RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 DCAF8L2P0C7V8 631 aa12.44□□□□□ -0.42
SF3B3-201ENST00000302516 PELP1Q8IZL8 1130 aaKnown RBP12.43□□□□□ -0.42
SF3B3-201ENST00000302516 NISCHQ9Y2I1 1504 aa12.42□□□□□ -0.42
SF3B3-201ENST00000302516 SUPT5HO00267 1087 aaKnown RBP12.07□□□□□ -0.48
SF3B3-201ENST00000302516 MYT1Q01538 1121 aa11.95□□□□□ -0.5
SF3B3-201ENST00000302516 APLP2Q06481 763 aa11.84□□□□□ -0.51
SF3B3-201ENST00000302516 SHROOM4Q9ULL8 1493 aa11.83□□□□□ -0.52
SF3B3-201ENST00000302516 ZEB1P37275 1124 aaPredicted RBP11.82□□□□□ -0.52
SF3B3-201ENST00000302516 CCER1Q8TC90 406 aaPredicted RBP11.8□□□□□ -0.52
SF3B3-201ENST00000302516 CENPBP07199 599 aaPredicted RBP11.8□□□□□ -0.52
SF3B3-201ENST00000302516 ERICH6Q7L0X2 663 aa11.69□□□□□ -0.54
SF3B3-201ENST00000302516 FAM9AQ8IZU1 332 aaPredicted RBP11.65□□□□□ -0.54
SF3B3-201ENST00000302516 PCGF6Q9BYE7 350 aa11.57□□□□□ -0.56
SF3B3-201ENST00000302516 EHMT2Q96KQ7 1210 aa11.51□□□□□ -0.57
SF3B3-201ENST00000302516 NEFLP07196 543 aa11.49□□□□□ -0.57
SF3B3-201ENST00000302516 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
SF3B3-201ENST00000302516 YTHDC1Q96MU7 727 aaKnown RBP11.29□□□□□ -0.6
SF3B3-201ENST00000302516 TTBK1Q5TCY1 1321 aaPredicted RBP11.25□□□□□ -0.61
SF3B3-201ENST00000302516 TRIM26Q12899 539 aaPredicted RBP11.24□□□□□ -0.61
SF3B3-201ENST00000302516 UBTFP17480 764 aaKnown RBP11.19□□□□□ -0.62
SF3B3-201ENST00000302516 DAXXQ9UER7 740 aaPredicted RBP11.19□□□□□ -0.62
SF3B3-201ENST00000302516 HRCP23327 699 aa11.16□□□□□ -0.62
SF3B3-201ENST00000302516 ATP1B4Q9UN42 357 aaPredicted RBP11.06□□□□□ -0.64
SF3B3-201ENST00000302516 RANGAP1P46060 587 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-201ENST00000302516 RTL5Q5HYW3 569 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-201ENST00000302516 ZNF316A6NFI3 1004 aaPredicted RBP10.93□□□□□ -0.66
SF3B3-201ENST00000302516 DIEXFQ68CQ4 756 aaKnown RBP10.87□□□□□ -0.67
SF3B3-201ENST00000302516 CLSPNQ9HAW4 1339 aa10.83□□□□□ -0.68
SF3B3-201ENST00000302516 CHIC1Q5VXU3 224 aa10.8□□□□□ -0.68
SF3B3-201ENST00000302516 PPARGC1BQ86YN6 1023 aaKnown RBP10.78□□□□□ -0.68
SF3B3-201ENST00000302516 POLR3GLQ9BT43 218 aa10.74□□□□□ -0.69
SF3B3-201ENST00000302516 HNRNPUL2Q1KMD3 747 aaKnown RBP10.73□□□□□ -0.69
SF3B3-201ENST00000302516 ITGAEP38570 1179 aa10.72□□□□□ -0.69
SF3B3-201ENST00000302516 CDK11AQ9UQ88 783 aaPredicted RBP10.71□□□□□ -0.69
SF3B3-201ENST00000302516 MYT1LQ9UL68 1186 aa10.68□□□□□ -0.7
SF3B3-201ENST00000302516 ANP32CO43423 234 aa10.67□□□□□ -0.7
SF3B3-201ENST00000302516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.67□□□□□ -0.7
SF3B3-201ENST00000302516 LOC105371045A0A1W2PR82 267 aa10.66□□□□□ -0.7
SF3B3-201ENST00000302516 GTF3C3Q9Y5Q9 886 aa10.64□□□□□ -0.71
SF3B3-201ENST00000302516 DCAF1Q9Y4B6 1507 aa10.61□□□□□ -0.71
SF3B3-201ENST00000302516 ANP32AP39687 249 aaKnown RBP10.61□□□□□ -0.71
SF3B3-201ENST00000302516 CCDC180Q9P1Z9 1646 aa10.6□□□□□ -0.71
SF3B3-201ENST00000302516 ZBTB47Q9UFB7 747 aaPredicted RBP10.6□□□□□ -0.71
SF3B3-201ENST00000302516 FAM50AQ14320 339 aaKnown RBP10.57□□□□□ -0.72
SF3B3-201ENST00000302516 ACIN1Q9UKV3 1341 aaKnown RBP10.57□□□□□ -0.72
SF3B3-201ENST00000302516 SLC4A1APQ9BWU0 796 aaKnown RBP10.55□□□□□ -0.72
SF3B3-201ENST00000302516 GLIPR1L2Q4G1C9 344 aa10.53□□□□□ -0.72
SF3B3-201ENST00000302516 ANP32BQ92688 251 aaKnown RBP10.51□□□□□ -0.73
SF3B3-201ENST00000302516 TRIM52Q96A61 297 aa10.51□□□□□ -0.73
SF3B3-201ENST00000302516 CANXP27824 592 aaKnown RBP10.5□□□□□ -0.73
SF3B3-201ENST00000302516 BCANQ96GW7 911 aa10.48□□□□□ -0.73
SF3B3-201ENST00000302516 NEUROD1Q13562 356 aa10.47□□□□□ -0.73
SF3B3-201ENST00000302516 CNGB1Q14028 1251 aaPredicted RBP10.47□□□□□ -0.73
SF3B3-201ENST00000302516 NEFMP07197 916 aa10.45□□□□□ -0.74
SF3B3-201ENST00000302516 UPF2Q9HAU5 1272 aaKnown RBP10.41□□□□□ -0.74
SF3B3-201ENST00000302516 SCRIBQ14160 1630 aa10.37□□□□□ -0.75
SF3B3-201ENST00000302516 TONSLQ96HA7 1378 aa10.36□□□□□ -0.75
SF3B3-201ENST00000302516 ZNF326Q5BKZ1 582 aaKnown RBP10.36□□□□□ -0.75
SF3B3-201ENST00000302516 ZCCHC6Q5VYS8 1495 aaKnown RBP10.35□□□□□ -0.75
SF3B3-201ENST00000302516 HSP90AA1P07900 732 aaKnown RBP10.34□□□□□ -0.75
SF3B3-201ENST00000302516 ABCC9O60706 1549 aa10.29□□□□□ -0.76
SF3B3-201ENST00000302516 EIF5BO60841 1220 aaKnown RBP10.29□□□□□ -0.76
SF3B3-201ENST00000302516 FKBP8Q14318 412 aa10.29□□□□□ -0.76
SF3B3-201ENST00000302516 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.29□□□□□ -0.76
SF3B3-201ENST00000302516 NPM2Q86SE8 214 aaKnown RBP10.28□□□□□ -0.76
SF3B3-201ENST00000302516 ANP32EQ9BTT0 268 aa10.27□□□□□ -0.76
SF3B3-201ENST00000302516 CSRNP3Q8WYN3 585 aa10.27□□□□□ -0.77
SF3B3-201ENST00000302516 DDRGK1Q96HY6 314 aa10.25□□□□□ -0.77
SF3B3-201ENST00000302516 EEA1Q15075 1411 aa10.23□□□□□ -0.77
SF3B3-201ENST00000302516 HNRNPUQ00839 825 aaKnown RBP eCLIP10.23□□□□□ -0.77
SF3B3-201ENST00000302516 CCDC136Q96JN2 1154 aa10.22□□□□□ -0.77
SF3B3-201ENST00000302516 BECN1Q14457 450 aa10.2□□□□□ -0.78
SF3B3-201ENST00000302516 SLC24A1O60721 1099 aa10.17□□□□□ -0.78
SF3B3-201ENST00000302516 MYH16Q9H6N6 1097 aa10.16□□□□□ -0.78
SF3B3-201ENST00000302516 GOLGA3Q08378 1498 aa10.15□□□□□ -0.78
SF3B3-201ENST00000302516 TMC1Q8TDI8 760 aa10.14□□□□□ -0.79
SF3B3-201ENST00000302516 NBR1Q14596 966 aa10.14□□□□□ -0.79
SF3B3-201ENST00000302516 CLIP1P30622 1438 aa10.14□□□□□ -0.79
SF3B3-201ENST00000302516 TNNT2P45379 298 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-201ENST00000302516 WDR43Q15061 677 aaKnown RBP eCLIP10.13□□□□□ -0.791e-22■■□□□ 14.2
SF3B3-201ENST00000302516 GOLGA6L22H0YM25 854 aa10.13□□□□□ -0.79
SF3B3-201ENST00000302516 RB1CC1Q8TDY2 1594 aa10.12□□□□□ -0.79
SF3B3-201ENST00000302516 SCAF1Q9H7N4 1312 aaKnown RBP10.12□□□□□ -0.79
SF3B3-201ENST00000302516 FAM9BQ8IZU0 186 aa10.12□□□□□ -0.79
SF3B3-201ENST00000302516 RSF1Q96T23 1441 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-201ENST00000302516 TRIM44Q96DX7 344 aaPredicted RBP10.1□□□□□ -0.79
SF3B3-201ENST00000302516 DDX10Q13206 875 aaKnown RBP10.1□□□□□ -0.79
SF3B3-201ENST00000302516 PABPN1Q86U42 306 aaKnown RBP eCLIP10.1□□□□□ -0.79
SF3B3-201ENST00000302516 MRS2Q9HD23 443 aa10.1□□□□□ -0.79
SF3B3-201ENST00000302516 BCL11AQ9H165 835 aa10.09□□□□□ -0.79
SF3B3-201ENST00000302516 NCLP19338 710 aaKnown RBP10.08□□□□□ -0.8
SF3B3-201ENST00000302516 ERICH6BQ5W0A0 696 aa10.07□□□□□ -0.8
SF3B3-201ENST00000302516 PPM1GO15355 546 aaPredicted RBP10.07□□□□□ -0.8
SF3B3-201ENST00000302516 MTUS2Q5JR59 1369 aa10.07□□□□□ -0.8
SF3B3-201ENST00000302516 ZNF777Q9ULD5 760 aaPredicted RBP10.07□□□□□ -0.8
SF3B3-201ENST00000302516 FBLN2P98095 1184 aa10.06□□□□□ -0.8
SF3B3-201ENST00000302516 CEP162Q5TB80 1403 aa10.05□□□□□ -0.8
SF3B3-201ENST00000302516 CEP164Q9UPV0 1460 aa10.05□□□□□ -0.8
SF3B3-201ENST00000302516 NACADO15069 1562 aa10.05□□□□□ -0.8
SF3B3-201ENST00000302516 CASC1Q6TDU7 716 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms