RNA–Protein interactions for RNA: ENST00000478640.6

CCT3-212, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 2

Gene CCT3, Length 583 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-212ENST00000478640 NISCHQ9Y2I1 1504 aa27.57■■■□□ 2
CCT3-212ENST00000478640 ABCC9O60706 1549 aa24.67■■□□□ 1.54
CCT3-212ENST00000478640 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
CCT3-212ENST00000478640 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
CCT3-212ENST00000478640 RB1CC1Q8TDY2 1594 aa23.38■■□□□ 1.33
CCT3-212ENST00000478640 AEBP2Q6ZN18 517 aaPredicted RBP23.33■■□□□ 1.33
CCT3-212ENST00000478640 NACADO15069 1562 aa23.23■■□□□ 1.31
CCT3-212ENST00000478640 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
CCT3-212ENST00000478640 DNAJC5BQ9UF47 199 aa23.1■■□□□ 1.29
CCT3-212ENST00000478640 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
CCT3-212ENST00000478640 ZCCHC6Q5VYS8 1495 aaKnown RBP22.8■■□□□ 1.24
CCT3-212ENST00000478640 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
CCT3-212ENST00000478640 DCAF1Q9Y4B6 1507 aa22.64■■□□□ 1.21
CCT3-212ENST00000478640 UNC13AQ9UPW8 1703 aa22.63■■□□□ 1.21
CCT3-212ENST00000478640 BICRAQ9NZM4 1560 aa22.63■■□□□ 1.21
CCT3-212ENST00000478640 SCRIBQ14160 1630 aa22.52■■□□□ 1.2
CCT3-212ENST00000478640 SHROOM4Q9ULL8 1493 aa22.27■■□□□ 1.16
CCT3-212ENST00000478640 CECR2Q9BXF3 1484 aa22.17■■□□□ 1.14
CCT3-212ENST00000478640 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.14
CCT3-212ENST00000478640 EIF4G1Q04637 1599 aaKnown RBP22.12■■□□□ 1.13
CCT3-212ENST00000478640 NCAPD3P42695 1498 aa21.52■■□□□ 1.03
CCT3-212ENST00000478640 ATAD2BQ9ULI0 1458 aa21.48■■□□□ 1.03
CCT3-212ENST00000478640 SMARCA4P51532 1647 aa21.4■■□□□ 1.02
CCT3-212ENST00000478640 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
CCT3-212ENST00000478640 BAZ1AQ9NRL2 1556 aaPredicted RBP21.36■■□□□ 1.01
CCT3-212ENST00000478640 ERCC6Q03468 1493 aa21.32■■□□□ 1
CCT3-212ENST00000478640 BAZ1BQ9UIG0 1483 aaKnown RBP21.32■■□□□ 1
CCT3-212ENST00000478640 MROH2BQ7Z745 1585 aa21.27■■□□□ 1
CCT3-212ENST00000478640 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
CCT3-212ENST00000478640 NESP48681 1621 aa21.19■□□□□ 0.98
CCT3-212ENST00000478640 PEG3Q9GZU2 1588 aa21.11■□□□□ 0.97
CCT3-212ENST00000478640 DNAJC5Q9H3Z4 198 aa21.08■□□□□ 0.97
CCT3-212ENST00000478640 CUX2O14529 1486 aa21.05■□□□□ 0.96
CCT3-212ENST00000478640 WIZO95785 1651 aa20.99■□□□□ 0.95
CCT3-212ENST00000478640 PDS5BQ9NTI5 1447 aa20.96■□□□□ 0.95
CCT3-212ENST00000478640 CADPSQ9ULU8 1353 aa20.96■□□□□ 0.95
CCT3-212ENST00000478640 RSF1Q96T23 1441 aaPredicted RBP20.94■□□□□ 0.94
CCT3-212ENST00000478640 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
CCT3-212ENST00000478640 KIF21AQ7Z4S6 1674 aa20.73■□□□□ 0.91
CCT3-212ENST00000478640 THOC2Q8NI27 1593 aaKnown RBP20.73■□□□□ 0.91
CCT3-212ENST00000478640 MRC2Q9UBG0 1479 aa20.7■□□□□ 0.9
CCT3-212ENST00000478640 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
CCT3-212ENST00000478640 FANCD2Q9BXW9 1451 aa20.69■□□□□ 0.9
CCT3-212ENST00000478640 CFTRP13569 1480 aa20.66■□□□□ 0.9
CCT3-212ENST00000478640 CEP164Q9UPV0 1460 aa20.66■□□□□ 0.9
CCT3-212ENST00000478640 CCDC88BA6NC98 1476 aa20.59■□□□□ 0.89
CCT3-212ENST00000478640 WDR62O43379 1518 aa20.55■□□□□ 0.88
CCT3-212ENST00000478640 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
CCT3-212ENST00000478640 SUPT5HO00267 1087 aaKnown RBP20.45■□□□□ 0.86
CCT3-212ENST00000478640 TRIM41Q8WV44 630 aa20.4■□□□□ 0.86
CCT3-212ENST00000478640 OSCARQ8IYS5 282 aa20.39■□□□□ 0.85
CCT3-212ENST00000478640 TOPBP1Q92547 1522 aa20.27■□□□□ 0.83
CCT3-212ENST00000478640 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
CCT3-212ENST00000478640 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
CCT3-212ENST00000478640 ABCC8Q09428 1581 aa20.23■□□□□ 0.83
CCT3-212ENST00000478640 FBLN2P98095 1184 aa20.21■□□□□ 0.83
CCT3-212ENST00000478640 PRDM2Q13029 1718 aa20.16■□□□□ 0.82
CCT3-212ENST00000478640 AQRO60306 1485 aaKnown RBP eCLIP20.15■□□□□ 0.825e-9■■■■□ 26.3
CCT3-212ENST00000478640 DNMBPQ6XZF7 1577 aa20.14■□□□□ 0.81
CCT3-212ENST00000478640 SOGA1O94964 1423 aa20.11■□□□□ 0.81
CCT3-212ENST00000478640 TDRD9Q8NDG6 1382 aaKnown RBP20.1■□□□□ 0.81
CCT3-212ENST00000478640 RAD54L2Q9Y4B4 1467 aa20.09■□□□□ 0.81
CCT3-212ENST00000478640 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
CCT3-212ENST00000478640 POLA1P09884 1462 aaPredicted RBP20.06■□□□□ 0.8
CCT3-212ENST00000478640 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
CCT3-212ENST00000478640 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
CCT3-212ENST00000478640 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
CCT3-212ENST00000478640 CYB5RLQ6IPT4 315 aa19.97■□□□□ 0.79
CCT3-212ENST00000478640 TARBP1Q13395 1621 aaKnown RBP19.97■□□□□ 0.79
CCT3-212ENST00000478640 CUX1P39880 1505 aa19.96■□□□□ 0.79
CCT3-212ENST00000478640 SNAPC4Q5SXM2 1469 aa19.86■□□□□ 0.77
CCT3-212ENST00000478640 ARHGEF11O15085 1522 aa19.83■□□□□ 0.77
CCT3-212ENST00000478640 GRIN2BQ13224 1484 aa19.83■□□□□ 0.76
CCT3-212ENST00000478640 RIMBP3CA6NJZ7 1639 aa19.83■□□□□ 0.76
CCT3-212ENST00000478640 RIMBP3BA6NNM3 1639 aa19.83■□□□□ 0.76
CCT3-212ENST00000478640 RIMBP3Q9UFD9 1639 aa19.83■□□□□ 0.76
CCT3-212ENST00000478640 GAPVD1Q14C86 1478 aa19.79■□□□□ 0.76
CCT3-212ENST00000478640 WRNQ14191 1432 aaPredicted RBP eCLIP19.79■□□□□ 0.76
CCT3-212ENST00000478640 SENP3Q9H4L4 574 aaPredicted RBP19.79■□□□□ 0.76
CCT3-212ENST00000478640 TRHP20396 242 aaPredicted RBP19.77■□□□□ 0.76
CCT3-212ENST00000478640 CHD1O14646 1710 aa19.76■□□□□ 0.75
CCT3-212ENST00000478640 MAGI1Q96QZ7 1491 aaPredicted RBP19.75■□□□□ 0.75
CCT3-212ENST00000478640 SYNJ2O15056 1496 aa19.73■□□□□ 0.75
CCT3-212ENST00000478640 ABCA10Q8WWZ4 1543 aa19.72■□□□□ 0.75
CCT3-212ENST00000478640 WDR97A6NE52 1622 aa19.69■□□□□ 0.74
CCT3-212ENST00000478640 SYNJ1O43426 1573 aa19.65■□□□□ 0.74
CCT3-212ENST00000478640 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
CCT3-212ENST00000478640 TOP2BQ02880 1626 aa19.62■□□□□ 0.73
CCT3-212ENST00000478640 CLASP1Q7Z460 1538 aa19.57■□□□□ 0.72
CCT3-212ENST00000478640 ABCA5Q8WWZ7 1642 aa19.57■□□□□ 0.72
CCT3-212ENST00000478640 PBRM1Q86U86 1689 aa19.56■□□□□ 0.72
CCT3-212ENST00000478640 FHAD1B1AJZ9 1412 aa19.55■□□□□ 0.72
CCT3-212ENST00000478640 GRIN2AQ12879 1464 aa19.54■□□□□ 0.72
CCT3-212ENST00000478640 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
CCT3-212ENST00000478640 JPH4Q96JJ6 628 aa19.47■□□□□ 0.71
CCT3-212ENST00000478640 ERICH3Q5RHP9 1530 aa19.45■□□□□ 0.7
CCT3-212ENST00000478640 ADAMTS12P58397 1594 aa19.44■□□□□ 0.7
CCT3-212ENST00000478640 NUP160Q12769 1436 aa19.43■□□□□ 0.7
CCT3-212ENST00000478640 KIF27Q86VH2 1401 aa19.42■□□□□ 0.7
CCT3-212ENST00000478640 CEP170Q5SW79 1584 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms