RNA–Protein interactions for RNA: ENST00000474961.5

DDX39B-217, Transcript of DExD-box helicase 39B, humanhuman

TSL 2

Gene DDX39B, Length 974 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39B-217ENST00000474961 AEBP2Q6ZN18 517 aaPredicted RBP25.55■■□□□ 1.68
DDX39B-217ENST00000474961 CHIC1Q5VXU3 224 aa24.96■■□□□ 1.59
DDX39B-217ENST00000474961 NISCHQ9Y2I1 1504 aa22.3■■□□□ 1.16
DDX39B-217ENST00000474961 SENP3Q9H4L4 574 aaPredicted RBP21.88■■□□□ 1.09
DDX39B-217ENST00000474961 PHF23Q9BUL5 403 aaPredicted RBP21.86■■□□□ 1.09
DDX39B-217ENST00000474961 PLPPR3Q6T4P5 718 aa20.3■□□□□ 0.84
DDX39B-217ENST00000474961 FOXD1Q16676 465 aa20.21■□□□□ 0.83
DDX39B-217ENST00000474961 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
DDX39B-217ENST00000474961 ADRA2BP18089 450 aa19.35■□□□□ 0.69
DDX39B-217ENST00000474961 PPP6R1Q9UPN7 881 aa19.32■□□□□ 0.68
DDX39B-217ENST00000474961 PIAS4Q8N2W9 510 aaPredicted RBP19.11■□□□□ 0.65
DDX39B-217ENST00000474961 ABCC9O60706 1549 aa18.84■□□□□ 0.61
DDX39B-217ENST00000474961 MSH5O43196 834 aa18.81■□□□□ 0.6
DDX39B-217ENST00000474961 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
DDX39B-217ENST00000474961 DCAF8L2P0C7V8 631 aa18.49■□□□□ 0.55
DDX39B-217ENST00000474961 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
DDX39B-217ENST00000474961 NACADO15069 1562 aa18.36■□□□□ 0.53
DDX39B-217ENST00000474961 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
DDX39B-217ENST00000474961 RB1CC1Q8TDY2 1594 aa18.29■□□□□ 0.52
DDX39B-217ENST00000474961 SCRIBQ14160 1630 aa17.98■□□□□ 0.47
DDX39B-217ENST00000474961 UNC13AQ9UPW8 1703 aa17.95■□□□□ 0.46
DDX39B-217ENST00000474961 SHROOM4Q9ULL8 1493 aa17.9■□□□□ 0.46
DDX39B-217ENST00000474961 SCAF1Q9H7N4 1312 aaKnown RBP17.9■□□□□ 0.46
DDX39B-217ENST00000474961 PPP4R3CPQ6ZMV5 832 aa17.84■□□□□ 0.45
DDX39B-217ENST00000474961 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
DDX39B-217ENST00000474961 PABPN1Q86U42 306 aaKnown RBP eCLIP17.68■□□□□ 0.423e-19■■□□□ 11.8
DDX39B-217ENST00000474961 MAPK8IP2Q13387 824 aaPredicted RBP17.56■□□□□ 0.4
DDX39B-217ENST00000474961 NCBP3Q53F19 620 aaKnown RBP17.46■□□□□ 0.39
DDX39B-217ENST00000474961 CNKSR2Q8WXI2 1034 aa17.4■□□□□ 0.38
DDX39B-217ENST00000474961 DMRT2Q9Y5R5 561 aa17.39■□□□□ 0.37
DDX39B-217ENST00000474961 CECR2Q9BXF3 1484 aa17.34■□□□□ 0.37
DDX39B-217ENST00000474961 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
DDX39B-217ENST00000474961 KCNA4P22459 653 aa17.24■□□□□ 0.35
DDX39B-217ENST00000474961 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
DDX39B-217ENST00000474961 EIF4G1Q04637 1599 aaKnown RBP17.22■□□□□ 0.35
DDX39B-217ENST00000474961 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
DDX39B-217ENST00000474961 POTEDQ86YR6 584 aa17.2■□□□□ 0.34
DDX39B-217ENST00000474961 RSF1Q96T23 1441 aaPredicted RBP17.15■□□□□ 0.34
DDX39B-217ENST00000474961 DNAJC5BQ9UF47 199 aa17.08■□□□□ 0.32
DDX39B-217ENST00000474961 RNF216Q9NWF9 866 aaPredicted RBP17.07■□□□□ 0.32
DDX39B-217ENST00000474961 WIZO95785 1651 aa17.07■□□□□ 0.32
DDX39B-217ENST00000474961 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
DDX39B-217ENST00000474961 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
DDX39B-217ENST00000474961 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
DDX39B-217ENST00000474961 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.32
DDX39B-217ENST00000474961 ATAD2BQ9ULI0 1458 aa17.01■□□□□ 0.31
DDX39B-217ENST00000474961 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
DDX39B-217ENST00000474961 HOXD11P31277 338 aaPredicted RBP16.99■□□□□ 0.31
DDX39B-217ENST00000474961 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
DDX39B-217ENST00000474961 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
DDX39B-217ENST00000474961 HMGXB3Q12766 1538 aa16.89■□□□□ 0.29
DDX39B-217ENST00000474961 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
DDX39B-217ENST00000474961 DCAF8L1A6NGE4 600 aa16.74■□□□□ 0.27
DDX39B-217ENST00000474961 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
DDX39B-217ENST00000474961 SLC4A1APQ9BWU0 796 aaKnown RBP16.48■□□□□ 0.23
DDX39B-217ENST00000474961 CADPSQ9ULU8 1353 aa16.46■□□□□ 0.23
DDX39B-217ENST00000474961 CFTRP13569 1480 aa16.45■□□□□ 0.22
DDX39B-217ENST00000474961 LAMC3Q9Y6N6 1575 aa16.43■□□□□ 0.22
DDX39B-217ENST00000474961 PRDM2Q13029 1718 aa16.43■□□□□ 0.22
DDX39B-217ENST00000474961 NESP48681 1621 aa16.43■□□□□ 0.22
DDX39B-217ENST00000474961 PDS5BQ9NTI5 1447 aa16.29■□□□□ 0.2
DDX39B-217ENST00000474961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.29■□□□□ 0.24e-16■■□□□ 13.3
DDX39B-217ENST00000474961 KIF21AQ7Z4S6 1674 aa16.28■□□□□ 0.2
DDX39B-217ENST00000474961 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
DDX39B-217ENST00000474961 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
DDX39B-217ENST00000474961 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
DDX39B-217ENST00000474961 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
DDX39B-217ENST00000474961 WRNQ14191 1432 aaPredicted RBP eCLIP16.15■□□□□ 0.18
DDX39B-217ENST00000474961 CUX1P39880 1505 aa16.12■□□□□ 0.17
DDX39B-217ENST00000474961 MRC2Q9UBG0 1479 aa16.11■□□□□ 0.17
DDX39B-217ENST00000474961 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
DDX39B-217ENST00000474961 URB2Q14146 1524 aaKnown RBP16.1■□□□□ 0.17
DDX39B-217ENST00000474961 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
DDX39B-217ENST00000474961 BIVM-ERCC5R4GMW8 1640 aa16.09■□□□□ 0.17
DDX39B-217ENST00000474961 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
DDX39B-217ENST00000474961 TOP2BQ02880 1626 aa16.08■□□□□ 0.17
DDX39B-217ENST00000474961 TOPBP1Q92547 1522 aa16.08■□□□□ 0.16
DDX39B-217ENST00000474961 SLC4A2P04920 1241 aa16.07■□□□□ 0.16
DDX39B-217ENST00000474961 TRIM41Q8WV44 630 aa16.07■□□□□ 0.16
DDX39B-217ENST00000474961 WDR62O43379 1518 aa16.04■□□□□ 0.16
DDX39B-217ENST00000474961 RNF39Q9H2S5 420 aa16.01■□□□□ 0.15
DDX39B-217ENST00000474961 FGD5Q6ZNL6 1462 aa15.99■□□□□ 0.15
DDX39B-217ENST00000474961 FOXD4L1Q9NU39 408 aa15.97■□□□□ 0.15
DDX39B-217ENST00000474961 POLA1P09884 1462 aaPredicted RBP15.96■□□□□ 0.14
DDX39B-217ENST00000474961 SOGA1O94964 1423 aa15.91■□□□□ 0.14
DDX39B-217ENST00000474961 CUX2O14529 1486 aa15.91■□□□□ 0.14
DDX39B-217ENST00000474961 RAD54L2Q9Y4B4 1467 aa15.91■□□□□ 0.14
DDX39B-217ENST00000474961 C1QBPQ07021 282 aaKnown RBP15.9■□□□□ 0.14
DDX39B-217ENST00000474961 TARBP1Q13395 1621 aaKnown RBP15.88■□□□□ 0.13
DDX39B-217ENST00000474961 DNAJC5Q9H3Z4 198 aa15.88■□□□□ 0.13
DDX39B-217ENST00000474961 U3KPZ7 1027 aaPredicted RBP15.88■□□□□ 0.13
DDX39B-217ENST00000474961 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
DDX39B-217ENST00000474961 IFT140Q96RY7 1462 aa15.85■□□□□ 0.13
DDX39B-217ENST00000474961 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
DDX39B-217ENST00000474961 ABCA10Q8WWZ4 1543 aa15.84■□□□□ 0.13
DDX39B-217ENST00000474961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.12
DDX39B-217ENST00000474961 HNRNPUL2Q1KMD3 747 aaKnown RBP15.83■□□□□ 0.12
DDX39B-217ENST00000474961 MYCNP04198 464 aaPredicted RBP15.82■□□□□ 0.12
DDX39B-217ENST00000474961 RUSC2Q8N2Y8 1516 aa15.8■□□□□ 0.12
DDX39B-217ENST00000474961 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 712.5 ms