RNA–Protein interactions for RNA: ENST00000355072.9

HTT-201, Transcript of huntingtin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HTT, Length 13,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-201ENST00000355072 PELP1Q8IZL8 1130 aaKnown RBP13.52□□□□□ -0.25
HTT-201ENST00000355072 MYT1Q01538 1121 aa13.52□□□□□ -0.25
HTT-201ENST00000355072 CCER1Q8TC90 406 aaPredicted RBP12.74□□□□□ -0.37
HTT-201ENST00000355072 YTHDC1Q96MU7 727 aaKnown RBP12.6□□□□□ -0.39
HTT-201ENST00000355072 NISCHQ9Y2I1 1504 aa12.54□□□□□ -0.4
HTT-201ENST00000355072 ZEB1P37275 1124 aaPredicted RBP12.53□□□□□ -0.4
HTT-201ENST00000355072 CENPBP07199 599 aaPredicted RBP12.51□□□□□ -0.41
HTT-201ENST00000355072 TTBK1Q5TCY1 1321 aaPredicted RBP12.47□□□□□ -0.41
HTT-201ENST00000355072 ERICH6Q7L0X2 663 aa12.28□□□□□ -0.44
HTT-201ENST00000355072 APLP2Q06481 763 aa12.13□□□□□ -0.47
HTT-201ENST00000355072 FAM9AQ8IZU1 332 aaPredicted RBP12.11□□□□□ -0.47
HTT-201ENST00000355072 NEFLP07196 543 aa12.04□□□□□ -0.48
HTT-201ENST00000355072 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
HTT-201ENST00000355072 CLSPNQ9HAW4 1339 aa11.9□□□□□ -0.5
HTT-201ENST00000355072 DAXXQ9UER7 740 aaPredicted RBP11.84□□□□□ -0.51
HTT-201ENST00000355072 MYT1LQ9UL68 1186 aa11.83□□□□□ -0.52
HTT-201ENST00000355072 SUPT5HO00267 1087 aaKnown RBP11.82□□□□□ -0.52
HTT-201ENST00000355072 RTL5Q5HYW3 569 aaPredicted RBP11.66□□□□□ -0.54
HTT-201ENST00000355072 GLIPR1L2Q4G1C9 344 aa11.66□□□□□ -0.54
HTT-201ENST00000355072 PCGF6Q9BYE7 350 aa11.64□□□□□ -0.55
HTT-201ENST00000355072 TRIM26Q12899 539 aaPredicted RBP11.59□□□□□ -0.55
HTT-201ENST00000355072 HRCP23327 699 aa11.5□□□□□ -0.57
HTT-201ENST00000355072 ZNF316A6NFI3 1004 aaPredicted RBP11.47□□□□□ -0.57
HTT-201ENST00000355072 TRIM41Q8WV44 630 aa11.38□□□□□ -0.59
HTT-201ENST00000355072 SHROOM4Q9ULL8 1493 aa11.36□□□□□ -0.59
HTT-201ENST00000355072 ANP32BQ92688 251 aaKnown RBP11.31□□□□□ -0.6
HTT-201ENST00000355072 ANP32AP39687 249 aaKnown RBP11.21□□□□□ -0.61
HTT-201ENST00000355072 DIEXFQ68CQ4 756 aaKnown RBP11.2□□□□□ -0.62
HTT-201ENST00000355072 ACIN1Q9UKV3 1341 aaKnown RBP11.19□□□□□ -0.62
HTT-201ENST00000355072 ANP32EQ9BTT0 268 aa11.19□□□□□ -0.62
HTT-201ENST00000355072 CDK11AQ9UQ88 783 aaPredicted RBP11.18□□□□□ -0.62
HTT-201ENST00000355072 NEFMP07197 916 aa11.16□□□□□ -0.62
HTT-201ENST00000355072 CCDC180Q9P1Z9 1646 aa11.15□□□□□ -0.63
HTT-201ENST00000355072 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.63
HTT-201ENST00000355072 EIF5BO60841 1220 aaKnown RBP11.14□□□□□ -0.63
HTT-201ENST00000355072 DCAF1Q9Y4B6 1507 aa11.1□□□□□ -0.63
HTT-201ENST00000355072 UPF2Q9HAU5 1272 aaKnown RBP11.06□□□□□ -0.64
HTT-201ENST00000355072 NCLP19338 710 aaKnown RBP11.05□□□□□ -0.64
HTT-201ENST00000355072 TNNT2P45379 298 aaPredicted RBP11.04□□□□□ -0.64
HTT-201ENST00000355072 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
HTT-201ENST00000355072 TRIM44Q96DX7 344 aaPredicted RBP11.03□□□□□ -0.64
HTT-201ENST00000355072 ARID4BQ4LE39 1312 aaPredicted RBP11.01□□□□□ -0.65
HTT-201ENST00000355072 ANP32CO43423 234 aa11□□□□□ -0.65
HTT-201ENST00000355072 GTF3C3Q9Y5Q9 886 aa10.93□□□□□ -0.66
HTT-201ENST00000355072 NEUROD1Q13562 356 aa10.9□□□□□ -0.66
HTT-201ENST00000355072 RANGAP1P46060 587 aaPredicted RBP10.88□□□□□ -0.67
HTT-201ENST00000355072 ERICH6BQ5W0A0 696 aa10.85□□□□□ -0.67
HTT-201ENST00000355072 HSP90AA1P07900 732 aaKnown RBP10.83□□□□□ -0.68
HTT-201ENST00000355072 DDRGK1Q96HY6 314 aa10.83□□□□□ -0.68
HTT-201ENST00000355072 EHMT2Q96KQ7 1210 aa10.8□□□□□ -0.68
HTT-201ENST00000355072 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.79□□□□□ -0.68
HTT-201ENST00000355072 GOLGA6L22H0YM25 854 aa10.79□□□□□ -0.68
HTT-201ENST00000355072 BECN1Q14457 450 aa10.79□□□□□ -0.68
HTT-201ENST00000355072 ATP1B4Q9UN42 357 aaPredicted RBP10.77□□□□□ -0.69
HTT-201ENST00000355072 CHIC1Q5VXU3 224 aa10.73□□□□□ -0.69
HTT-201ENST00000355072 CANXP27824 592 aaKnown RBP10.73□□□□□ -0.69
HTT-201ENST00000355072 PTMSP20962 102 aa10.72□□□□□ -0.69
HTT-201ENST00000355072 EEA1Q15075 1411 aa10.71□□□□□ -0.69
HTT-201ENST00000355072 CDK11BP21127 795 aaKnown RBP10.71□□□□□ -0.7
HTT-201ENST00000355072 CFAP44Q96MT7 982 aa10.7□□□□□ -0.7
HTT-201ENST00000355072 GOLGA6L6A8MZA4 724 aa10.68□□□□□ -0.7
HTT-201ENST00000355072 USP35Q9P2H5 1018 aa10.68□□□□□ -0.7
HTT-201ENST00000355072 NRDCO43847 1150 aa10.66□□□□□ -0.7
HTT-201ENST00000355072 PPM1GO15355 546 aaPredicted RBP10.66□□□□□ -0.7
HTT-201ENST00000355072 CHAF1AQ13111 956 aaPredicted RBP10.66□□□□□ -0.7
HTT-201ENST00000355072 CHMP4BQ9H444 224 aaKnown RBP10.65□□□□□ -0.7
HTT-201ENST00000355072 SLC24A1O60721 1099 aa10.65□□□□□ -0.7
HTT-201ENST00000355072 TONSLQ96HA7 1378 aa10.62□□□□□ -0.71
HTT-201ENST00000355072 L1TD1Q5T7N2 865 aaKnown RBP10.6□□□□□ -0.71
HTT-201ENST00000355072 MYH16Q9H6N6 1097 aa10.59□□□□□ -0.71
HTT-201ENST00000355072 CASC1Q6TDU7 716 aa10.59□□□□□ -0.71
HTT-201ENST00000355072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.59□□□□□ -0.71
HTT-201ENST00000355072 CCDC136Q96JN2 1154 aa10.57□□□□□ -0.72
HTT-201ENST00000355072 POLR3GLQ9BT43 218 aa10.54□□□□□ -0.72
HTT-201ENST00000355072 ZRSR1Q15695 479 aaKnown RBP10.54□□□□□ -0.72
HTT-201ENST00000355072 LAS1LQ9Y4W2 734 aaKnown RBP10.54□□□□□ -0.72
HTT-201ENST00000355072 ZNF326Q5BKZ1 582 aaKnown RBP10.54□□□□□ -0.72
HTT-201ENST00000355072 HNRNPUL2Q1KMD3 747 aaKnown RBP10.52□□□□□ -0.72
HTT-201ENST00000355072 ZCCHC6Q5VYS8 1495 aaKnown RBP10.52□□□□□ -0.72
HTT-201ENST00000355072 MS4A1P11836 297 aa10.48□□□□□ -0.73
HTT-201ENST00000355072 MSNP26038 577 aaKnown RBP10.48□□□□□ -0.73
HTT-201ENST00000355072 FAM50AQ14320 339 aaKnown RBP10.47□□□□□ -0.73
HTT-201ENST00000355072 TIMELESSQ9UNS1 1208 aa10.47□□□□□ -0.73
HTT-201ENST00000355072 MTERF4Q7Z6M4 381 aaKnown RBP10.47□□□□□ -0.73
HTT-201ENST00000355072 FKBP8Q14318 412 aa10.46□□□□□ -0.73
HTT-201ENST00000355072 RSPH6AQ9H0K4 717 aa10.46□□□□□ -0.73
HTT-201ENST00000355072 BAZ1AQ9NRL2 1556 aaPredicted RBP10.46□□□□□ -0.74
HTT-201ENST00000355072 CALRP27797 417 aaKnown RBP10.45□□□□□ -0.74
HTT-201ENST00000355072 CDCA8Q53HL2 280 aa10.44□□□□□ -0.74
HTT-201ENST00000355072 RSF1Q96T23 1441 aaPredicted RBP10.44□□□□□ -0.74
HTT-201ENST00000355072 SLC4A1APQ9BWU0 796 aaKnown RBP10.43□□□□□ -0.74
HTT-201ENST00000355072 ITGAEP38570 1179 aa10.43□□□□□ -0.74
HTT-201ENST00000355072 A0A0U1RQG5 324 aaPredicted RBP10.42□□□□□ -0.74
HTT-201ENST00000355072 HNRNPUQ00839 825 aaKnown RBP eCLIP10.42□□□□□ -0.74
HTT-201ENST00000355072 HAP1P54257 671 aaPredicted RBP10.42□□□□□ -0.74
HTT-201ENST00000355072 PNNQ9H307 717 aaKnown RBP10.42□□□□□ -0.74
HTT-201ENST00000355072 GOLGA3Q08378 1498 aa10.42□□□□□ -0.74
HTT-201ENST00000355072 TRIM52Q96A61 297 aa10.41□□□□□ -0.74
HTT-201ENST00000355072 SYAP1Q96A49 352 aaPredicted RBP10.41□□□□□ -0.74
HTT-201ENST00000355072 TMC1Q8TDI8 760 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms