RNA–Protein interactions for RNA: ENST00000556356.1

LRP1-211, Transcript of LDL receptor related protein 1, humanhuman

TSL 2

Gene LRP1, Length 5,114 nt, Biotype retained intron, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-211ENST00000556356 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
LRP1-211ENST00000556356 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
LRP1-211ENST00000556356 SHROOM4Q9ULL8 1493 aa25.89■■□□□ 1.74
LRP1-211ENST00000556356 SUPT5HO00267 1087 aaKnown RBP25.89■■□□□ 1.73
LRP1-211ENST00000556356 EHMT2Q96KQ7 1210 aa24.66■■□□□ 1.54
LRP1-211ENST00000556356 ABCC9O60706 1549 aa24.45■■□□□ 1.5
LRP1-211ENST00000556356 FAM9AQ8IZU1 332 aaPredicted RBP24.38■■□□□ 1.49
LRP1-211ENST00000556356 APLP2Q06481 763 aa24.32■■□□□ 1.48
LRP1-211ENST00000556356 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
LRP1-211ENST00000556356 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.422e-6■■□□□ 11.7
LRP1-211ENST00000556356 RANGAP1P46060 587 aaPredicted RBP23.91■■□□□ 1.42
LRP1-211ENST00000556356 UBTFP17480 764 aaKnown RBP23.78■■□□□ 1.4
LRP1-211ENST00000556356 ATP1B4Q9UN42 357 aaPredicted RBP23.74■■□□□ 1.39
LRP1-211ENST00000556356 TTBK1Q5TCY1 1321 aaPredicted RBP23.7■■□□□ 1.38
LRP1-211ENST00000556356 CCDC180Q9P1Z9 1646 aa23.56■■□□□ 1.36
LRP1-211ENST00000556356 ZCCHC6Q5VYS8 1495 aaKnown RBP23.29■■□□□ 1.32
LRP1-211ENST00000556356 PCGF6Q9BYE7 350 aa23.23■■□□□ 1.31
LRP1-211ENST00000556356 SCRIBQ14160 1630 aa23.21■■□□□ 1.31
LRP1-211ENST00000556356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.17■■□□□ 1.3
LRP1-211ENST00000556356 HNRNPUL2Q1KMD3 747 aaKnown RBP23.17■■□□□ 1.3
LRP1-211ENST00000556356 CHIC1Q5VXU3 224 aa23.15■■□□□ 1.3
LRP1-211ENST00000556356 RB1CC1Q8TDY2 1594 aa23.07■■□□□ 1.28
LRP1-211ENST00000556356 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
LRP1-211ENST00000556356 MYT1LQ9UL68 1186 aa22.97■■□□□ 1.27
LRP1-211ENST00000556356 PPARGC1BQ86YN6 1023 aaKnown RBP22.92■■□□□ 1.26
LRP1-211ENST00000556356 LOC105371045A0A1W2PR82 267 aa22.86■■□□□ 1.25
LRP1-211ENST00000556356 NACADO15069 1562 aa22.86■■□□□ 1.25
LRP1-211ENST00000556356 ZEB1P37275 1124 aaPredicted RBP22.84■■□□□ 1.25
LRP1-211ENST00000556356 FBLN2P98095 1184 aa22.81■■□□□ 1.24
LRP1-211ENST00000556356 ITGAEP38570 1179 aa22.74■■□□□ 1.23
LRP1-211ENST00000556356 TRIM26Q12899 539 aaPredicted RBP22.63■■□□□ 1.21
LRP1-211ENST00000556356 PELP1Q8IZL8 1130 aaKnown RBP22.53■■□□□ 1.2
LRP1-211ENST00000556356 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
LRP1-211ENST00000556356 DCAF1Q9Y4B6 1507 aa22.43■■□□□ 1.18
LRP1-211ENST00000556356 FAM50AQ14320 339 aaKnown RBP22.4■■□□□ 1.18
LRP1-211ENST00000556356 P3H3Q8IVL6 736 aa22.32■■□□□ 1.16
LRP1-211ENST00000556356 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
LRP1-211ENST00000556356 RSF1Q96T23 1441 aaPredicted RBP22.26■■□□□ 1.15
LRP1-211ENST00000556356 ARID3CA6NKF2 412 aa22.2■■□□□ 1.14
LRP1-211ENST00000556356 TRIM52Q96A61 297 aa22.19■■□□□ 1.14
LRP1-211ENST00000556356 CDK11AQ9UQ88 783 aaPredicted RBP22.17■■□□□ 1.14
LRP1-211ENST00000556356 POLR3GLQ9BT43 218 aa22.16■■□□□ 1.14
LRP1-211ENST00000556356 CENPBP07199 599 aaPredicted RBP22.15■■□□□ 1.14
LRP1-211ENST00000556356 BAZ1AQ9NRL2 1556 aaPredicted RBP22.15■■□□□ 1.14
LRP1-211ENST00000556356 NPM1P06748 294 aaKnown RBP eCLIP22.11■■□□□ 1.13
LRP1-211ENST00000556356 CHMP7Q8WUX9 453 aaPredicted RBP22.11■■□□□ 1.13
LRP1-211ENST00000556356 ERCC6Q03468 1493 aa22.02■■□□□ 1.12
LRP1-211ENST00000556356 CECR2Q9BXF3 1484 aa22■■□□□ 1.11
LRP1-211ENST00000556356 ZNF777Q9ULD5 760 aaPredicted RBP22■■□□□ 1.11
LRP1-211ENST00000556356 MYO15BQ96JP2 1530 aa21.97■■□□□ 1.11
LRP1-211ENST00000556356 SLC4A1APQ9BWU0 796 aaKnown RBP21.92■■□□□ 1.1
LRP1-211ENST00000556356 WRNQ14191 1432 aaPredicted RBP eCLIP21.9■■□□□ 1.1
LRP1-211ENST00000556356 YTHDC1Q96MU7 727 aaKnown RBP21.86■■□□□ 1.09
LRP1-211ENST00000556356 NEFLP07196 543 aa21.86■■□□□ 1.09
LRP1-211ENST00000556356 NEUROD1Q13562 356 aa21.86■■□□□ 1.09
LRP1-211ENST00000556356 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
LRP1-211ENST00000556356 HRCP23327 699 aa21.81■■□□□ 1.08
LRP1-211ENST00000556356 ESF1Q9H501 851 aaKnown RBP21.81■■□□□ 1.08
LRP1-211ENST00000556356 CNGB1Q14028 1251 aaPredicted RBP21.8■■□□□ 1.08
LRP1-211ENST00000556356 EEA1Q15075 1411 aa21.79■■□□□ 1.08
LRP1-211ENST00000556356 KIF27Q86VH2 1401 aa21.76■■□□□ 1.07
LRP1-211ENST00000556356 ZNF326Q5BKZ1 582 aaKnown RBP21.76■■□□□ 1.07
LRP1-211ENST00000556356 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
LRP1-211ENST00000556356 BCANQ96GW7 911 aa21.71■■□□□ 1.07
LRP1-211ENST00000556356 PDS5BQ9NTI5 1447 aa21.66■■□□□ 1.06
LRP1-211ENST00000556356 CLIP1P30622 1438 aa21.65■■□□□ 1.06
LRP1-211ENST00000556356 MTUS2Q5JR59 1369 aa21.65■■□□□ 1.06
LRP1-211ENST00000556356 GOLGA3Q08378 1498 aa21.63■■□□□ 1.05
LRP1-211ENST00000556356 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
LRP1-211ENST00000556356 TSPY4P0CV99 314 aa21.57■■□□□ 1.04
LRP1-211ENST00000556356 TSPY10P0CW01 314 aa21.57■■□□□ 1.04
LRP1-211ENST00000556356 PLEKHD1A6NEE1 506 aa21.56■■□□□ 1.04
LRP1-211ENST00000556356 STAG3Q9UJ98 1225 aa21.54■■□□□ 1.04
LRP1-211ENST00000556356 KCNH8Q96L42 1107 aa21.53■■□□□ 1.04
LRP1-211ENST00000556356 CEP164Q9UPV0 1460 aa21.5■■□□□ 1.03
LRP1-211ENST00000556356 PLPPR3Q6T4P5 718 aa21.5■■□□□ 1.03
LRP1-211ENST00000556356 CUX2O14529 1486 aa21.5■■□□□ 1.03
LRP1-211ENST00000556356 CHGAP10645 457 aaKnown RBP21.49■■□□□ 1.03
LRP1-211ENST00000556356 CHIC2Q9UKJ5 165 aa21.49■■□□□ 1.03
LRP1-211ENST00000556356 ATAD2BQ9ULI0 1458 aa21.46■■□□□ 1.03
LRP1-211ENST00000556356 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
LRP1-211ENST00000556356 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
LRP1-211ENST00000556356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.44■■□□□ 1.02
LRP1-211ENST00000556356 CARMIL1Q5VZK9 1371 aa21.42■■□□□ 1.02
LRP1-211ENST00000556356 ERICH6Q7L0X2 663 aa21.41■■□□□ 1.02
LRP1-211ENST00000556356 CEP162Q5TB80 1403 aa21.41■■□□□ 1.02
LRP1-211ENST00000556356 WIZO95785 1651 aa21.39■■□□□ 1.01
LRP1-211ENST00000556356 DIEXFQ68CQ4 756 aaKnown RBP21.39■■□□□ 1.01
LRP1-211ENST00000556356 SMARCA4P51532 1647 aa21.38■■□□□ 1.01
LRP1-211ENST00000556356 SOGA1O94964 1423 aa21.37■■□□□ 1.01
LRP1-211ENST00000556356 TNIKQ9UKE5 1360 aa21.37■■□□□ 1.01
LRP1-211ENST00000556356 EIF4G1Q04637 1599 aaKnown RBP21.33■■□□□ 1.01
LRP1-211ENST00000556356 TONSLQ96HA7 1378 aa21.33■■□□□ 1
LRP1-211ENST00000556356 ANP32CO43423 234 aa21.3■■□□□ 1
LRP1-211ENST00000556356 CFDP1Q9UEE9 299 aaPredicted RBP21.29■■□□□ 1
LRP1-211ENST00000556356 TDRD9Q8NDG6 1382 aaKnown RBP21.29■■□□□ 1
LRP1-211ENST00000556356 ABCC8Q09428 1581 aa21.24■□□□□ 0.99
LRP1-211ENST00000556356 RRP7BPQ9NSQ0 103 aa21.21■□□□□ 0.99
LRP1-211ENST00000556356 FHAD1B1AJZ9 1412 aa21.2■□□□□ 0.98
LRP1-211ENST00000556356 CARMIL2Q6F5E8 1435 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms