RNA–Protein interactions for RNA: ENST00000252456.6

CNN1-201, Transcript of calponin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNN1, Length 1,633 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN1-201ENST00000252456 NISCHQ9Y2I1 1504 aa34.82■■■■□ 3.16
CNN1-201ENST00000252456 CCDC180Q9P1Z9 1646 aa30.98■■■□□ 2.55
CNN1-201ENST00000252456 ABCC9O60706 1549 aa30.26■■■□□ 2.43
CNN1-201ENST00000252456 RB1CC1Q8TDY2 1594 aa29.11■■■□□ 2.25
CNN1-201ENST00000252456 NACADO15069 1562 aa29.08■■■□□ 2.25
CNN1-201ENST00000252456 ZCCHC6Q5VYS8 1495 aaKnown RBP29.03■■■□□ 2.24
CNN1-201ENST00000252456 DCAF8L2P0C7V8 631 aa28.94■■■□□ 2.22
CNN1-201ENST00000252456 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
CNN1-201ENST00000252456 DCAF1Q9Y4B6 1507 aa28.82■■■□□ 2.2
CNN1-201ENST00000252456 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
CNN1-201ENST00000252456 BICRAQ9NZM4 1560 aa28.32■■■□□ 2.12
CNN1-201ENST00000252456 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
CNN1-201ENST00000252456 PABPN1Q86U42 306 aaKnown RBP eCLIP28.24■■■□□ 2.11
CNN1-201ENST00000252456 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
CNN1-201ENST00000252456 DNAJC5BQ9UF47 199 aa27.8■■■□□ 2.04
CNN1-201ENST00000252456 EIF4G1Q04637 1599 aaKnown RBP27.52■■■□□ 2
CNN1-201ENST00000252456 CC2D2AQ9P2K1 1620 aa27.41■■□□□ 1.98
CNN1-201ENST00000252456 CECR2Q9BXF3 1484 aa27.18■■□□□ 1.94
CNN1-201ENST00000252456 SMARCA4P51532 1647 aa27.04■■□□□ 1.92
CNN1-201ENST00000252456 BAZ1AQ9NRL2 1556 aaPredicted RBP26.97■■□□□ 1.91
CNN1-201ENST00000252456 ATAD2BQ9ULI0 1458 aa26.86■■□□□ 1.89
CNN1-201ENST00000252456 MROH2BQ7Z745 1585 aa26.85■■□□□ 1.89
CNN1-201ENST00000252456 NCAPD3P42695 1498 aa26.84■■□□□ 1.89
CNN1-201ENST00000252456 SMARCA2P51531 1590 aa26.82■■□□□ 1.88
CNN1-201ENST00000252456 PEG3Q9GZU2 1588 aa26.79■■□□□ 1.88
CNN1-201ENST00000252456 HMGXB3Q12766 1538 aa26.73■■□□□ 1.87
CNN1-201ENST00000252456 BAZ1BQ9UIG0 1483 aaKnown RBP26.62■■□□□ 1.85
CNN1-201ENST00000252456 WIZO95785 1651 aa26.57■■□□□ 1.84
CNN1-201ENST00000252456 RSF1Q96T23 1441 aaPredicted RBP26.52■■□□□ 1.84
CNN1-201ENST00000252456 TOP2AP11388 1531 aaKnown RBP26.27■■□□□ 1.8
CNN1-201ENST00000252456 NESP48681 1621 aa26.22■■□□□ 1.79
CNN1-201ENST00000252456 LAMC3Q9Y6N6 1575 aa26.14■■□□□ 1.77
CNN1-201ENST00000252456 CADPSQ9ULU8 1353 aa26.03■■□□□ 1.76
CNN1-201ENST00000252456 ERCC6Q03468 1493 aa26.03■■□□□ 1.76
CNN1-201ENST00000252456 KIF21AQ7Z4S6 1674 aa25.95■■□□□ 1.74
CNN1-201ENST00000252456 CCDC88BA6NC98 1476 aa25.94■■□□□ 1.74
CNN1-201ENST00000252456 CFTRP13569 1480 aa25.92■■□□□ 1.74
CNN1-201ENST00000252456 PDS5BQ9NTI5 1447 aa25.9■■□□□ 1.74
CNN1-201ENST00000252456 THOC2Q8NI27 1593 aaKnown RBP25.86■■□□□ 1.73
CNN1-201ENST00000252456 CUX2O14529 1486 aa25.79■■□□□ 1.72
CNN1-201ENST00000252456 PRDM2Q13029 1718 aa25.78■■□□□ 1.72
CNN1-201ENST00000252456 SUPT5HO00267 1087 aaKnown RBP25.75■■□□□ 1.71
CNN1-201ENST00000252456 FANCD2Q9BXW9 1451 aa25.75■■□□□ 1.71
CNN1-201ENST00000252456 CEP164Q9UPV0 1460 aa25.71■■□□□ 1.71
CNN1-201ENST00000252456 MRC2Q9UBG0 1479 aa25.68■■□□□ 1.7
CNN1-201ENST00000252456 WDR62O43379 1518 aa25.64■■□□□ 1.69
CNN1-201ENST00000252456 URB2Q14146 1524 aaKnown RBP25.53■■□□□ 1.68
CNN1-201ENST00000252456 TOPBP1Q92547 1522 aa25.35■■□□□ 1.65
CNN1-201ENST00000252456 DNMBPQ6XZF7 1577 aa25.33■■□□□ 1.65
CNN1-201ENST00000252456 ABCC8Q09428 1581 aa25.3■■□□□ 1.64
CNN1-201ENST00000252456 CUX1P39880 1505 aa25.19■■□□□ 1.62
CNN1-201ENST00000252456 IFT140Q96RY7 1462 aa25.16■■□□□ 1.62
CNN1-201ENST00000252456 POLA1P09884 1462 aaPredicted RBP25.15■■□□□ 1.62
CNN1-201ENST00000252456 TARBP1Q13395 1621 aaKnown RBP25.12■■□□□ 1.61
CNN1-201ENST00000252456 ZNF608Q9ULD9 1512 aaPredicted RBP25.1■■□□□ 1.61
CNN1-201ENST00000252456 FGD5Q6ZNL6 1462 aa25.08■■□□□ 1.61
CNN1-201ENST00000252456 RAD54L2Q9Y4B4 1467 aa25.03■■□□□ 1.6
CNN1-201ENST00000252456 EIF4G3O43432 1585 aaKnown RBP25.02■■□□□ 1.6
CNN1-201ENST00000252456 BIVM-ERCC5R4GMW8 1640 aa24.99■■□□□ 1.59
CNN1-201ENST00000252456 SYNJ1O43426 1573 aa24.99■■□□□ 1.59
CNN1-201ENST00000252456 SOGA1O94964 1423 aa24.99■■□□□ 1.59
CNN1-201ENST00000252456 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.59
CNN1-201ENST00000252456 DNAJC5Q9H3Z4 198 aa24.97■■□□□ 1.59
CNN1-201ENST00000252456 TOP2BQ02880 1626 aa24.97■■□□□ 1.59
CNN1-201ENST00000252456 WDR97A6NE52 1622 aa24.95■■□□□ 1.58
CNN1-201ENST00000252456 AQRO60306 1485 aaKnown RBP eCLIP24.92■■□□□ 1.58
CNN1-201ENST00000252456 TDRD9Q8NDG6 1382 aaKnown RBP24.86■■□□□ 1.57
CNN1-201ENST00000252456 ABCA10Q8WWZ4 1543 aa24.84■■□□□ 1.57
CNN1-201ENST00000252456 ABCA5Q8WWZ7 1642 aa24.78■■□□□ 1.56
CNN1-201ENST00000252456 PBRM1Q86U86 1689 aa24.73■■□□□ 1.55
CNN1-201ENST00000252456 GAPVD1Q14C86 1478 aa24.72■■□□□ 1.55
CNN1-201ENST00000252456 GRIN2BQ13224 1484 aa24.71■■□□□ 1.55
CNN1-201ENST00000252456 CHD1O14646 1710 aa24.71■■□□□ 1.55
CNN1-201ENST00000252456 SNAPC4Q5SXM2 1469 aa24.7■■□□□ 1.54
CNN1-201ENST00000252456 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
CNN1-201ENST00000252456 MAGI1Q96QZ7 1491 aaPredicted RBP24.66■■□□□ 1.54
CNN1-201ENST00000252456 SYNJ2O15056 1496 aa24.57■■□□□ 1.52
CNN1-201ENST00000252456 ERICH3Q5RHP9 1530 aa24.53■■□□□ 1.52
CNN1-201ENST00000252456 ADAMTS12P58397 1594 aa24.53■■□□□ 1.52
CNN1-201ENST00000252456 FBLN2P98095 1184 aa24.53■■□□□ 1.52
CNN1-201ENST00000252456 CHMP7Q8WUX9 453 aaPredicted RBP24.47■■□□□ 1.51
CNN1-201ENST00000252456 CLASP1Q7Z460 1538 aa24.44■■□□□ 1.5
CNN1-201ENST00000252456 KIF27Q86VH2 1401 aa24.43■■□□□ 1.5
CNN1-201ENST00000252456 FHAD1B1AJZ9 1412 aa24.42■■□□□ 1.5
CNN1-201ENST00000252456 GRIN2AQ12879 1464 aa24.42■■□□□ 1.5
CNN1-201ENST00000252456 RIMBP3CA6NJZ7 1639 aa24.37■■□□□ 1.49
CNN1-201ENST00000252456 RIMBP3BA6NNM3 1639 aa24.37■■□□□ 1.49
CNN1-201ENST00000252456 RIMBP3Q9UFD9 1639 aa24.37■■□□□ 1.49
CNN1-201ENST00000252456 IGF1RP08069 1367 aa24.36■■□□□ 1.49
CNN1-201ENST00000252456 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
CNN1-201ENST00000252456 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
CNN1-201ENST00000252456 NUP160Q12769 1436 aa24.33■■□□□ 1.48
CNN1-201ENST00000252456 CUL7Q14999 1698 aa24.32■■□□□ 1.48
CNN1-201ENST00000252456 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
CNN1-201ENST00000252456 RUSC2Q8N2Y8 1516 aa24.28■■□□□ 1.48
CNN1-201ENST00000252456 CARMIL1Q5VZK9 1371 aa24.18■■□□□ 1.46
CNN1-201ENST00000252456 SHROOM2Q13796 1616 aa24.18■■□□□ 1.46
CNN1-201ENST00000252456 ARAP1Q96P48 1450 aa24.17■■□□□ 1.46
CNN1-201ENST00000252456 ERCC6L2Q5T890 1561 aa24.12■■□□□ 1.45
CNN1-201ENST00000252456 CHIC1Q5VXU3 224 aa24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms