RNA–Protein interactions for RNA: ENST00000495553.1

ACTN4-207, Transcript of actinin alpha 4, humanhuman

TSL 5

Gene ACTN4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-207ENST00000495553 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
ACTN4-207ENST00000495553 CCDC180Q9P1Z9 1646 aa19.71■□□□□ 0.75
ACTN4-207ENST00000495553 ABCC9O60706 1549 aa19.35■□□□□ 0.69
ACTN4-207ENST00000495553 DCAF8L2P0C7V8 631 aa18.79■□□□□ 0.6
ACTN4-207ENST00000495553 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
ACTN4-207ENST00000495553 NACADO15069 1562 aa18.59■□□□□ 0.57
ACTN4-207ENST00000495553 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
ACTN4-207ENST00000495553 MYO15BQ96JP2 1530 aa18.5■□□□□ 0.55
ACTN4-207ENST00000495553 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
ACTN4-207ENST00000495553 PABPN1Q86U42 306 aaKnown RBP eCLIP18.16■□□□□ 0.5
ACTN4-207ENST00000495553 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
ACTN4-207ENST00000495553 UNC13AQ9UPW8 1703 aa18.01■□□□□ 0.47
ACTN4-207ENST00000495553 BICRAQ9NZM4 1560 aa17.98■□□□□ 0.47
ACTN4-207ENST00000495553 SHROOM4Q9ULL8 1493 aa17.85■□□□□ 0.45
ACTN4-207ENST00000495553 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
ACTN4-207ENST00000495553 EIF4G1Q04637 1599 aaKnown RBP17.54■□□□□ 0.4
ACTN4-207ENST00000495553 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
ACTN4-207ENST00000495553 CECR2Q9BXF3 1484 aa17.39■□□□□ 0.37
ACTN4-207ENST00000495553 BAZ1AQ9NRL2 1556 aaPredicted RBP17.3■□□□□ 0.36
ACTN4-207ENST00000495553 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
ACTN4-207ENST00000495553 ATAD2BQ9ULI0 1458 aa17.22■□□□□ 0.35
ACTN4-207ENST00000495553 MROH2BQ7Z745 1585 aa17.2■□□□□ 0.34
ACTN4-207ENST00000495553 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
ACTN4-207ENST00000495553 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
ACTN4-207ENST00000495553 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
ACTN4-207ENST00000495553 PEG3Q9GZU2 1588 aa17.08■□□□□ 0.32
ACTN4-207ENST00000495553 RSF1Q96T23 1441 aaPredicted RBP17.08■□□□□ 0.32
ACTN4-207ENST00000495553 HMGXB3Q12766 1538 aa17.06■□□□□ 0.32
ACTN4-207ENST00000495553 WIZO95785 1651 aa16.97■□□□□ 0.31
ACTN4-207ENST00000495553 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
ACTN4-207ENST00000495553 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
ACTN4-207ENST00000495553 NESP48681 1621 aa16.74■□□□□ 0.27
ACTN4-207ENST00000495553 CADPSQ9ULU8 1353 aa16.73■□□□□ 0.27
ACTN4-207ENST00000495553 ERCC6Q03468 1493 aa16.71■□□□□ 0.27
ACTN4-207ENST00000495553 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
ACTN4-207ENST00000495553 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
ACTN4-207ENST00000495553 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
ACTN4-207ENST00000495553 CFTRP13569 1480 aa16.61■□□□□ 0.25
ACTN4-207ENST00000495553 FANCD2Q9BXW9 1451 aa16.52■□□□□ 0.23
ACTN4-207ENST00000495553 CEP164Q9UPV0 1460 aa16.49■□□□□ 0.23
ACTN4-207ENST00000495553 CUX2O14529 1486 aa16.45■□□□□ 0.22
ACTN4-207ENST00000495553 KIF21AQ7Z4S6 1674 aa16.44■□□□□ 0.22
ACTN4-207ENST00000495553 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
ACTN4-207ENST00000495553 THOC2Q8NI27 1593 aaKnown RBP16.39■□□□□ 0.21
ACTN4-207ENST00000495553 WDR62O43379 1518 aa16.34■□□□□ 0.21
ACTN4-207ENST00000495553 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
ACTN4-207ENST00000495553 URB2Q14146 1524 aaKnown RBP16.31■□□□□ 0.2
ACTN4-207ENST00000495553 ABCC8Q09428 1581 aa16.27■□□□□ 0.2
ACTN4-207ENST00000495553 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
ACTN4-207ENST00000495553 DNMBPQ6XZF7 1577 aa16.2■□□□□ 0.18
ACTN4-207ENST00000495553 IFT140Q96RY7 1462 aa16.15■□□□□ 0.18
ACTN4-207ENST00000495553 CUX1P39880 1505 aa16.14■□□□□ 0.17
ACTN4-207ENST00000495553 WRNQ14191 1432 aaPredicted RBP eCLIP16.11■□□□□ 0.17
ACTN4-207ENST00000495553 POLA1P09884 1462 aaPredicted RBP16.11■□□□□ 0.17
ACTN4-207ENST00000495553 SOGA1O94964 1423 aa16.1■□□□□ 0.17
ACTN4-207ENST00000495553 FGD5Q6ZNL6 1462 aa16.09■□□□□ 0.17
ACTN4-207ENST00000495553 RAD54L2Q9Y4B4 1467 aa16.05■□□□□ 0.16
ACTN4-207ENST00000495553 ZNF608Q9ULD9 1512 aaPredicted RBP16.04■□□□□ 0.16
ACTN4-207ENST00000495553 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
ACTN4-207ENST00000495553 TARBP1Q13395 1621 aaKnown RBP16■□□□□ 0.15
ACTN4-207ENST00000495553 AQRO60306 1485 aaKnown RBP eCLIP15.99■□□□□ 0.154e-9■■■■■ 59.2
ACTN4-207ENST00000495553 TOP2BQ02880 1626 aa15.99■□□□□ 0.15
ACTN4-207ENST00000495553 SYNJ1O43426 1573 aa15.99■□□□□ 0.15
ACTN4-207ENST00000495553 BIVM-ERCC5R4GMW8 1640 aa15.95■□□□□ 0.14
ACTN4-207ENST00000495553 TRIM41Q8WV44 630 aa15.93■□□□□ 0.14
ACTN4-207ENST00000495553 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
ACTN4-207ENST00000495553 EIF4G3O43432 1585 aaKnown RBP15.92■□□□□ 0.14
ACTN4-207ENST00000495553 CHIC1Q5VXU3 224 aa15.91■□□□□ 0.14
ACTN4-207ENST00000495553 DNAJC5Q9H3Z4 198 aa15.9■□□□□ 0.14
ACTN4-207ENST00000495553 GAPVD1Q14C86 1478 aa15.89■□□□□ 0.13
ACTN4-207ENST00000495553 WDR97A6NE52 1622 aa15.88■□□□□ 0.13
ACTN4-207ENST00000495553 FBLN2P98095 1184 aa15.88■□□□□ 0.13
ACTN4-207ENST00000495553 GRIN2BQ13224 1484 aa15.88■□□□□ 0.13
ACTN4-207ENST00000495553 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
ACTN4-207ENST00000495553 CHMP7Q8WUX9 453 aaPredicted RBP15.83■□□□□ 0.12
ACTN4-207ENST00000495553 SNAPC4Q5SXM2 1469 aa15.83■□□□□ 0.12
ACTN4-207ENST00000495553 MAGI1Q96QZ7 1491 aaPredicted RBP15.8■□□□□ 0.12
ACTN4-207ENST00000495553 ABCA5Q8WWZ7 1642 aa15.79■□□□□ 0.12
ACTN4-207ENST00000495553 KIF27Q86VH2 1401 aa15.79■□□□□ 0.12
ACTN4-207ENST00000495553 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
ACTN4-207ENST00000495553 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
ACTN4-207ENST00000495553 FHAD1B1AJZ9 1412 aa15.72■□□□□ 0.11
ACTN4-207ENST00000495553 IGF1RP08069 1367 aa15.72■□□□□ 0.11
ACTN4-207ENST00000495553 PBRM1Q86U86 1689 aa15.71■□□□□ 0.11
ACTN4-207ENST00000495553 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
ACTN4-207ENST00000495553 CHD1O14646 1710 aa15.65■□□□□ 0.1
ACTN4-207ENST00000495553 GRIN2AQ12879 1464 aa15.65■□□□□ 0.1
ACTN4-207ENST00000495553 CARMIL1Q5VZK9 1371 aa15.63■□□□□ 0.09
ACTN4-207ENST00000495553 EEA1Q15075 1411 aa15.63■□□□□ 0.09
ACTN4-207ENST00000495553 RUSC2Q8N2Y8 1516 aa15.62■□□□□ 0.09
ACTN4-207ENST00000495553 NUP160Q12769 1436 aa15.58■□□□□ 0.08
ACTN4-207ENST00000495553 CUL7Q14999 1698 aa15.57■□□□□ 0.08
ACTN4-207ENST00000495553 CLASP1Q7Z460 1538 aa15.55■□□□□ 0.08
ACTN4-207ENST00000495553 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
ACTN4-207ENST00000495553 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
ACTN4-207ENST00000495553 CEP170Q5SW79 1584 aa15.53■□□□□ 0.08
ACTN4-207ENST00000495553 RAPGEF2Q9Y4G8 1499 aa15.52■□□□□ 0.08
ACTN4-207ENST00000495553 ARHGEF11O15085 1522 aa15.51■□□□□ 0.07
ACTN4-207ENST00000495553 JPH4Q96JJ6 628 aa15.5■□□□□ 0.07
ACTN4-207ENST00000495553 CYB5RLQ6IPT4 315 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms