Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 FNBP4-204ENST00000525792 840 ntTSL 38.31□□□□□ -1.081e-7■■■□□ 15.1
SMNDC1O75940 MACF1-226ENST00000497964 4160 ntTSL 27.43□□□□□ -1.221e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-209ENST00000564678 2199 ntTSL 1 (best)7.13□□□□□ -1.277e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-206ENST00000563343 567 ntTSL 46.98□□□□□ -1.297e-11■■■□□ 15.1
SMNDC1O75940 RAB12-202ENST00000580987 504 ntTSL 56.94□□□□□ -1.31e-7■■■□□ 15.1
SMNDC1O75940 FNBP4-208ENST00000529156 344 ntTSL 36.54□□□□□ -1.361e-7■■■□□ 15.1
SMNDC1O75940 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.35□□□□□ -1.391e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-217ENST00000569429 562 ntTSL 46□□□□□ -1.457e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-207ENST00000563781 774 ntTSL 35.89□□□□□ -1.477e-11■■■□□ 15.1
SMNDC1O75940 MACF1-205ENST00000372925 14496 ntTSL 55.88□□□□□ -1.471e-7■■■□□ 15.1
SMNDC1O75940 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.95□□□□□ -1.621e-7■■■□□ 15.1
SMNDC1O75940 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.691e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-213ENST00000568358 751 ntTSL 54.34□□□□□ -1.717e-11■■■□□ 15.1
SMNDC1O75940 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.741e-7■■■□□ 15.1
SMNDC1O75940 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.68□□□□□ -1.821e-7■■■□□ 15.1
SMNDC1O75940 SLC6A8-208ENST00000467402 308 ntTSL 510.73□□□□□ -0.693e-9■■■□□ 15.1
SMNDC1O75940 DGCR8-206ENST00000485802 555 ntTSL 512.58□□□□□ -0.42e-6■■■□□ 15.1
SMNDC1O75940 SNORD116-11-201ENST00000383882 92 ntBASIC5.58□□□□□ -1.524e-21■■■□□ 15.1
SMNDC1O75940 RNF44-207ENST00000513029 1647 ntTSL 215.88■□□□□ 0.131e-6■■■□□ 15
SMNDC1O75940 RNF44-204ENST00000506378 848 ntTSL 215.49■□□□□ 0.071e-6■■■□□ 15
SMNDC1O75940 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.031e-6■■■□□ 15
SMNDC1O75940 RPS8-207ENST00000485390 1115 ntTSL 1 (best)18.98■□□□□ 0.633e-81■■■□□ 15
SMNDC1O75940 RPS8-204ENST00000470475 981 ntTSL 213.36□□□□□ -0.273e-81■■■□□ 15
SMNDC1O75940 RPS8-208ENST00000497035 694 ntTSL 313.09□□□□□ -0.313e-81■■■□□ 15
SMNDC1O75940 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.753e-81■■■□□ 15
SMNDC1O75940 RPS8-201ENST00000372209 685 ntTSL 2 BASIC9.49□□□□□ -0.893e-81■■■□□ 15
SMNDC1O75940 SNORD46-201ENST00000364043 104 ntBASIC7.43□□□□□ -1.223e-81■■■□□ 15
SMNDC1O75940 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.74■□□□□ 0.435e-6■■■□□ 15
SMNDC1O75940 ACTN4-207ENST00000495553 586 ntTSL 58.39□□□□□ -1.071e-7■■■□□ 15
SMNDC1O75940 DDX39B-217ENST00000474961 974 ntTSL 28.41□□□□□ -1.061e-28■■■□□ 15
SMNDC1O75940 DDX39B-221ENST00000484566 857 ntTSL 58.41□□□□□ -1.061e-28■■■□□ 15
SMNDC1O75940 DDX39B-216ENST00000462421 618 ntTSL 38.12□□□□□ -1.111e-28■■■□□ 15
SMNDC1O75940 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.572e-6■■■□□ 15
SMNDC1O75940 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.622e-6■■■□□ 15
SMNDC1O75940 KHSRP-206ENST00000595258 672 ntTSL 514.39□□□□□ -0.112e-6■■■□□ 15
SMNDC1O75940 KHSRP-207ENST00000595548 801 ntTSL 214.29□□□□□ -0.122e-6■■■□□ 15
SMNDC1O75940 KHSRP-204ENST00000595112 745 ntTSL 314.06□□□□□ -0.162e-6■■■□□ 15
SMNDC1O75940 KHSRP-210ENST00000599395 837 ntTSL 511.89□□□□□ -0.512e-6■■■□□ 15
SMNDC1O75940 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.889e-7■■■□□ 15
SMNDC1O75940 PRSS21-207ENST00000574813 873 ntTSL 316.85■□□□□ 0.299e-7■■■□□ 15
SMNDC1O75940 PRSS21-203ENST00000570594 809 ntTSL 316.72■□□□□ 0.279e-7■■■□□ 15
SMNDC1O75940 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.55■□□□□ 0.089e-7■■■□□ 15
SMNDC1O75940 PRSS21-204ENST00000570629 626 ntTSL 211.15□□□□□ -0.629e-7■■■□□ 15
SMNDC1O75940 MICALL2-212ENST00000487187 764 ntTSL 516.28■□□□□ 0.23e-7■■■□□ 15
SMNDC1O75940 HNRNPU-217ENST00000638952 5678 ntTSL 517.86■□□□□ 0.452e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.292e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-214ENST00000638475 2698 ntTSL 516.46■□□□□ 0.232e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.43■□□□□ 0.225e-6■■■□□ 14.9
SMNDC1O75940 HNRNPU-209ENST00000476241 4844 ntTSL 516.41■□□□□ 0.222e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.192e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.012e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-229ENST00000640440 871 ntTSL 312.97□□□□□ -0.332e-9■■■□□ 14.9
SMNDC1O75940 HNRNPU-224ENST00000640056 2045 ntTSL 510.66□□□□□ -0.75e-6■■■□□ 14.9
SMNDC1O75940 IARS-211ENST00000490438 887 ntTSL 212.78□□□□□ -0.368e-19■■■□□ 14.9
SMNDC1O75940 IARS-203ENST00000395554 1103 ntTSL 511.98□□□□□ -0.498e-19■■■□□ 14.9
SMNDC1O75940 IARS-204ENST00000430417 414 ntTSL 39.91□□□□□ -0.828e-19■■■□□ 14.9
SMNDC1O75940 SNORA84-201ENST00000459229 133 ntBASIC3.58□□□□□ -1.848e-19■■■□□ 14.9
SMNDC1O75940 MIR3651-201ENST00000630427 90 ntBASIC3□□□□□ -1.938e-19■■■□□ 14.9
SMNDC1O75940 SNRNP70-207ENST00000598984 547 ntTSL 516.6■□□□□ 0.253e-17■■■□□ 14.9
SMNDC1O75940 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.478e-9■■■□□ 14.9
SMNDC1O75940 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.488e-9■■■□□ 14.9
SMNDC1O75940 RNF44-208ENST00000515051 596 ntTSL 411.11□□□□□ -0.632e-6■■■□□ 14.9
SMNDC1O75940 DDX3X-210ENST00000615313 568 ntTSL 417.33■□□□□ 0.365e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-206ENST00000542215 1592 ntTSL 216.34■□□□□ 0.215e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-208ENST00000611546 442 ntTSL 515.11■□□□□ 0.015e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-213ENST00000622198 409 ntTSL 415.11■□□□□ 0.015e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.135e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC11.02□□□□□ -0.655e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC10.76□□□□□ -0.695e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-221ENST00000630858 3181 ntTSL 510.74□□□□□ -0.695e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-219ENST00000630255 3289 ntTSL 510.6□□□□□ -0.715e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC10.33□□□□□ -0.765e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.765e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)10.32□□□□□ -0.765e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-218ENST00000629785 3457 ntTSL 510.29□□□□□ -0.765e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-220ENST00000630370 3120 ntTSL 59.91□□□□□ -0.825e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-222ENST00000631641 583 ntTSL 37.45□□□□□ -1.225e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC7.45□□□□□ -1.225e-14■■■□□ 14.9
SMNDC1O75940 DDX3X-211ENST00000615742 485 ntTSL 47.45□□□□□ -1.225e-14■■■□□ 14.9
SMNDC1O75940 GNL3-209ENST00000484022 668 ntTSL 25.49□□□□□ -1.537e-15■■■□□ 14.9
SMNDC1O75940 ATP5B-203ENST00000547808 705 ntTSL 517.15■□□□□ 0.342e-13■■■□□ 14.9
SMNDC1O75940 ATP5B-207ENST00000551020 856 ntTSL 316.86■□□□□ 0.292e-13■■■□□ 14.9
SMNDC1O75940 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.052e-13■■■□□ 14.9
SMNDC1O75940 ATP5B-204ENST00000548474 449 ntTSL 36.35□□□□□ -1.392e-13■■■□□ 14.9
SMNDC1O75940 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.42■□□□□ 0.71e-7■■■□□ 14.9
SMNDC1O75940 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.661e-7■■■□□ 14.9
SMNDC1O75940 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.94■□□□□ 0.461e-7■■■□□ 14.9
SMNDC1O75940 PTTG1IP-205ENST00000474737 580 ntTSL 314.17□□□□□ -0.146e-8■■■□□ 14.9
SMNDC1O75940 PTTG1IP-207ENST00000494690 612 ntTSL 510.95□□□□□ -0.666e-8■■■□□ 14.9
SMNDC1O75940 DGCR8-208ENST00000495351 508 ntTSL 412.58□□□□□ -0.42e-6■■■□□ 14.9
SMNDC1O75940 RPL3-207ENST00000459859 447 ntTSL 317.83■□□□□ 0.441e-22■■■□□ 14.9
SMNDC1O75940 RPL3-218ENST00000498462 669 ntTSL 316.94■□□□□ 0.31e-22■■■□□ 14.9
SMNDC1O75940 RPL3-208ENST00000460589 630 ntTSL 215.38■□□□□ 0.051e-22■■■□□ 14.9
SMNDC1O75940 RPL3-205ENST00000427905 782 ntTSL 512.69□□□□□ -0.381e-22■■■□□ 14.9
SMNDC1O75940 RPL3-209ENST00000461967 767 ntTSL 211.89□□□□□ -0.511e-22■■■□□ 14.9
SMNDC1O75940 RPL3-217ENST00000484615 827 ntTSL 211.51□□□□□ -0.571e-22■■■□□ 14.9
SMNDC1O75940 RPL3-204ENST00000420536 711 ntTSL 58.29□□□□□ -1.081e-22■■■□□ 14.9
SMNDC1O75940 RBCK1-214ENST00000621487 473 ntTSL 214.57□□□□□ -0.084e-14■■■□□ 14.9
SMNDC1O75940 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)18.33■□□□□ 0.526e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-201ENST00000323981 2540 ntTSL 214.49□□□□□ -0.096e-13■■■□□ 14.8
Retrieved 100 of 11,362 protein–RNA pairs in 185.8 ms