RNA–Protein interactions for RNA: ENST00000640440.1

HNRNPU-229, Transcript of heterogeneous nuclear ribonucleoprotein U, humanhuman

TSL 3

Gene HNRNPU, Length 871 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPU-229ENST00000640440 NISCHQ9Y2I1 1504 aa35.68■■■■□ 3.3
HNRNPU-229ENST00000640440 CCDC180Q9P1Z9 1646 aa31.95■■■□□ 2.71
HNRNPU-229ENST00000640440 ABCC9O60706 1549 aa31.6■■■□□ 2.65
HNRNPU-229ENST00000640440 RB1CC1Q8TDY2 1594 aa30.22■■■□□ 2.43
HNRNPU-229ENST00000640440 NACADO15069 1562 aa30.08■■■□□ 2.41
HNRNPU-229ENST00000640440 DCAF8L2P0C7V8 631 aa29.96■■■□□ 2.39
HNRNPU-229ENST00000640440 MYO15BQ96JP2 1530 aa29.74■■■□□ 2.35
HNRNPU-229ENST00000640440 UNC13AQ9UPW8 1703 aa29.66■■■□□ 2.34
HNRNPU-229ENST00000640440 ZCCHC6Q5VYS8 1495 aaKnown RBP29.66■■■□□ 2.34
HNRNPU-229ENST00000640440 DCAF1Q9Y4B6 1507 aa29.48■■■□□ 2.31
HNRNPU-229ENST00000640440 PABPN1Q86U42 306 aaKnown RBP eCLIP29.44■■■□□ 2.3
HNRNPU-229ENST00000640440 BICRAQ9NZM4 1560 aa29.34■■■□□ 2.29
HNRNPU-229ENST00000640440 DNAJC5BQ9UF47 199 aa29.31■■■□□ 2.28
HNRNPU-229ENST00000640440 SCRIBQ14160 1630 aa29.15■■■□□ 2.26
HNRNPU-229ENST00000640440 SHROOM4Q9ULL8 1493 aa28.93■■■□□ 2.22
HNRNPU-229ENST00000640440 EIF4G1Q04637 1599 aaKnown RBP28.59■■■□□ 2.17
HNRNPU-229ENST00000640440 CC2D2AQ9P2K1 1620 aa28.59■■■□□ 2.17
HNRNPU-229ENST00000640440 CECR2Q9BXF3 1484 aa28.42■■■□□ 2.14
HNRNPU-229ENST00000640440 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
HNRNPU-229ENST00000640440 NCAPD3P42695 1498 aa27.72■■■□□ 2.03
HNRNPU-229ENST00000640440 ATAD2BQ9ULI0 1458 aa27.71■■■□□ 2.03
HNRNPU-229ENST00000640440 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
HNRNPU-229ENST00000640440 SMARCA2P51531 1590 aa27.67■■■□□ 2.02
HNRNPU-229ENST00000640440 HMGXB3Q12766 1538 aa27.6■■■□□ 2.01
HNRNPU-229ENST00000640440 MROH2BQ7Z745 1585 aa27.51■■□□□ 1.99
HNRNPU-229ENST00000640440 PEG3Q9GZU2 1588 aa27.51■■□□□ 1.99
HNRNPU-229ENST00000640440 BAZ1BQ9UIG0 1483 aaKnown RBP27.49■■□□□ 1.99
HNRNPU-229ENST00000640440 ERCC6Q03468 1493 aa27.27■■□□□ 1.96
HNRNPU-229ENST00000640440 WIZO95785 1651 aa27.24■■□□□ 1.95
HNRNPU-229ENST00000640440 NESP48681 1621 aa27.24■■□□□ 1.95
HNRNPU-229ENST00000640440 LAMC3Q9Y6N6 1575 aa27.09■■□□□ 1.93
HNRNPU-229ENST00000640440 CUX2O14529 1486 aa27.09■■□□□ 1.93
HNRNPU-229ENST00000640440 RSF1Q96T23 1441 aaPredicted RBP27.02■■□□□ 1.92
HNRNPU-229ENST00000640440 KIF21AQ7Z4S6 1674 aa26.98■■□□□ 1.91
HNRNPU-229ENST00000640440 THOC2Q8NI27 1593 aaKnown RBP26.94■■□□□ 1.9
HNRNPU-229ENST00000640440 TOP2AP11388 1531 aaKnown RBP26.9■■□□□ 1.9
HNRNPU-229ENST00000640440 PDS5BQ9NTI5 1447 aa26.9■■□□□ 1.9
HNRNPU-229ENST00000640440 CADPSQ9ULU8 1353 aa26.89■■□□□ 1.9
HNRNPU-229ENST00000640440 MRC2Q9UBG0 1479 aa26.68■■□□□ 1.86
HNRNPU-229ENST00000640440 DNAJC5Q9H3Z4 198 aa26.67■■□□□ 1.86
HNRNPU-229ENST00000640440 CFTRP13569 1480 aa26.67■■□□□ 1.86
HNRNPU-229ENST00000640440 FANCD2Q9BXW9 1451 aa26.63■■□□□ 1.85
HNRNPU-229ENST00000640440 CEP164Q9UPV0 1460 aa26.63■■□□□ 1.85
HNRNPU-229ENST00000640440 WDR62O43379 1518 aa26.61■■□□□ 1.85
HNRNPU-229ENST00000640440 PRDM2Q13029 1718 aa26.59■■□□□ 1.85
HNRNPU-229ENST00000640440 CCDC88BA6NC98 1476 aa26.55■■□□□ 1.84
HNRNPU-229ENST00000640440 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
HNRNPU-229ENST00000640440 TOPBP1Q92547 1522 aa26.17■■□□□ 1.78
HNRNPU-229ENST00000640440 DNMBPQ6XZF7 1577 aa26.12■■□□□ 1.77
HNRNPU-229ENST00000640440 ABCC8Q09428 1581 aa26.1■■□□□ 1.77
HNRNPU-229ENST00000640440 IFT140Q96RY7 1462 aa26.08■■□□□ 1.77
HNRNPU-229ENST00000640440 SUPT5HO00267 1087 aaKnown RBP26.07■■□□□ 1.76
HNRNPU-229ENST00000640440 ZNF608Q9ULD9 1512 aaPredicted RBP26.02■■□□□ 1.76
HNRNPU-229ENST00000640440 EIF4G3O43432 1585 aaKnown RBP25.94■■□□□ 1.74
HNRNPU-229ENST00000640440 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
HNRNPU-229ENST00000640440 POLA1P09884 1462 aaPredicted RBP25.91■■□□□ 1.74
HNRNPU-229ENST00000640440 OSCARQ8IYS5 282 aa25.86■■□□□ 1.73
HNRNPU-229ENST00000640440 CUX1P39880 1505 aa25.84■■□□□ 1.73
HNRNPU-229ENST00000640440 RAD54L2Q9Y4B4 1467 aa25.82■■□□□ 1.72
HNRNPU-229ENST00000640440 FGD5Q6ZNL6 1462 aa25.81■■□□□ 1.72
HNRNPU-229ENST00000640440 AQRO60306 1485 aaKnown RBP eCLIP25.8■■□□□ 1.721e-7■■□□□ 12.2
HNRNPU-229ENST00000640440 SOGA1O94964 1423 aa25.78■■□□□ 1.72
HNRNPU-229ENST00000640440 CHD1O14646 1710 aa25.74■■□□□ 1.71
HNRNPU-229ENST00000640440 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
HNRNPU-229ENST00000640440 WDR97A6NE52 1622 aa25.68■■□□□ 1.7
HNRNPU-229ENST00000640440 TRIM41Q8WV44 630 aa25.68■■□□□ 1.7
HNRNPU-229ENST00000640440 RIMBP3CA6NJZ7 1639 aa25.59■■□□□ 1.69
HNRNPU-229ENST00000640440 RIMBP3BA6NNM3 1639 aa25.59■■□□□ 1.69
HNRNPU-229ENST00000640440 RIMBP3Q9UFD9 1639 aa25.59■■□□□ 1.69
HNRNPU-229ENST00000640440 SNAPC4Q5SXM2 1469 aa25.58■■□□□ 1.69
HNRNPU-229ENST00000640440 PBRM1Q86U86 1689 aa25.56■■□□□ 1.68
HNRNPU-229ENST00000640440 FBLN2P98095 1184 aa25.56■■□□□ 1.68
HNRNPU-229ENST00000640440 BIVM-ERCC5R4GMW8 1640 aa25.54■■□□□ 1.68
HNRNPU-229ENST00000640440 GRIN2BQ13224 1484 aa25.53■■□□□ 1.68
HNRNPU-229ENST00000640440 MAGI1Q96QZ7 1491 aaPredicted RBP25.52■■□□□ 1.68
HNRNPU-229ENST00000640440 ABCA10Q8WWZ4 1543 aa25.52■■□□□ 1.68
HNRNPU-229ENST00000640440 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
HNRNPU-229ENST00000640440 TOP2BQ02880 1626 aa25.52■■□□□ 1.68
HNRNPU-229ENST00000640440 AEBP2Q6ZN18 517 aaPredicted RBP25.51■■□□□ 1.67
HNRNPU-229ENST00000640440 ARHGEF11O15085 1522 aa25.51■■□□□ 1.67
HNRNPU-229ENST00000640440 WRNQ14191 1432 aaPredicted RBP eCLIP25.5■■□□□ 1.67
HNRNPU-229ENST00000640440 ABCA5Q8WWZ7 1642 aa25.49■■□□□ 1.67
HNRNPU-229ENST00000640440 GAPVD1Q14C86 1478 aa25.49■■□□□ 1.67
HNRNPU-229ENST00000640440 SYNJ2O15056 1496 aa25.41■■□□□ 1.66
HNRNPU-229ENST00000640440 CHMP7Q8WUX9 453 aaPredicted RBP25.41■■□□□ 1.66
HNRNPU-229ENST00000640440 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
HNRNPU-229ENST00000640440 ADAMTS12P58397 1594 aa25.29■■□□□ 1.64
HNRNPU-229ENST00000640440 ARAP1Q96P48 1450 aa25.28■■□□□ 1.64
HNRNPU-229ENST00000640440 CYB5RLQ6IPT4 315 aa25.25■■□□□ 1.63
HNRNPU-229ENST00000640440 GRIN2AQ12879 1464 aa25.22■■□□□ 1.63
HNRNPU-229ENST00000640440 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
HNRNPU-229ENST00000640440 FHAD1B1AJZ9 1412 aa25.17■■□□□ 1.62
HNRNPU-229ENST00000640440 CEP170Q5SW79 1584 aa25.14■■□□□ 1.62
HNRNPU-229ENST00000640440 NUP160Q12769 1436 aa25.11■■□□□ 1.61
HNRNPU-229ENST00000640440 ERCC6L2Q5T890 1561 aa25.01■■□□□ 1.59
HNRNPU-229ENST00000640440 SHROOM2Q13796 1616 aa25.01■■□□□ 1.59
HNRNPU-229ENST00000640440 KIF27Q86VH2 1401 aa25■■□□□ 1.59
HNRNPU-229ENST00000640440 CUL7Q14999 1698 aa24.95■■□□□ 1.58
HNRNPU-229ENST00000640440 RUSC2Q8N2Y8 1516 aa24.92■■□□□ 1.58
HNRNPU-229ENST00000640440 IGF1RP08069 1367 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms