RNA–Protein interactions for RNA: ENST00000619396.4

KHSRP-213, Transcript of KH-type splicing regulatory protein, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene KHSRP, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KHSRP-213ENST00000619396 NISCHQ9Y2I1 1504 aa63.72■■■■■ 7.79
KHSRP-213ENST00000619396 CCDC180Q9P1Z9 1646 aa54.61■■■■■ 6.33
KHSRP-213ENST00000619396 ZCCHC6Q5VYS8 1495 aaKnown RBP53.75■■■■■ 6.19
KHSRP-213ENST00000619396 SHROOM4Q9ULL8 1493 aa53.65■■■■■ 6.18
KHSRP-213ENST00000619396 DCAF8L2P0C7V8 631 aa52.91■■■■■ 6.06
KHSRP-213ENST00000619396 DCAF1Q9Y4B6 1507 aa52.3■■■■■ 5.96
KHSRP-213ENST00000619396 SUPT5HO00267 1087 aaKnown RBP52.2■■■■■ 5.95
KHSRP-213ENST00000619396 ABCC9O60706 1549 aa51.19■■■■■ 5.78
KHSRP-213ENST00000619396 MYO15BQ96JP2 1530 aa51.09■■■■■ 5.77
KHSRP-213ENST00000619396 SCRIBQ14160 1630 aa51.01■■■■■ 5.76
KHSRP-213ENST00000619396 CHIC1Q5VXU3 224 aa50.7■■■■■ 5.71
KHSRP-213ENST00000619396 NACADO15069 1562 aa50.63■■■■■ 5.7
KHSRP-213ENST00000619396 RSF1Q96T23 1441 aaPredicted RBP50.09■■■■■ 5.61
KHSRP-213ENST00000619396 RB1CC1Q8TDY2 1594 aa49.97■■■■■ 5.59
KHSRP-213ENST00000619396 CECR2Q9BXF3 1484 aa49.76■■■■■ 5.56
KHSRP-213ENST00000619396 MROH2BQ7Z745 1585 aa49.51■■■■■ 5.52
KHSRP-213ENST00000619396 UNC13AQ9UPW8 1703 aa49.33■■■■■ 5.49
KHSRP-213ENST00000619396 HRCP23327 699 aa49.26■■■■■ 5.48
KHSRP-213ENST00000619396 WIZO95785 1651 aa49.23■■■■■ 5.47
KHSRP-213ENST00000619396 LOC105371045A0A1W2PR82 267 aa49.07■■■■■ 5.45
KHSRP-213ENST00000619396 PCGF6Q9BYE7 350 aa49.05■■■■■ 5.44
KHSRP-213ENST00000619396 BAZ1AQ9NRL2 1556 aaPredicted RBP48.99■■■■■ 5.43
KHSRP-213ENST00000619396 PABPN1Q86U42 306 aaKnown RBP eCLIP48.75■■■■■ 5.45e-7■□□□□ 8.6
KHSRP-213ENST00000619396 SMARCA4P51532 1647 aa48.72■■■■■ 5.39
KHSRP-213ENST00000619396 BICRAQ9NZM4 1560 aa48.7■■■■■ 5.39
KHSRP-213ENST00000619396 TRIM41Q8WV44 630 aa48.68■■■■■ 5.38
KHSRP-213ENST00000619396 TOP2AP11388 1531 aaKnown RBP48.42■■■■■ 5.34
KHSRP-213ENST00000619396 FAM9AQ8IZU1 332 aaPredicted RBP48.26■■■■■ 5.32
KHSRP-213ENST00000619396 TRIM26Q12899 539 aaPredicted RBP48.24■■■■■ 5.31
KHSRP-213ENST00000619396 EIF4G1Q04637 1599 aaKnown RBP48.24■■■■■ 5.31
KHSRP-213ENST00000619396 CCDC88BA6NC98 1476 aa48.19■■■■■ 5.3
KHSRP-213ENST00000619396 SMARCA2P51531 1590 aa48.15■■■■■ 5.3
KHSRP-213ENST00000619396 PPARGC1BQ86YN6 1023 aaKnown RBP48.07■■■■■ 5.29
KHSRP-213ENST00000619396 EHMT2Q96KQ7 1210 aa47.87■■■■■ 5.25
KHSRP-213ENST00000619396 PEG3Q9GZU2 1588 aa47.83■■■■■ 5.25
KHSRP-213ENST00000619396 ABCC8Q09428 1581 aa47.81■■■■■ 5.24
KHSRP-213ENST00000619396 ATAD2BQ9ULI0 1458 aa47.63■■■■■ 5.22
KHSRP-213ENST00000619396 BAZ1BQ9UIG0 1483 aaKnown RBP47.44■■■■■ 5.19
KHSRP-213ENST00000619396 ZEB1P37275 1124 aaPredicted RBP47.26■■■■■ 5.16
KHSRP-213ENST00000619396 SOGA1O94964 1423 aa47.17■■■■■ 5.14
KHSRP-213ENST00000619396 WRNQ14191 1432 aaPredicted RBP eCLIP47.06■■■■■ 5.12
KHSRP-213ENST00000619396 RUSC2Q8N2Y8 1516 aa47.01■■■■■ 5.12
KHSRP-213ENST00000619396 SYNJ1O43426 1573 aa46.93■■■■■ 5.1
KHSRP-213ENST00000619396 NCAPD3P42695 1498 aa46.83■■■■■ 5.09
KHSRP-213ENST00000619396 HMGXB3Q12766 1538 aa46.79■■■■■ 5.08
KHSRP-213ENST00000619396 CSRNP3Q8WYN3 585 aa46.77■■■■■ 5.08
KHSRP-213ENST00000619396 EEA1Q15075 1411 aa46.74■■■■■ 5.07
KHSRP-213ENST00000619396 CEP162Q5TB80 1403 aa46.54■■■■■ 5.04
KHSRP-213ENST00000619396 TNIKQ9UKE5 1360 aa46.52■■■■■ 5.04
KHSRP-213ENST00000619396 UBTFP17480 764 aaKnown RBP46.48■■■■■ 5.03
KHSRP-213ENST00000619396 GOLGA3Q08378 1498 aa46.41■■■■■ 5.02
KHSRP-213ENST00000619396 TOP2BQ02880 1626 aa46.41■■■■■ 5.02
KHSRP-213ENST00000619396 BIVM-ERCC5R4GMW8 1640 aa46.28■■■■■ 5
KHSRP-213ENST00000619396 CFTRP13569 1480 aa46.24■■■■■ 4.99
KHSRP-213ENST00000619396 CEP164Q9UPV0 1460 aa46.23■■■■■ 4.99
KHSRP-213ENST00000619396 KIF21BO75037 1637 aa46.22■■■■■ 4.99
KHSRP-213ENST00000619396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP46.18■■■■■ 4.98
KHSRP-213ENST00000619396 CUX1P39880 1505 aa46.15■■■■■ 4.98
KHSRP-213ENST00000619396 CC2D2AQ9P2K1 1620 aa46.14■■■■■ 4.98
KHSRP-213ENST00000619396 TTBK1Q5TCY1 1321 aaPredicted RBP46.1■■■■■ 4.97
KHSRP-213ENST00000619396 CCER1Q8TC90 406 aaPredicted RBP46.07■■■■■ 4.96
KHSRP-213ENST00000619396 RAPGEF2Q9Y4G8 1499 aa46.06■■■■■ 4.96
KHSRP-213ENST00000619396 PRDM2Q13029 1718 aa45.93■■■■■ 4.94
KHSRP-213ENST00000619396 CADPSQ9ULU8 1353 aa45.86■■■■■ 4.93
KHSRP-213ENST00000619396 CLIP1P30622 1438 aa45.84■■■■■ 4.93
KHSRP-213ENST00000619396 RANGAP1P46060 587 aaPredicted RBP45.79■■■■■ 4.92
KHSRP-213ENST00000619396 PRXQ9BXM0 1461 aa45.7■■■■■ 4.91
KHSRP-213ENST00000619396 KIF27Q86VH2 1401 aa45.66■■■■■ 4.9
KHSRP-213ENST00000619396 ERICH3Q5RHP9 1530 aa45.6■■■■■ 4.89
KHSRP-213ENST00000619396 VPS8Q8N3P4 1428 aa45.54■■■■■ 4.88
KHSRP-213ENST00000619396 FANCD2Q9BXW9 1451 aa45.44■■■■■ 4.86
KHSRP-213ENST00000619396 FGD5Q6ZNL6 1462 aa45.43■■■■■ 4.86
KHSRP-213ENST00000619396 CUX2O14529 1486 aa45.42■■■■■ 4.86
KHSRP-213ENST00000619396 NESP48681 1621 aa45.41■■■■■ 4.86
KHSRP-213ENST00000619396 SCAF1Q9H7N4 1312 aaKnown RBP45.36■■■■■ 4.85
KHSRP-213ENST00000619396 IGF1RP08069 1367 aa45.27■■■■■ 4.84
KHSRP-213ENST00000619396 ARAP1Q96P48 1450 aa45.26■■■■■ 4.84
KHSRP-213ENST00000619396 DIEXFQ68CQ4 756 aaKnown RBP45.25■■■■■ 4.83
KHSRP-213ENST00000619396 APLP2Q06481 763 aa45.2■■■■■ 4.83
KHSRP-213ENST00000619396 DNAJC5BQ9UF47 199 aa45.2■■■■■ 4.83
KHSRP-213ENST00000619396 DNMBPQ6XZF7 1577 aa45.12■■■■■ 4.81
KHSRP-213ENST00000619396 TOPBP1Q92547 1522 aa45.08■■■■■ 4.81
KHSRP-213ENST00000619396 RAD54L2Q9Y4B4 1467 aa45.08■■■■■ 4.81
KHSRP-213ENST00000619396 HNRNPUL2Q1KMD3 747 aaKnown RBP45.07■■■■■ 4.81
KHSRP-213ENST00000619396 CARMIL1Q5VZK9 1371 aa45.04■■■■■ 4.8
KHSRP-213ENST00000619396 ARHGAP35Q9NRY4 1499 aa45.01■■■■■ 4.8
KHSRP-213ENST00000619396 POLA1P09884 1462 aaPredicted RBP45■■■■■ 4.79
KHSRP-213ENST00000619396 LAMC3Q9Y6N6 1575 aa44.98■■■■■ 4.79
KHSRP-213ENST00000619396 ACIN1Q9UKV3 1341 aaKnown RBP44.97■■■■■ 4.79
KHSRP-213ENST00000619396 ZNF316A6NFI3 1004 aaPredicted RBP44.97■■■■■ 4.79
KHSRP-213ENST00000619396 KANK4Q5T7N3 995 aaPredicted RBP44.88■■■■■ 4.78
KHSRP-213ENST00000619396 ABCA10Q8WWZ4 1543 aa44.87■■■■■ 4.77
KHSRP-213ENST00000619396 URB2Q14146 1524 aaKnown RBP44.87■■■■■ 4.77
KHSRP-213ENST00000619396 NEUROD1Q13562 356 aa44.86■■■■■ 4.77
KHSRP-213ENST00000619396 KIF21AQ7Z4S6 1674 aa44.67■■■■■ 4.74
KHSRP-213ENST00000619396 PDS5BQ9NTI5 1447 aa44.67■■■■■ 4.74
KHSRP-213ENST00000619396 CENPBP07199 599 aaPredicted RBP44.66■■■■■ 4.74
KHSRP-213ENST00000619396 WDR97A6NE52 1622 aa44.61■■■■■ 4.73
KHSRP-213ENST00000619396 TDRD9Q8NDG6 1382 aaKnown RBP44.54■■■■■ 4.72
KHSRP-213ENST00000619396 PELP1Q8IZL8 1130 aaKnown RBP44.54■■■■■ 4.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms