Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ATP5G1-201ENST00000355938 598 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.455e-10■■■□□ 18.7
YBX3P16989 ATP5G1-207ENST00000513347 2214 ntTSL 210.01□□□□□ -0.815e-10■■■□□ 18.7
YBX3P16989 CCT3-212ENST00000478640 583 ntTSL 215.2■□□□□ 0.026e-12■■■□□ 18.7
YBX3P16989 CCT3-215ENST00000496684 748 ntTSL 211□□□□□ -0.656e-12■■■□□ 18.7
YBX3P16989 CCT3-216ENST00000533194 581 ntTSL 310.04□□□□□ -0.86e-12■■■□□ 18.7
YBX3P16989 CCT3-207ENST00000413555 842 ntTSL 57.75□□□□□ -1.176e-12■■■□□ 18.7
YBX3P16989 CCT3-210ENST00000463132 610 ntTSL 36.32□□□□□ -1.46e-12■■■□□ 18.7
YBX3P16989 CCT3-209ENST00000446905 593 ntTSL 36.17□□□□□ -1.426e-12■■■□□ 18.7
YBX3P16989 CCT3-214ENST00000490221 696 ntTSL 25.72□□□□□ -1.496e-12■■■□□ 18.7
YBX3P16989 SMARCB1-205ENST00000417137 889 ntTSL 329.35■■■□□ 2.293e-8■■■□□ 18.7
YBX3P16989 SMARCB1-207ENST00000491967 605 ntTSL 1 (best)11.39□□□□□ -0.593e-8■■■□□ 18.7
YBX3P16989 SMARCB1-208ENST00000634926 269 ntTSL 1 (best)5.51□□□□□ -1.533e-8■■■□□ 18.7
YBX3P16989 SMARCB1-209ENST00000635578 242 ntTSL 1 (best)2.83□□□□□ -1.963e-8■■■□□ 18.7
YBX3P16989 SSR4-205ENST00000447375 427 ntTSL 217.77■□□□□ 0.446e-14■■■□□ 18.7
YBX3P16989 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC16.95■□□□□ 0.33e-7■■■□□ 18.7
YBX3P16989 CLTC-213ENST00000584313 715 ntTSL 318.9■□□□□ 0.629e-22■■■□□ 18.7
YBX3P16989 CLTC-212ENST00000580081 575 ntTSL 410.36□□□□□ -0.759e-22■■■□□ 18.7
YBX3P16989 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.63■□□□□ 0.732e-11■■■□□ 18.7
YBX3P16989 HTT-208ENST00000510626 14438 ntTSL 1 (best)8.33□□□□□ -1.082e-6■■■□□ 18.7
YBX3P16989 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.162e-6■■■□□ 18.7
YBX3P16989 SLC25A32-205ENST00000523866 1347 ntTSL 224.88■■□□□ 1.574e-7■■■□□ 18.7
YBX3P16989 SLC25A32-203ENST00000523256 2711 ntTSL 515.93■□□□□ 0.144e-7■■■□□ 18.7
YBX3P16989 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.114e-7■■■□□ 18.7
YBX3P16989 SLC25A32-202ENST00000521645 2815 ntTSL 515.23■□□□□ 0.034e-7■■■□□ 18.7
YBX3P16989 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.252e-6■■■□□ 18.7
YBX3P16989 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.69□□□□□ -0.222e-6■■■□□ 18.7
YBX3P16989 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.282e-6■■■□□ 18.7
YBX3P16989 SMG1-211ENST00000565324 12465 ntTSL 1 (best)5.07□□□□□ -1.62e-6■■■□□ 18.7
YBX3P16989 CHST11-204ENST00000549016 573 ntTSL 414.31□□□□□ -0.128e-7■■■□□ 18.6
YBX3P16989 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.193e-7■■■□□ 18.6
YBX3P16989 ADSL-215ENST00000624503 754 ntTSL 525.14■■□□□ 1.622e-15■■■□□ 18.6
YBX3P16989 ADSL-204ENST00000466863 686 ntTSL 223.07■■□□□ 1.282e-15■■■□□ 18.6
YBX3P16989 GRHPR-208ENST00000493368 1136 ntTSL 1 (best)22.86■■□□□ 1.253e-7■■■□□ 18.6
YBX3P16989 GRHPR-206ENST00000487399 952 ntTSL 219.67■□□□□ 0.743e-7■■■□□ 18.6
YBX3P16989 CD99-208ENST00000482405 842 ntTSL 227.17■■□□□ 1.942e-6■■■□□ 18.6
YBX3P16989 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.882e-6■■■□□ 18.6
YBX3P16989 CD99-206ENST00000449611 604 ntAPPRIS ALT2 TSL 524.74■■□□□ 1.552e-6■■■□□ 18.6
YBX3P16989 CD99-211ENST00000623253 573 ntTSL 1 (best)22.55■■□□□ 1.22e-6■■■□□ 18.6
YBX3P16989 JAG1-204ENST00000612857 586 ntTSL 512.47□□□□□ -0.412e-6■■■□□ 18.6
YBX3P16989 JAG1-205ENST00000613518 597 ntTSL 510.93□□□□□ -0.662e-6■■■□□ 18.6
YBX3P16989 MTIF2-202ENST00000366137 955 ntTSL 1 (best)20.33■□□□□ 0.851e-6■■■□□ 18.6
YBX3P16989 MTIF2-212ENST00000446660 865 ntTSL 517.63■□□□□ 0.411e-6■■■□□ 18.6
YBX3P16989 MTIF2-204ENST00000403721 2386 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.721e-6■■■□□ 18.6
YBX3P16989 MTIF2-211ENST00000441307 583 ntTSL 37.97□□□□□ -1.131e-6■■■□□ 18.6
YBX3P16989 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.231e-6■■■□□ 18.6
YBX3P16989 NEK6-209ENST00000444973 790 ntTSL 538.98■■■■□ 3.839e-6■■■□□ 18.6
YBX3P16989 NEK6-211ENST00000454453 732 ntTSL 336.1■■■■□ 3.379e-6■■■□□ 18.6
YBX3P16989 RNF130-204ENST00000520911 1790 ntTSL 1 (best)34.62■■■■□ 3.139e-6■■■□□ 18.6
YBX3P16989 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.85■■■□□ 2.859e-6■■■□□ 18.6
YBX3P16989 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.029e-6■■■□□ 18.6
YBX3P16989 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.279e-6■■■□□ 18.6
YBX3P16989 NEK6-210ENST00000447379 716 ntTSL 521.42■■□□□ 1.029e-6■■■□□ 18.6
YBX3P16989 CNN1-209ENST00000592338 525 ntTSL 521.31■■□□□ 19e-6■■■□□ 18.6
YBX3P16989 API5-211ENST00000534695 560 ntTSL 5 BASIC21.26■□□□□ 0.999e-6■■■□□ 18.6
YBX3P16989 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.02■□□□□ 0.959e-6■■■□□ 18.6
YBX3P16989 NEK6-206ENST00000422297 799 ntTSL 319.67■□□□□ 0.749e-6■■■□□ 18.6
YBX3P16989 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.39■□□□□ 0.699e-6■■■□□ 18.6
YBX3P16989 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.21■□□□□ 0.679e-6■■■□□ 18.6
YBX3P16989 SP100-215ENST00000470940 487 ntTSL 218.73■□□□□ 0.599e-6■■■□□ 18.6
YBX3P16989 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.559e-6■■■□□ 18.6
YBX3P16989 NEK6-202ENST00000373596 758 ntTSL 318.2■□□□□ 0.59e-6■■■□□ 18.6
YBX3P16989 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.2■□□□□ 0.59e-6■■■□□ 18.6
YBX3P16989 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.1■□□□□ 0.499e-6■■■□□ 18.6
YBX3P16989 CNN1-206ENST00000587087 512 ntTSL 518.04■□□□□ 0.489e-6■■■□□ 18.6
YBX3P16989 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.489e-6■■■□□ 18.6
YBX3P16989 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.93■□□□□ 0.469e-6■■■□□ 18.6
YBX3P16989 CNN1-205ENST00000586577 685 ntTSL 317.8■□□□□ 0.449e-6■■■□□ 18.6
YBX3P16989 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.78■□□□□ 0.449e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-207ENST00000489094 2274 ntTSL 517.5■□□□□ 0.399e-6■■■□□ 18.6
YBX3P16989 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.44■□□□□ 0.389e-6■■■□□ 18.6
YBX3P16989 NEK6-207ENST00000423785 726 ntTSL 517.3■□□□□ 0.369e-6■■■□□ 18.6
YBX3P16989 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17■□□□□ 0.319e-6■■■□□ 18.6
YBX3P16989 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.299e-6■■■□□ 18.6
YBX3P16989 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.77■□□□□ 0.289e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.65■□□□□ 0.269e-6■■■□□ 18.6
YBX3P16989 BNIP1-203ENST00000352523 1143 ntTSL 1 (best) BASIC16.1■□□□□ 0.179e-6■■■□□ 18.6
YBX3P16989 BNIP1-205ENST00000519459 1130 ntTSL 315.71■□□□□ 0.119e-6■■■□□ 18.6
YBX3P16989 CNN1-204ENST00000586059 565 ntTSL 315.38■□□□□ 0.059e-6■■■□□ 18.6
YBX3P16989 SP100-203ENST00000409112 2198 ntTSL 1 (best) BASIC15.38■□□□□ 0.059e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.059e-6■■■□□ 18.6
YBX3P16989 TMEM222-205ENST00000470223 2841 ntTSL 215.17■□□□□ 0.029e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.07■□□□□ 09e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.079e-6■■■□□ 18.6
YBX3P16989 GTF2IRD1-204ENST00000470715 824 ntTSL 314.29□□□□□ -0.129e-6■■■□□ 18.6
YBX3P16989 NEK6-208ENST00000425237 806 ntTSL 314.24□□□□□ -0.139e-6■■■□□ 18.6
YBX3P16989 BNIP1-204ENST00000393770 721 ntTSL 1 (best) BASIC14.2□□□□□ -0.149e-6■■■□□ 18.6
YBX3P16989 TMEM222-206ENST00000471456 2861 ntTSL 214.14□□□□□ -0.159e-6■■■□□ 18.6
YBX3P16989 CLK3-205ENST00000561673 639 ntTSL 313.83□□□□□ -0.29e-6■■■□□ 18.6
YBX3P16989 ZP3-202ENST00000394857 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.249e-6■■■□□ 18.6
YBX3P16989 OGDH-209ENST00000497326 554 ntTSL 413.19□□□□□ -0.39e-6■■■□□ 18.6
YBX3P16989 SP100-214ENST00000466710 574 ntTSL 413.13□□□□□ -0.319e-6■■■□□ 18.6
YBX3P16989 NEK6-212ENST00000539416 2582 ntTSL 2 BASIC12.88□□□□□ -0.359e-6■■■□□ 18.6
YBX3P16989 NEK6-213ENST00000540326 2578 ntTSL 1 (best) BASIC12.64□□□□□ -0.399e-6■■■□□ 18.6
YBX3P16989 CLK3-208ENST00000562626 812 ntTSL 212.42□□□□□ -0.429e-6■■■□□ 18.6
YBX3P16989 NEK6-205ENST00000394199 2535 ntTSL 2 BASIC12.35□□□□□ -0.439e-6■■■□□ 18.6
YBX3P16989 NEK6-203ENST00000373600 3619 ntTSL 1 (best) BASIC12.31□□□□□ -0.449e-6■■■□□ 18.6
YBX3P16989 SP100-206ENST00000409897 2037 ntTSL 2 BASIC12.3□□□□□ -0.449e-6■■■□□ 18.6
YBX3P16989 SP100-202ENST00000340126 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.469e-6■■■□□ 18.6
YBX3P16989 NEK6-201ENST00000320246 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.559e-6■■■□□ 18.6
YBX3P16989 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC11.3□□□□□ -0.69e-6■■■□□ 18.6
Retrieved 100 of 29,075 protein–RNA pairs in 490.5 ms