RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 NISCHQ9Y2I1 1504 aa55.39■■■■■ 6.46
SMARCB1-205ENST00000417137 CCDC180Q9P1Z9 1646 aa49.06■■■■■ 5.44
SMARCB1-205ENST00000417137 ABCC9O60706 1549 aa47.87■■■■■ 5.25
SMARCB1-205ENST00000417137 DCAF8L2P0C7V8 631 aa46.37■■■■■ 5.01
SMARCB1-205ENST00000417137 NACADO15069 1562 aa46.17■■■■■ 4.98
SMARCB1-205ENST00000417137 RB1CC1Q8TDY2 1594 aa46.16■■■■■ 4.98
SMARCB1-205ENST00000417137 ZCCHC6Q5VYS8 1495 aaKnown RBP46.15■■■■■ 4.98
SMARCB1-205ENST00000417137 MYO15BQ96JP2 1530 aa45.98■■■■■ 4.95
SMARCB1-205ENST00000417137 DCAF1Q9Y4B6 1507 aa45.85■■■■■ 4.93
SMARCB1-205ENST00000417137 UNC13AQ9UPW8 1703 aa44.9■■■■■ 4.78
SMARCB1-205ENST00000417137 DNAJC5BQ9UF47 199 aa44.87■■■■■ 4.77
SMARCB1-205ENST00000417137 PABPN1Q86U42 306 aaKnown RBP eCLIP44.84■■■■■ 4.77
SMARCB1-205ENST00000417137 SCRIBQ14160 1630 aa44.79■■■■■ 4.76
SMARCB1-205ENST00000417137 BICRAQ9NZM4 1560 aa44.65■■■■■ 4.74
SMARCB1-205ENST00000417137 SHROOM4Q9ULL8 1493 aa44.33■■■■■ 4.69
SMARCB1-205ENST00000417137 EIF4G1Q04637 1599 aaKnown RBP43.5■■■■■ 4.55
SMARCB1-205ENST00000417137 CC2D2AQ9P2K1 1620 aa43.26■■■■■ 4.52
SMARCB1-205ENST00000417137 CECR2Q9BXF3 1484 aa43.1■■■■■ 4.49
SMARCB1-205ENST00000417137 BAZ1AQ9NRL2 1556 aaPredicted RBP42.93■■■■■ 4.46
SMARCB1-205ENST00000417137 SMARCA4P51532 1647 aa42.87■■■■■ 4.45
SMARCB1-205ENST00000417137 ATAD2BQ9ULI0 1458 aa42.66■■■■■ 4.42
SMARCB1-205ENST00000417137 MROH2BQ7Z745 1585 aa42.65■■■■■ 4.42
SMARCB1-205ENST00000417137 NCAPD3P42695 1498 aa42.63■■■■■ 4.42
SMARCB1-205ENST00000417137 SMARCA2P51531 1590 aa42.63■■■■■ 4.41
SMARCB1-205ENST00000417137 PEG3Q9GZU2 1588 aa42.47■■■■■ 4.39
SMARCB1-205ENST00000417137 HMGXB3Q12766 1538 aa42.37■■■■■ 4.37
SMARCB1-205ENST00000417137 BAZ1BQ9UIG0 1483 aaKnown RBP42.33■■■■■ 4.37
SMARCB1-205ENST00000417137 RSF1Q96T23 1441 aaPredicted RBP42.31■■■■■ 4.36
SMARCB1-205ENST00000417137 WIZO95785 1651 aa42.17■■■■■ 4.34
SMARCB1-205ENST00000417137 TOP2AP11388 1531 aaKnown RBP41.79■■■■■ 4.28
SMARCB1-205ENST00000417137 DNAJC5Q9H3Z4 198 aa41.57■■■■■ 4.25
SMARCB1-205ENST00000417137 SUPT5HO00267 1087 aaKnown RBP41.52■■■■■ 4.24
SMARCB1-205ENST00000417137 NESP48681 1621 aa41.45■■■■■ 4.23
SMARCB1-205ENST00000417137 CADPSQ9ULU8 1353 aa41.43■■■■■ 4.22
SMARCB1-205ENST00000417137 LAMC3Q9Y6N6 1575 aa41.42■■■■■ 4.22
SMARCB1-205ENST00000417137 CCDC88BA6NC98 1476 aa41.34■■■■■ 4.21
SMARCB1-205ENST00000417137 ERCC6Q03468 1493 aa41.31■■■■■ 4.2
SMARCB1-205ENST00000417137 PDS5BQ9NTI5 1447 aa41.24■■■■■ 4.19
SMARCB1-205ENST00000417137 CUX2O14529 1486 aa41.22■■■■■ 4.19
SMARCB1-205ENST00000417137 CFTRP13569 1480 aa41.18■■■■■ 4.18
SMARCB1-205ENST00000417137 FANCD2Q9BXW9 1451 aa40.9■■■■■ 4.14
SMARCB1-205ENST00000417137 KIF21AQ7Z4S6 1674 aa40.88■■■■■ 4.14
SMARCB1-205ENST00000417137 CEP164Q9UPV0 1460 aa40.83■■■■■ 4.13
SMARCB1-205ENST00000417137 MRC2Q9UBG0 1479 aa40.72■■■■■ 4.11
SMARCB1-205ENST00000417137 PRDM2Q13029 1718 aa40.71■■■■■ 4.11
SMARCB1-205ENST00000417137 THOC2Q8NI27 1593 aaKnown RBP40.71■■■■■ 4.11
SMARCB1-205ENST00000417137 WDR62O43379 1518 aa40.53■■■■■ 4.08
SMARCB1-205ENST00000417137 URB2Q14146 1524 aaKnown RBP40.43■■■■■ 4.06
SMARCB1-205ENST00000417137 ABCC8Q09428 1581 aa40.35■■■■■ 4.05
SMARCB1-205ENST00000417137 TOPBP1Q92547 1522 aa40.26■■■■■ 4.03
SMARCB1-205ENST00000417137 DNMBPQ6XZF7 1577 aa40.21■■■■■ 4.03
SMARCB1-205ENST00000417137 CUX1P39880 1505 aa40■■■■□ 3.99
SMARCB1-205ENST00000417137 IFT140Q96RY7 1462 aa40■■■■□ 3.99
SMARCB1-205ENST00000417137 WRNQ14191 1432 aaPredicted RBP eCLIP39.92■■■■□ 3.98
SMARCB1-205ENST00000417137 POLA1P09884 1462 aaPredicted RBP39.92■■■■□ 3.98
SMARCB1-205ENST00000417137 FGD5Q6ZNL6 1462 aa39.87■■■■□ 3.97
SMARCB1-205ENST00000417137 SOGA1O94964 1423 aa39.85■■■■□ 3.97
SMARCB1-205ENST00000417137 RAD54L2Q9Y4B4 1467 aa39.75■■■■□ 3.95
SMARCB1-205ENST00000417137 TOP2BQ02880 1626 aa39.73■■■■□ 3.95
SMARCB1-205ENST00000417137 TARBP1Q13395 1621 aaKnown RBP39.73■■■■□ 3.95
SMARCB1-205ENST00000417137 ZNF608Q9ULD9 1512 aaPredicted RBP39.72■■■■□ 3.95
SMARCB1-205ENST00000417137 SYNJ1O43426 1573 aa39.68■■■■□ 3.94
SMARCB1-205ENST00000417137 BIVM-ERCC5R4GMW8 1640 aa39.67■■■■□ 3.94
SMARCB1-205ENST00000417137 AQRO60306 1485 aaKnown RBP eCLIP39.58■■■■□ 3.93
SMARCB1-205ENST00000417137 TDRD9Q8NDG6 1382 aaKnown RBP39.58■■■■□ 3.93
SMARCB1-205ENST00000417137 TRIM41Q8WV44 630 aa39.54■■■■□ 3.92
SMARCB1-205ENST00000417137 EIF4G3O43432 1585 aaKnown RBP39.53■■■■□ 3.92
SMARCB1-205ENST00000417137 ABCA10Q8WWZ4 1543 aa39.51■■■■□ 3.92
SMARCB1-205ENST00000417137 WDR97A6NE52 1622 aa39.5■■■■□ 3.91
SMARCB1-205ENST00000417137 GAPVD1Q14C86 1478 aa39.36■■■■□ 3.89
SMARCB1-205ENST00000417137 GRIN2BQ13224 1484 aa39.33■■■■□ 3.89
SMARCB1-205ENST00000417137 OSCARQ8IYS5 282 aa39.3■■■■□ 3.88
SMARCB1-205ENST00000417137 ABCA5Q8WWZ7 1642 aa39.24■■■■□ 3.87
SMARCB1-205ENST00000417137 SNAPC4Q5SXM2 1469 aa39.19■■■■□ 3.86
SMARCB1-205ENST00000417137 MAGI1Q96QZ7 1491 aaPredicted RBP39.18■■■■□ 3.86
SMARCB1-205ENST00000417137 FBLN2P98095 1184 aa39.18■■■■□ 3.86
SMARCB1-205ENST00000417137 CHMP7Q8WUX9 453 aaPredicted RBP39.12■■■■□ 3.85
SMARCB1-205ENST00000417137 PBRM1Q86U86 1689 aa39.1■■■■□ 3.85
SMARCB1-205ENST00000417137 KIF27Q86VH2 1401 aa39.1■■■■□ 3.85
SMARCB1-205ENST00000417137 ERICH3Q5RHP9 1530 aa39.04■■■■□ 3.84
SMARCB1-205ENST00000417137 SYNJ2O15056 1496 aa39.04■■■■□ 3.84
SMARCB1-205ENST00000417137 CHD1O14646 1710 aa38.94■■■■□ 3.82
SMARCB1-205ENST00000417137 FHAD1B1AJZ9 1412 aa38.94■■■■□ 3.82
SMARCB1-205ENST00000417137 IGF1RP08069 1367 aa38.91■■■■□ 3.82
SMARCB1-205ENST00000417137 ADAMTS12P58397 1594 aa38.86■■■■□ 3.81
SMARCB1-205ENST00000417137 CHIC1Q5VXU3 224 aa38.85■■■■□ 3.81
SMARCB1-205ENST00000417137 GRIN2AQ12879 1464 aa38.79■■■■□ 3.8
SMARCB1-205ENST00000417137 RIMBP3CA6NJZ7 1639 aa38.71■■■■□ 3.79
SMARCB1-205ENST00000417137 RIMBP3BA6NNM3 1639 aa38.71■■■■□ 3.79
SMARCB1-205ENST00000417137 RIMBP3Q9UFD9 1639 aa38.71■■■■□ 3.79
SMARCB1-205ENST00000417137 RUSC2Q8N2Y8 1516 aa38.7■■■■□ 3.79
SMARCB1-205ENST00000417137 CARMIL1Q5VZK9 1371 aa38.7■■■■□ 3.78
SMARCB1-205ENST00000417137 CUL7Q14999 1698 aa38.69■■■■□ 3.78
SMARCB1-205ENST00000417137 NUP160Q12769 1436 aa38.61■■■■□ 3.77
SMARCB1-205ENST00000417137 ARHGEF11O15085 1522 aa38.59■■■■□ 3.77
SMARCB1-205ENST00000417137 CLASP1Q7Z460 1538 aa38.58■■■■□ 3.77
SMARCB1-205ENST00000417137 EEA1Q15075 1411 aa38.53■■■■□ 3.76
SMARCB1-205ENST00000417137 CEP170Q5SW79 1584 aa38.52■■■■□ 3.76
SMARCB1-205ENST00000417137 CSRNP3Q8WYN3 585 aa38.49■■■■□ 3.75
SMARCB1-205ENST00000417137 RAPGEF2Q9Y4G8 1499 aa38.47■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms