RNA–Protein interactions for RNA: ENST00000568358.1

HERPUD1-213, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 5

Gene HERPUD1, Length 751 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-213ENST00000568358 AEBP2Q6ZN18 517 aaPredicted RBP12.88□□□□□ -0.35
HERPUD1-213ENST00000568358 CHIC1Q5VXU3 224 aa12.29□□□□□ -0.44
HERPUD1-213ENST00000568358 NISCHQ9Y2I1 1504 aa11.37□□□□□ -0.59
HERPUD1-213ENST00000568358 SENP3Q9H4L4 574 aaPredicted RBP11.11□□□□□ -0.63
HERPUD1-213ENST00000568358 PHF23Q9BUL5 403 aaPredicted RBP10.91□□□□□ -0.66
HERPUD1-213ENST00000568358 FOXD1Q16676 465 aa10.27□□□□□ -0.77
HERPUD1-213ENST00000568358 CCDC180Q9P1Z9 1646 aa10.2□□□□□ -0.78
HERPUD1-213ENST00000568358 ABCC9O60706 1549 aa10.17□□□□□ -0.78
HERPUD1-213ENST00000568358 PLPPR3Q6T4P5 718 aa9.86□□□□□ -0.83
HERPUD1-213ENST00000568358 DCAF8L2P0C7V8 631 aa9.73□□□□□ -0.85
HERPUD1-213ENST00000568358 RB1CC1Q8TDY2 1594 aa9.72□□□□□ -0.85
HERPUD1-213ENST00000568358 MSH5O43196 834 aa9.72□□□□□ -0.85
HERPUD1-213ENST00000568358 NACADO15069 1562 aa9.66□□□□□ -0.86
HERPUD1-213ENST00000568358 PIAS4Q8N2W9 510 aaPredicted RBP9.64□□□□□ -0.87
HERPUD1-213ENST00000568358 PPP6R1Q9UPN7 881 aa9.55□□□□□ -0.88
HERPUD1-213ENST00000568358 ADRA2BP18089 450 aa9.54□□□□□ -0.88
HERPUD1-213ENST00000568358 MYO15BQ96JP2 1530 aa9.51□□□□□ -0.89
HERPUD1-213ENST00000568358 PABPN1Q86U42 306 aaKnown RBP eCLIP9.5□□□□□ -0.89
HERPUD1-213ENST00000568358 UNC13AQ9UPW8 1703 aa9.48□□□□□ -0.89
HERPUD1-213ENST00000568358 DNAJC5BQ9UF47 199 aa9.48□□□□□ -0.89
HERPUD1-213ENST00000568358 POTEDQ86YR6 584 aa9.43□□□□□ -0.9
HERPUD1-213ENST00000568358 ZCCHC6Q5VYS8 1495 aaKnown RBP9.4□□□□□ -0.9
HERPUD1-213ENST00000568358 DCAF1Q9Y4B6 1507 aa9.39□□□□□ -0.91
HERPUD1-213ENST00000568358 BICRAQ9NZM4 1560 aa9.36□□□□□ -0.91
HERPUD1-213ENST00000568358 SCRIBQ14160 1630 aa9.3□□□□□ -0.92
HERPUD1-213ENST00000568358 SHROOM4Q9ULL8 1493 aa9.28□□□□□ -0.92
HERPUD1-213ENST00000568358 CC2D2AQ9P2K1 1620 aa9.2□□□□□ -0.94
HERPUD1-213ENST00000568358 EIF4G1Q04637 1599 aaKnown RBP9.16□□□□□ -0.94
HERPUD1-213ENST00000568358 CECR2Q9BXF3 1484 aa9.16□□□□□ -0.94
HERPUD1-213ENST00000568358 NCAPD3P42695 1498 aa8.89□□□□□ -0.99
HERPUD1-213ENST00000568358 SMARCA2P51531 1590 aa8.88□□□□□ -0.99
HERPUD1-213ENST00000568358 SCAF1Q9H7N4 1312 aaKnown RBP8.87□□□□□ -0.99
