RNA–Protein interactions for RNA: ENST00000447375.1

SSR4-205, Transcript of signal sequence receptor subunit 4, humanhuman

TSL 2

Gene SSR4, Length 427 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-205ENST00000447375 NISCHQ9Y2I1 1504 aa31.18■■■□□ 2.58
SSR4-205ENST00000447375 ABCC9O60706 1549 aa29.07■■■□□ 2.24
SSR4-205ENST00000447375 CCDC180Q9P1Z9 1646 aa28.22■■■□□ 2.11
SSR4-205ENST00000447375 DNAJC5BQ9UF47 199 aa28■■■□□ 2.07
SSR4-205ENST00000447375 RB1CC1Q8TDY2 1594 aa27.29■■□□□ 1.96
SSR4-205ENST00000447375 PABPN1Q86U42 306 aaKnown RBP eCLIP27.01■■□□□ 1.91
SSR4-205ENST00000447375 NACADO15069 1562 aa26.92■■□□□ 1.9
SSR4-205ENST00000447375 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
SSR4-205ENST00000447375 UNC13AQ9UPW8 1703 aa26.59■■□□□ 1.85
SSR4-205ENST00000447375 BICRAQ9NZM4 1560 aa26.51■■□□□ 1.83
SSR4-205ENST00000447375 MYO15BQ96JP2 1530 aa26.29■■□□□ 1.8
SSR4-205ENST00000447375 CECR2Q9BXF3 1484 aa26.26■■□□□ 1.79
SSR4-205ENST00000447375 DNAJC5Q9H3Z4 198 aa26.26■■□□□ 1.79
SSR4-205ENST00000447375 CC2D2AQ9P2K1 1620 aa26.18■■□□□ 1.78
SSR4-205ENST00000447375 SHROOM4Q9ULL8 1493 aa26.06■■□□□ 1.76
SSR4-205ENST00000447375 EIF4G1Q04637 1599 aaKnown RBP25.94■■□□□ 1.74
SSR4-205ENST00000447375 SCRIBQ14160 1630 aa25.72■■□□□ 1.71
SSR4-205ENST00000447375 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
SSR4-205ENST00000447375 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
SSR4-205ENST00000447375 CUX2O14529 1486 aa25.34■■□□□ 1.65
SSR4-205ENST00000447375 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
SSR4-205ENST00000447375 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
SSR4-205ENST00000447375 TRIM41Q8WV44 630 aa24.83■■□□□ 1.57
SSR4-205ENST00000447375 NESP48681 1621 aa24.75■■□□□ 1.55
SSR4-205ENST00000447375 ATAD2BQ9ULI0 1458 aa24.72■■□□□ 1.55
SSR4-205ENST00000447375 HMGXB3Q12766 1538 aa24.59■■□□□ 1.53
SSR4-205ENST00000447375 SMARCA2P51531 1590 aa24.58■■□□□ 1.52
SSR4-205ENST00000447375 THOC2Q8NI27 1593 aaKnown RBP24.58■■□□□ 1.52
SSR4-205ENST00000447375 SMARCA4P51532 1647 aa24.45■■□□□ 1.5
SSR4-205ENST00000447375 BAZ1BQ9UIG0 1483 aaKnown RBP24.43■■□□□ 1.5
SSR4-205ENST00000447375 LAMC3Q9Y6N6 1575 aa24.42■■□□□ 1.5
SSR4-205ENST00000447375 PDS5BQ9NTI5 1447 aa24.36■■□□□ 1.49
SSR4-205ENST00000447375 KIF21AQ7Z4S6 1674 aa24.33■■□□□ 1.49
SSR4-205ENST00000447375 BAZ1AQ9NRL2 1556 aaPredicted RBP24.24■■□□□ 1.47
SSR4-205ENST00000447375 PEG3Q9GZU2 1588 aa24.21■■□□□ 1.47
SSR4-205ENST00000447375 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
SSR4-205ENST00000447375 OSCARQ8IYS5 282 aa24.15■■□□□ 1.46
SSR4-205ENST00000447375 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.45
SSR4-205ENST00000447375 WDR62O43379 1518 aa24.1■■□□□ 1.45
SSR4-205ENST00000447375 MROH2BQ7Z745 1585 aa24.02■■□□□ 1.44
SSR4-205ENST00000447375 CEP164Q9UPV0 1460 aa23.92■■□□□ 1.42
SSR4-205ENST00000447375 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
SSR4-205ENST00000447375 RIMBP3CA6NJZ7 1639 aa23.8■■□□□ 1.4
SSR4-205ENST00000447375 RIMBP3BA6NNM3 1639 aa23.8■■□□□ 1.4
SSR4-205ENST00000447375 RIMBP3Q9UFD9 1639 aa23.8■■□□□ 1.4
SSR4-205ENST00000447375 WIZO95785 1651 aa23.67■■□□□ 1.38
SSR4-205ENST00000447375 ARHGEF11O15085 1522 aa23.67■■□□□ 1.38
SSR4-205ENST00000447375 URB2Q14146 1524 aaKnown RBP23.67■■□□□ 1.38
SSR4-205ENST00000447375 CFTRP13569 1480 aa23.67■■□□□ 1.38
SSR4-205ENST00000447375 CYB5RLQ6IPT4 315 aa23.65■■□□□ 1.38
SSR4-205ENST00000447375 TRHP20396 242 aaPredicted RBP23.64■■□□□ 1.37
SSR4-205ENST00000447375 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
SSR4-205ENST00000447375 AEBP2Q6ZN18 517 aaPredicted RBP23.51■■□□□ 1.35
SSR4-205ENST00000447375 IFT140Q96RY7 1462 aa23.48■■□□□ 1.35
SSR4-205ENST00000447375 ARAP1Q96P48 1450 aa23.39■■□□□ 1.34
SSR4-205ENST00000447375 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
SSR4-205ENST00000447375 FBLN2P98095 1184 aa23.3■■□□□ 1.32
SSR4-205ENST00000447375 EIF4G3O43432 1585 aaKnown RBP23.29■■□□□ 1.32
SSR4-205ENST00000447375 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
SSR4-205ENST00000447375 RSF1Q96T23 1441 aaPredicted RBP23.27■■□□□ 1.32
SSR4-205ENST00000447375 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.311e-7■■■■■ 36.9
SSR4-205ENST00000447375 CHD1O14646 1710 aa23.24■■□□□ 1.31
SSR4-205ENST00000447375 PRDM2Q13029 1718 aa23.24■■□□□ 1.31
SSR4-205ENST00000447375 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
SSR4-205ENST00000447375 CCDC88BA6NC98 1476 aa23.12■■□□□ 1.29
SSR4-205ENST00000447375 DNMBPQ6XZF7 1577 aa23.11■■□□□ 1.29
SSR4-205ENST00000447375 TARBP1Q13395 1621 aaKnown RBP23.1■■□□□ 1.29
SSR4-205ENST00000447375 POLA1P09884 1462 aaPredicted RBP23■■□□□ 1.27
SSR4-205ENST00000447375 TDRD9Q8NDG6 1382 aaKnown RBP23■■□□□ 1.27
SSR4-205ENST00000447375 CLASP1Q7Z460 1538 aa22.99■■□□□ 1.27
SSR4-205ENST00000447375 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
SSR4-205ENST00000447375 RAD54L2Q9Y4B4 1467 aa22.97■■□□□ 1.27
SSR4-205ENST00000447375 SNAPC4Q5SXM2 1469 aa22.94■■□□□ 1.26
SSR4-205ENST00000447375 SOGA1O94964 1423 aa22.93■■□□□ 1.26
SSR4-205ENST00000447375 SYNJ1O43426 1573 aa22.92■■□□□ 1.26
SSR4-205ENST00000447375 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
SSR4-205ENST00000447375 MAGI1Q96QZ7 1491 aaPredicted RBP22.84■■□□□ 1.25
SSR4-205ENST00000447375 SYNJ2O15056 1496 aa22.79■■□□□ 1.24
SSR4-205ENST00000447375 WDR97A6NE52 1622 aa22.79■■□□□ 1.24
SSR4-205ENST00000447375 GRIN2BQ13224 1484 aa22.79■■□□□ 1.24
SSR4-205ENST00000447375 FGD5Q6ZNL6 1462 aa22.75■■□□□ 1.23
SSR4-205ENST00000447375 CUX1P39880 1505 aa22.61■■□□□ 1.21
SSR4-205ENST00000447375 ERCC6L2Q5T890 1561 aa22.59■■□□□ 1.21
SSR4-205ENST00000447375 ILDR1Q86SU0 546 aaPredicted RBP22.56■■□□□ 1.2
SSR4-205ENST00000447375 PBRM1Q86U86 1689 aa22.55■■□□□ 1.2
SSR4-205ENST00000447375 CEP170Q5SW79 1584 aa22.49■■□□□ 1.19
SSR4-205ENST00000447375 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
SSR4-205ENST00000447375 KIF13AQ9H1H9 1805 aa22.47■■□□□ 1.19
SSR4-205ENST00000447375 KDM4FA0A1W2PPD8 638 aa22.45■■□□□ 1.18
SSR4-205ENST00000447375 ABCA10Q8WWZ4 1543 aa22.45■■□□□ 1.18
SSR4-205ENST00000447375 NUP160Q12769 1436 aa22.44■■□□□ 1.18
SSR4-205ENST00000447375 ABCA5Q8WWZ7 1642 aa22.43■■□□□ 1.18
SSR4-205ENST00000447375 FAM69CQ0P6D2 419 aa22.43■■□□□ 1.18
SSR4-205ENST00000447375 SHROOM2Q13796 1616 aa22.37■■□□□ 1.17
SSR4-205ENST00000447375 ABCC10Q5T3U5 1492 aa22.34■■□□□ 1.17
SSR4-205ENST00000447375 NPM1P06748 294 aaKnown RBP eCLIP22.34■■□□□ 1.17
SSR4-205ENST00000447375 ADAMTS12P58397 1594 aa22.33■■□□□ 1.16
SSR4-205ENST00000447375 PRG4Q92954 1404 aaPredicted RBP22.31■■□□□ 1.16
SSR4-205ENST00000447375 FHAD1B1AJZ9 1412 aa22.3■■□□□ 1.16
SSR4-205ENST00000447375 SUPT5HO00267 1087 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms