□□□□□ -0.694e-6■■■□□ 14.7
NIP7Q9Y221 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.067e-12■■■□□ 14.7
NIP7Q9Y221 GAS5-216ENST00000443799 897 ntTSL 512.43□□□□□ -0.422e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-203ENST00000416952 799 ntTSL 211.68□□□□□ -0.542e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-226ENST00000455838 632 ntTSL 210.43□□□□□ -0.742e-35■■■□□ 14.7
NIP7Q9Y221 GAS5-227ENST00000456293 583 ntTSL 39.31□□□□□ -0.922e-35■■■□□ 14.7
NIP7Q9Y221 SNORD45B-201ENST00000364617 72 ntBASIC-0.17□□□□□ -2.442e-73■■■□□ 14.6
NIP7Q9Y221 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.01■□□□□ 0.472e-12■■■□□ 14.6
NIP7Q9Y221 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.022e-12■■■□□ 14.6
NIP7Q9Y221 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC9.29□□□□□ -0.922e-12■■■□□ 14.6
NIP7Q9Y221 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.381e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.04■■■□□ 2.081e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-203ENST00000594844 593 ntTSL 427.98■■■□□ 2.071e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC24.03■■□□□ 1.441e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-202ENST00000544835 1292 ntTSL 1 (best)23.75■■□□□ 1.391e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-211ENST00000601844 1548 ntTSL 522.06■■□□□ 1.121e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-207ENST00000597547 574 ntTSL 321.95■■□□□ 1.11e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.841e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-208ENST00000597611 966 ntTSL 319.98■□□□□ 0.791e-6■■■□□ 14.6
NIP7Q9Y221 FKBP8-210ENST00000599540 1140 ntTSL 217.3■□□□□ 0.361e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-203ENST00000580070 1755 ntTSL 2 BASIC15.08■□□□□ 0.011e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-202ENST00000579039 2211 ntTSL 2 BASIC12.41□□□□□ -0.421e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-207ENST00000585132 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.631e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC10.45□□□□□ -0.741e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC9.45□□□□□ -0.91e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.961e-6■■■□□ 14.6
NIP7Q9Y221 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.11e-6■■■□□ 14.6
NIP7Q9Y221 EIF4A1-216ENST00000580888 710 ntTSL 222.28■■□□□ 1.161e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.82■■□□□ 1.081e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.681e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-207ENST00000578324 1577 ntTSL 519.22■□□□□ 0.671e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-228ENST00000583389 951 ntTSL 318.55■□□□□ 0.561e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-235ENST00000584860 1109 ntTSL 317.74■□□□□ 0.431e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-236ENST00000584901 1021 ntTSL 215.33■□□□□ 0.041e-323■■■□□ 14.6
Retrieved 100 of 1,619 protein–RNA pairs in 21.4 ms