HERPUD1-213ENST00000568358 SMARCA4P51532 1647 aa8.87□□□□□ -0.99
HERPUD1-213ENST00000568358 ATAD2BQ9ULI0 1458 aa8.86□□□□□ -0.99
HERPUD1-213ENST00000568358 BAZ1AQ9NRL2 1556 aaPredicted RBP8.85□□□□□ -0.99
HERPUD1-213ENST00000568358 ERCC6Q03468 1493 aa8.83□□□□□ -1
HERPUD1-213ENST00000568358 HMGXB3Q12766 1538 aa8.82□□□□□ -1
HERPUD1-213ENST00000568358 BAZ1BQ9UIG0 1483 aaKnown RBP8.81□□□□□ -1
HERPUD1-213ENST00000568358 DMRT2Q9Y5R5 561 aa8.78□□□□□ -1
HERPUD1-213ENST00000568358 CUX2O14529 1486 aa8.77□□□□□ -1.01
HERPUD1-213ENST00000568358 PEG3Q9GZU2 1588 aa8.76□□□□□ -1.01
HERPUD1-213ENST00000568358 MROH2BQ7Z745 1585 aa8.75□□□□□ -1.01
HERPUD1-213ENST00000568358 MAPK8IP2Q13387 824 aaPredicted RBP8.75□□□□□ -1.01
HERPUD1-213ENST00000568358 EHMT2Q96KQ7 1210 aa8.75□□□□□ -1.01
HERPUD1-213ENST00000568358 DNAJC5Q9H3Z4 198 aa8.74□□□□□ -1.01
HERPUD1-213ENST00000568358 NESP48681 1621 aa8.72□□□□□ -1.01
HERPUD1-213ENST00000568358 SLC24A1O60721 1099 aa8.72□□□□□ -1.01
HERPUD1-213ENST00000568358 LAMC3Q9Y6N6 1575 aa8.7□□□□□ -1.02
HERPUD1-213ENST00000568358 PDS5BQ9NTI5 1447 aa8.69□□□□□ -1.02
HERPUD1-213ENST00000568358 WIZO95785 1651 aa8.67□□□□□ -1.02
HERPUD1-213ENST00000568358 CADPSQ9ULU8 1353 aa8.65□□□□□ -1.02
HERPUD1-213ENST00000568358 KIF21AQ7Z4S6 1674 aa8.64□□□□□ -1.03
HERPUD1-213ENST00000568358 THOC2Q8NI27 1593 aaKnown RBP8.61□□□□□ -1.03
HERPUD1-213ENST00000568358 PPP4R3CPQ6ZMV5 832 aa8.6□□□□□ -1.03
HERPUD1-213ENST00000568358 RSF1Q96T23 1441 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-213ENST00000568358 MRC2Q9UBG0 1479 aa8.57□□□□□ -1.04
HERPUD1-213ENST00000568358 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
HERPUD1-213ENST00000568358 TOP2AP11388 1531 aaKnown RBP8.55□□□□□ -1.04
HERPUD1-213ENST00000568358 FANCD2Q9BXW9 1451 aa8.54□□□□□ -1.04
HERPUD1-213ENST00000568358 CFTRP13569 1480 aa8.53□□□□□ -1.04
HERPUD1-213ENST00000568358 KCNA4P22459 653 aa8.52□□□□□ -1.05
HERPUD1-213ENST00000568358 WDR62O43379 1518 aa8.52□□□□□ -1.05
HERPUD1-213ENST00000568358 PRDM2Q13029 1718 aa8.49□□□□□ -1.05
HERPUD1-213ENST00000568358 CNKSR2Q8WXI2 1034 aa8.48□□□□□ -1.05
HERPUD1-213ENST00000568358 CCDC88BA6NC98 1476 aa8.47□□□□□ -1.05
HERPUD1-213ENST00000568358 CSRNP3Q8WYN3 585 aa8.47□□□□□ -1.05
HERPUD1-213ENST00000568358 HOXD11P31277 338 aaPredicted RBP8.45□□□□□ -1.06
HERPUD1-213ENST00000568358 OSCARQ8IYS5 282 aa8.44□□□□□ -1.06
HERPUD1-213ENST00000568358 URB2Q14146 1524 aaKnown RBP8.44□□□□□ -1.06
HERPUD1-213ENST00000568358 DCAF8L1A6NGE4 600 aa8.42□□□□□ -1.06
HERPUD1-213ENST00000568358 ABCC8Q09428 1581 aa8.42□□□□□ -1.06
HERPUD1-213ENST00000568358 TRIM41Q8WV44 630 aa8.41□□□□□ -1.06
HERPUD1-213ENST00000568358 RNF216Q9NWF9 866 aaPredicted RBP8.4□□□□□ -1.06
HERPUD1-213ENST00000568358 IFT140Q96RY7 1462 aa8.38□□□□□ -1.07
HERPUD1-213ENST00000568358 TOPBP1Q92547 1522 aa8.37□□□□□ -1.07
HERPUD1-213ENST00000568358 DNMBPQ6XZF7 1577 aa8.35□□□□□ -1.07
HERPUD1-213ENST00000568358 SUPT5HO00267 1087 aaKnown RBP8.34□□□□□ -1.07
HERPUD1-213ENST00000568358 NCBP3Q53F19 620 aaKnown RBP8.34□□□□□ -1.07
HERPUD1-213ENST00000568358 ZNF608Q9ULD9 1512 aaPredicted RBP8.33□□□□□ -1.08
HERPUD1-213ENST00000568358 FBLN2P98095 1184 aa8.32□□□□□ -1.08
HERPUD1-213ENST00000568358 CACNB1Q02641 598 aaPredicted RBP8.32□□□□□ -1.08
HERPUD1-213ENST00000568358 SOGA1O94964 1423 aa8.29□□□□□ -1.08
HERPUD1-213ENST00000568358 AQRO60306 1485 aaKnown RBP eCLIP8.29□□□□□ -1.088e-7■■■■■ 36.5
HERPUD1-213ENST00000568358 EIF4G3O43432 1585 aaKnown RBP8.28□□□□□ -1.08
HERPUD1-213ENST00000568358 POLA1P09884 1462 aaPredicted RBP8.27□□□□□ -1.09
HERPUD1-213ENST00000568358 TARBP1Q13395 1621 aaKnown RBP8.27□□□□□ -1.09
HERPUD1-213ENST00000568358 RAD54L2Q9Y4B4 1467 aa8.26□□□□□ -1.09
HERPUD1-213ENST00000568358 TDRD9Q8NDG6 1382 aaKnown RBP8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 CHMP7Q8WUX9 453 aaPredicted RBP8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 CHD1O14646 1710 aa8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 RIMBP3CA6NJZ7 1639 aa8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 RIMBP3BA6NNM3 1639 aa8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 RIMBP3Q9UFD9 1639 aa8.25□□□□□ -1.09
HERPUD1-213ENST00000568358 RNF39Q9H2S5 420 aa8.24□□□□□ -1.09
HERPUD1-213ENST00000568358 RTN4Q9NQC3 1192 aaKnown RBP8.24□□□□□ -1.09
HERPUD1-213ENST00000568358 FGD5Q6ZNL6 1462 aa8.24□□□□□ -1.09
HERPUD1-213ENST00000568358 WDR97A6NE52 1622 aa8.23□□□□□ -1.09
HERPUD1-213ENST00000568358 AMER1Q5JTC6 1135 aaPredicted RBP8.23□□□□□ -1.09
HERPUD1-213ENST00000568358 CYB5RLQ6IPT4 315 aa8.23□□□□□ -1.09
HERPUD1-213ENST00000568358 CUX1P39880 1505 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms