RNA–Protein interactions for RNA: ENST00000510626.5

HTT-208, Transcript of huntingtin, humanhuman

TSL 1 (best)

Gene HTT, Length 14,438 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-208ENST00000510626 MYT1Q01538 1121 aa14.08□□□□□ -0.15
HTT-208ENST00000510626 PELP1Q8IZL8 1130 aaKnown RBP13.81□□□□□ -0.2
HTT-208ENST00000510626 ZEB1P37275 1124 aaPredicted RBP13.09□□□□□ -0.31
HTT-208ENST00000510626 DCAF8L2P0C7V8 631 aa13.07□□□□□ -0.32
HTT-208ENST00000510626 CCER1Q8TC90 406 aaPredicted RBP13.06□□□□□ -0.32
HTT-208ENST00000510626 TTBK1Q5TCY1 1321 aaPredicted RBP13.05□□□□□ -0.32
HTT-208ENST00000510626 CENPBP07199 599 aaPredicted RBP13.02□□□□□ -0.33
HTT-208ENST00000510626 NISCHQ9Y2I1 1504 aa12.97□□□□□ -0.33
HTT-208ENST00000510626 YTHDC1Q96MU7 727 aaKnown RBP12.89□□□□□ -0.35
HTT-208ENST00000510626 SUPT5HO00267 1087 aaKnown RBP12.85□□□□□ -0.35
HTT-208ENST00000510626 ERICH6Q7L0X2 663 aa12.8□□□□□ -0.36
HTT-208ENST00000510626 APLP2Q06481 763 aa12.78□□□□□ -0.36
HTT-208ENST00000510626 NEFLP07196 543 aa12.59□□□□□ -0.39
HTT-208ENST00000510626 FAM9AQ8IZU1 332 aaPredicted RBP12.58□□□□□ -0.4
HTT-208ENST00000510626 PCGF6Q9BYE7 350 aa12.55□□□□□ -0.4
HTT-208ENST00000510626 CLSPNQ9HAW4 1339 aa12.38□□□□□ -0.43
HTT-208ENST00000510626 SHROOM4Q9ULL8 1493 aa12.37□□□□□ -0.43
HTT-208ENST00000510626 MYT1LQ9UL68 1186 aa12.3□□□□□ -0.44
HTT-208ENST00000510626 HRCP23327 699 aa12.3□□□□□ -0.44
HTT-208ENST00000510626 DAXXQ9UER7 740 aaPredicted RBP12.29□□□□□ -0.44
HTT-208ENST00000510626 TRIM26Q12899 539 aaPredicted RBP12.28□□□□□ -0.44
HTT-208ENST00000510626 TRIM41Q8WV44 630 aa12.17□□□□□ -0.46
HTT-208ENST00000510626 RTL5Q5HYW3 569 aaPredicted RBP12.12□□□□□ -0.47
HTT-208ENST00000510626 EHMT2Q96KQ7 1210 aa12.02□□□□□ -0.49
HTT-208ENST00000510626 UBTFP17480 764 aaKnown RBP11.99□□□□□ -0.49
HTT-208ENST00000510626 GLIPR1L2Q4G1C9 344 aa11.95□□□□□ -0.5
HTT-208ENST00000510626 ZNF316A6NFI3 1004 aaPredicted RBP11.95□□□□□ -0.5
HTT-208ENST00000510626 DIEXFQ68CQ4 756 aaKnown RBP11.86□□□□□ -0.51
HTT-208ENST00000510626 CDK11AQ9UQ88 783 aaPredicted RBP11.77□□□□□ -0.53
HTT-208ENST00000510626 ATP1B4Q9UN42 357 aaPredicted RBP11.69□□□□□ -0.54
HTT-208ENST00000510626 CHIC1Q5VXU3 224 aa11.69□□□□□ -0.54
HTT-208ENST00000510626 ANP32AP39687 249 aaKnown RBP11.66□□□□□ -0.54
HTT-208ENST00000510626 GTF3C3Q9Y5Q9 886 aa11.65□□□□□ -0.54
HTT-208ENST00000510626 ACIN1Q9UKV3 1341 aaKnown RBP11.65□□□□□ -0.54
HTT-208ENST00000510626 ANP32CO43423 234 aa11.64□□□□□ -0.55
HTT-208ENST00000510626 ANP32BQ92688 251 aaKnown RBP11.62□□□□□ -0.55
HTT-208ENST00000510626 RANGAP1P46060 587 aaPredicted RBP11.58□□□□□ -0.56
HTT-208ENST00000510626 ANP32EQ9BTT0 268 aa11.57□□□□□ -0.56
HTT-208ENST00000510626 DCAF1Q9Y4B6 1507 aa11.54□□□□□ -0.56
HTT-208ENST00000510626 ZBTB47Q9UFB7 747 aaPredicted RBP11.53□□□□□ -0.56
HTT-208ENST00000510626 EIF5BO60841 1220 aaKnown RBP11.47□□□□□ -0.57
HTT-208ENST00000510626 PPARGC1BQ86YN6 1023 aaKnown RBP11.46□□□□□ -0.57
HTT-208ENST00000510626 HNRNPUL2Q1KMD3 747 aaKnown RBP11.46□□□□□ -0.57
HTT-208ENST00000510626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.46□□□□□ -0.58
HTT-208ENST00000510626 LOC105371045A0A1W2PR82 267 aa11.43□□□□□ -0.58
HTT-208ENST00000510626 NCLP19338 710 aaKnown RBP11.43□□□□□ -0.58
HTT-208ENST00000510626 UPF2Q9HAU5 1272 aaKnown RBP11.41□□□□□ -0.58
HTT-208ENST00000510626 POLR3GLQ9BT43 218 aa11.41□□□□□ -0.58
HTT-208ENST00000510626 NEFMP07197 916 aa11.39□□□□□ -0.59
HTT-208ENST00000510626 ARID4BQ4LE39 1312 aaPredicted RBP11.39□□□□□ -0.59
HTT-208ENST00000510626 ITGAEP38570 1179 aa11.37□□□□□ -0.59
HTT-208ENST00000510626 TNNT2P45379 298 aaPredicted RBP11.34□□□□□ -0.59
HTT-208ENST00000510626 CCDC180Q9P1Z9 1646 aa11.33□□□□□ -0.6
HTT-208ENST00000510626 NEUROD1Q13562 356 aa11.31□□□□□ -0.6
HTT-208ENST00000510626 TRIM44Q96DX7 344 aaPredicted RBP11.31□□□□□ -0.6
HTT-208ENST00000510626 DDRGK1Q96HY6 314 aa11.31□□□□□ -0.6
HTT-208ENST00000510626 CANXP27824 592 aaKnown RBP11.31□□□□□ -0.6
HTT-208ENST00000510626 BCANQ96GW7 911 aa11.3□□□□□ -0.6
HTT-208ENST00000510626 HSP90AA1P07900 732 aaKnown RBP11.28□□□□□ -0.6
HTT-208ENST00000510626 FAM50AQ14320 339 aaKnown RBP11.27□□□□□ -0.61
HTT-208ENST00000510626 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.25□□□□□ -0.61
HTT-208ENST00000510626 ERICH6BQ5W0A0 696 aa11.23□□□□□ -0.61
HTT-208ENST00000510626 BECN1Q14457 450 aa11.23□□□□□ -0.61
HTT-208ENST00000510626 TRIM52Q96A61 297 aa11.23□□□□□ -0.61
HTT-208ENST00000510626 SLC4A1APQ9BWU0 796 aaKnown RBP11.2□□□□□ -0.62
HTT-208ENST00000510626 FKBP8Q14318 412 aa11.18□□□□□ -0.62
HTT-208ENST00000510626 CCDC136Q96JN2 1154 aa11.17□□□□□ -0.62
HTT-208ENST00000510626 GOLGA6L22H0YM25 854 aa11.17□□□□□ -0.62
HTT-208ENST00000510626 PPM1GO15355 546 aaPredicted RBP11.15□□□□□ -0.62
HTT-208ENST00000510626 TONSLQ96HA7 1378 aa11.13□□□□□ -0.63
HTT-208ENST00000510626 SCAF1Q9H7N4 1312 aaKnown RBP11.1□□□□□ -0.63
HTT-208ENST00000510626 NPM2Q86SE8 214 aaKnown RBP11.08□□□□□ -0.64
HTT-208ENST00000510626 CSRNP3Q8WYN3 585 aa11.08□□□□□ -0.64
HTT-208ENST00000510626 HNRNPUQ00839 825 aaKnown RBP eCLIP11.07□□□□□ -0.64
HTT-208ENST00000510626 PTMSP20962 102 aa11.06□□□□□ -0.64
HTT-208ENST00000510626 EEA1Q15075 1411 aa11.05□□□□□ -0.64
HTT-208ENST00000510626 MYH16Q9H6N6 1097 aa11.04□□□□□ -0.64
HTT-208ENST00000510626 NBR1Q14596 966 aa11.04□□□□□ -0.64
HTT-208ENST00000510626 CNGB1Q14028 1251 aaPredicted RBP11.03□□□□□ -0.64
HTT-208ENST00000510626 CFAP44Q96MT7 982 aa11.03□□□□□ -0.64
HTT-208ENST00000510626 SLC24A1O60721 1099 aa11.02□□□□□ -0.64
HTT-208ENST00000510626 L1TD1Q5T7N2 865 aaKnown RBP11.02□□□□□ -0.65
HTT-208ENST00000510626 USP35Q9P2H5 1018 aa11.01□□□□□ -0.65
HTT-208ENST00000510626 TMC1Q8TDI8 760 aa11.01□□□□□ -0.65
HTT-208ENST00000510626 TIMELESSQ9UNS1 1208 aa11□□□□□ -0.65
HTT-208ENST00000510626 CHMP4BQ9H444 224 aaKnown RBP11□□□□□ -0.65
HTT-208ENST00000510626 ZNF326Q5BKZ1 582 aaKnown RBP10.99□□□□□ -0.65
HTT-208ENST00000510626 CASC1Q6TDU7 716 aa10.96□□□□□ -0.65
HTT-208ENST00000510626 GOLGA6L6A8MZA4 724 aa10.96□□□□□ -0.65
HTT-208ENST00000510626 NRDCO43847 1150 aa10.96□□□□□ -0.65
HTT-208ENST00000510626 MRS2Q9HD23 443 aa10.96□□□□□ -0.66
HTT-208ENST00000510626 PPP4R2Q9NY27 417 aa10.96□□□□□ -0.66
HTT-208ENST00000510626 NOP58Q9Y2X3 529 aaKnown RBP10.96□□□□□ -0.66
HTT-208ENST00000510626 CDK11BP21127 795 aaKnown RBP10.95□□□□□ -0.66
HTT-208ENST00000510626 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
HTT-208ENST00000510626 WDR43Q15061 677 aaKnown RBP eCLIP10.94□□□□□ -0.66
HTT-208ENST00000510626 DDX10Q13206 875 aaKnown RBP10.92□□□□□ -0.66
HTT-208ENST00000510626 CDCA8Q53HL2 280 aa10.92□□□□□ -0.66
HTT-208ENST00000510626 MS4A1P11836 297 aa10.91□□□□□ -0.66
HTT-208ENST00000510626 PTMAP06454 111 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms