RNA–Protein interactions for RNA: ENST00000588216.5

TNPO2-210, Transcript of transportin 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TNPO2, Length 3,056 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNPO2-210ENST00000588216 NISCHQ9Y2I1 1504 aa26.19■■□□□ 1.78
TNPO2-210ENST00000588216 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
TNPO2-210ENST00000588216 DCAF8L2P0C7V8 631 aa22.21■■□□□ 1.15
TNPO2-210ENST00000588216 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
TNPO2-210ENST00000588216 ZCCHC6Q5VYS8 1495 aaKnown RBP22■■□□□ 1.11
TNPO2-210ENST00000588216 ABCC9O60706 1549 aa21.57■■□□□ 1.04
TNPO2-210ENST00000588216 DCAF1Q9Y4B6 1507 aa21.39■■□□□ 1.02
TNPO2-210ENST00000588216 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.01
TNPO2-210ENST00000588216 SCRIBQ14160 1630 aa21.09■□□□□ 0.97
TNPO2-210ENST00000588216 MYO15BQ96JP2 1530 aa20.99■□□□□ 0.95
TNPO2-210ENST00000588216 NACADO15069 1562 aa20.97■□□□□ 0.95
TNPO2-210ENST00000588216 RB1CC1Q8TDY2 1594 aa20.79■□□□□ 0.92
TNPO2-210ENST00000588216 PABPN1Q86U42 306 aaKnown RBP eCLIP20.58■□□□□ 0.889e-7■□□□□ 8.3
TNPO2-210ENST00000588216 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
TNPO2-210ENST00000588216 RSF1Q96T23 1441 aaPredicted RBP20.53■□□□□ 0.88
TNPO2-210ENST00000588216 UNC13AQ9UPW8 1703 aa20.4■□□□□ 0.86
TNPO2-210ENST00000588216 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
TNPO2-210ENST00000588216 MROH2BQ7Z745 1585 aa20.37■□□□□ 0.85
TNPO2-210ENST00000588216 BICRAQ9NZM4 1560 aa20.23■□□□□ 0.83
TNPO2-210ENST00000588216 WIZO95785 1651 aa20.21■□□□□ 0.83
TNPO2-210ENST00000588216 BAZ1AQ9NRL2 1556 aaPredicted RBP20.15■□□□□ 0.82
TNPO2-210ENST00000588216 SMARCA4P51532 1647 aa20.05■□□□□ 0.8
TNPO2-210ENST00000588216 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
TNPO2-210ENST00000588216 HRCP23327 699 aa19.91■□□□□ 0.78
TNPO2-210ENST00000588216 LOC105371045A0A1W2PR82 267 aa19.84■□□□□ 0.77
TNPO2-210ENST00000588216 TOP2AP11388 1531 aaKnown RBP19.83■□□□□ 0.77
TNPO2-210ENST00000588216 FAM9AQ8IZU1 332 aaPredicted RBP19.82■□□□□ 0.76
TNPO2-210ENST00000588216 CCDC88BA6NC98 1476 aa19.81■□□□□ 0.76
TNPO2-210ENST00000588216 EHMT2Q96KQ7 1210 aa19.75■□□□□ 0.75
TNPO2-210ENST00000588216 ATAD2BQ9ULI0 1458 aa19.74■□□□□ 0.75
TNPO2-210ENST00000588216 SMARCA2P51531 1590 aa19.72■□□□□ 0.75
TNPO2-210ENST00000588216 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
TNPO2-210ENST00000588216 EIF4G1Q04637 1599 aaKnown RBP19.64■□□□□ 0.73
TNPO2-210ENST00000588216 PEG3Q9GZU2 1588 aa19.64■□□□□ 0.73
TNPO2-210ENST00000588216 PELP1Q8IZL8 1130 aaKnown RBP19.62■□□□□ 0.73
TNPO2-210ENST00000588216 ABCC8Q09428 1581 aa19.58■□□□□ 0.72
TNPO2-210ENST00000588216 NCAPD3P42695 1498 aa19.45■□□□□ 0.7
TNPO2-210ENST00000588216 HMGXB3Q12766 1538 aa19.33■□□□□ 0.69
TNPO2-210ENST00000588216 CC2D2AQ9P2K1 1620 aa19.32■□□□□ 0.68
TNPO2-210ENST00000588216 WRNQ14191 1432 aaPredicted RBP eCLIP19.32■□□□□ 0.68
TNPO2-210ENST00000588216 PPARGC1BQ86YN6 1023 aaKnown RBP19.31■□□□□ 0.68
TNPO2-210ENST00000588216 SOGA1O94964 1423 aa19.3■□□□□ 0.68
TNPO2-210ENST00000588216 PCGF6Q9BYE7 350 aa19.28■□□□□ 0.68
TNPO2-210ENST00000588216 RUSC2Q8N2Y8 1516 aa19.24■□□□□ 0.67
TNPO2-210ENST00000588216 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
TNPO2-210ENST00000588216 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
TNPO2-210ENST00000588216 CSRNP3Q8WYN3 585 aa19.15■□□□□ 0.66
TNPO2-210ENST00000588216 CFTRP13569 1480 aa19.12■□□□□ 0.65
TNPO2-210ENST00000588216 UBTFP17480 764 aaKnown RBP19.1■□□□□ 0.65
TNPO2-210ENST00000588216 CADPSQ9ULU8 1353 aa19.09■□□□□ 0.65
TNPO2-210ENST00000588216 NESP48681 1621 aa19.01■□□□□ 0.63
TNPO2-210ENST00000588216 RANGAP1P46060 587 aaPredicted RBP19■□□□□ 0.63
TNPO2-210ENST00000588216 CUX1P39880 1505 aa18.98■□□□□ 0.63
TNPO2-210ENST00000588216 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
TNPO2-210ENST00000588216 MYT1Q01538 1121 aa18.97■□□□□ 0.63
TNPO2-210ENST00000588216 EEA1Q15075 1411 aa18.96■□□□□ 0.63
TNPO2-210ENST00000588216 TTBK1Q5TCY1 1321 aaPredicted RBP18.91■□□□□ 0.62
TNPO2-210ENST00000588216 FANCD2Q9BXW9 1451 aa18.89■□□□□ 0.61
TNPO2-210ENST00000588216 BIVM-ERCC5R4GMW8 1640 aa18.88■□□□□ 0.61
TNPO2-210ENST00000588216 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
TNPO2-210ENST00000588216 CEP162Q5TB80 1403 aa18.86■□□□□ 0.61
TNPO2-210ENST00000588216 TRIM26Q12899 539 aaPredicted RBP18.86■□□□□ 0.61
TNPO2-210ENST00000588216 GOLGA3Q08378 1498 aa18.86■□□□□ 0.61
TNPO2-210ENST00000588216 TNIKQ9UKE5 1360 aa18.85■□□□□ 0.61
TNPO2-210ENST00000588216 RAPGEF2Q9Y4G8 1499 aa18.83■□□□□ 0.61
TNPO2-210ENST00000588216 CEP164Q9UPV0 1460 aa18.81■□□□□ 0.6
TNPO2-210ENST00000588216 PRDM2Q13029 1718 aa18.78■□□□□ 0.6
TNPO2-210ENST00000588216 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
TNPO2-210ENST00000588216 FGD5Q6ZNL6 1462 aa18.77■□□□□ 0.6
TNPO2-210ENST00000588216 CUX2O14529 1486 aa18.76■□□□□ 0.59
TNPO2-210ENST00000588216 ZEB1P37275 1124 aaPredicted RBP18.74■□□□□ 0.59
TNPO2-210ENST00000588216 RAD54L2Q9Y4B4 1467 aa18.72■□□□□ 0.59
TNPO2-210ENST00000588216 KIF21BO75037 1637 aa18.7■□□□□ 0.58
TNPO2-210ENST00000588216 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
TNPO2-210ENST00000588216 TOPBP1Q92547 1522 aa18.67■□□□□ 0.58
TNPO2-210ENST00000588216 CLIP1P30622 1438 aa18.67■□□□□ 0.58
TNPO2-210ENST00000588216 PDS5BQ9NTI5 1447 aa18.67■□□□□ 0.58
TNPO2-210ENST00000588216 PRXQ9BXM0 1461 aa18.66■□□□□ 0.58
TNPO2-210ENST00000588216 IGF1RP08069 1367 aa18.65■□□□□ 0.58
TNPO2-210ENST00000588216 POLA1P09884 1462 aaPredicted RBP18.63■□□□□ 0.57
TNPO2-210ENST00000588216 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
TNPO2-210ENST00000588216 DNMBPQ6XZF7 1577 aa18.62■□□□□ 0.57
TNPO2-210ENST00000588216 TDRD9Q8NDG6 1382 aaKnown RBP18.58■□□□□ 0.57
TNPO2-210ENST00000588216 CARMIL1Q5VZK9 1371 aa18.58■□□□□ 0.56
TNPO2-210ENST00000588216 KIF21AQ7Z4S6 1674 aa18.57■□□□□ 0.56
TNPO2-210ENST00000588216 ERICH3Q5RHP9 1530 aa18.53■□□□□ 0.56
TNPO2-210ENST00000588216 APLP2Q06481 763 aa18.5■□□□□ 0.55
TNPO2-210ENST00000588216 ABCA10Q8WWZ4 1543 aa18.49■□□□□ 0.55
TNPO2-210ENST00000588216 P3H3Q8IVL6 736 aa18.48■□□□□ 0.55
TNPO2-210ENST00000588216 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
TNPO2-210ENST00000588216 ACIN1Q9UKV3 1341 aaKnown RBP18.41■□□□□ 0.54
TNPO2-210ENST00000588216 ERCC6Q03468 1493 aa18.41■□□□□ 0.54
TNPO2-210ENST00000588216 ARAP1Q96P48 1450 aa18.41■□□□□ 0.54
TNPO2-210ENST00000588216 GAPVD1Q14C86 1478 aa18.38■□□□□ 0.53
TNPO2-210ENST00000588216 AQRO60306 1485 aaKnown RBP eCLIP18.38■□□□□ 0.534e-7■■■■□ 23
TNPO2-210ENST00000588216 MRC2Q9UBG0 1479 aa18.38■□□□□ 0.53
TNPO2-210ENST00000588216 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
TNPO2-210ENST00000588216 ARHGAP35Q9NRY4 1499 aa18.36■□□□□ 0.53
TNPO2-210ENST00000588216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.36■□□□□ 0.53
TNPO2-210ENST00000588216 KANK4Q5T7N3 995 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms