RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
SF3A1-201ENST00000215793 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
SF3A1-201ENST00000215793 NISCHQ9Y2I1 1504 aa21.95■■□□□ 1.11
SF3A1-201ENST00000215793 SHROOM4Q9ULL8 1493 aa21.62■■□□□ 1.05
SF3A1-201ENST00000215793 PELP1Q8IZL8 1130 aaKnown RBP21.49■■□□□ 1.03
SF3A1-201ENST00000215793 EHMT2Q96KQ7 1210 aa21.39■■□□□ 1.01
SF3A1-201ENST00000215793 APLP2Q06481 763 aa21.32■■□□□ 1
SF3A1-201ENST00000215793 FAM9AQ8IZU1 332 aaPredicted RBP20.99■□□□□ 0.95
SF3A1-201ENST00000215793 PCGF6Q9BYE7 350 aa20.81■□□□□ 0.92
SF3A1-201ENST00000215793 TTBK1Q5TCY1 1321 aaPredicted RBP20.71■□□□□ 0.91
SF3A1-201ENST00000215793 ZEB1P37275 1124 aaPredicted RBP20.69■□□□□ 0.9
SF3A1-201ENST00000215793 CENPBP07199 599 aaPredicted RBP20.66■□□□□ 0.9
SF3A1-201ENST00000215793 TRIM41Q8WV44 630 aa20.61■□□□□ 0.89
SF3A1-201ENST00000215793 CCER1Q8TC90 406 aaPredicted RBP20.53■□□□□ 0.88
SF3A1-201ENST00000215793 RANGAP1P46060 587 aaPredicted RBP20.5■□□□□ 0.87
SF3A1-201ENST00000215793 ERICH6Q7L0X2 663 aa20.48■□□□□ 0.87
SF3A1-201ENST00000215793 ATP1B4Q9UN42 357 aaPredicted RBP20.41■□□□□ 0.86
SF3A1-201ENST00000215793 UBTFP17480 764 aaKnown RBP20.39■□□□□ 0.86
SF3A1-201ENST00000215793 NEFLP07196 543 aa20.24■□□□□ 0.83
SF3A1-201ENST00000215793 YTHDC1Q96MU7 727 aaKnown RBP20.02■□□□□ 0.8
SF3A1-201ENST00000215793 MYT1Q01538 1121 aa19.98■□□□□ 0.79
SF3A1-201ENST00000215793 TRIM26Q12899 539 aaPredicted RBP19.98■□□□□ 0.79
SF3A1-201ENST00000215793 PPARGC1BQ86YN6 1023 aaKnown RBP19.89■□□□□ 0.77
SF3A1-201ENST00000215793 HRCP23327 699 aa19.73■□□□□ 0.75
SF3A1-201ENST00000215793 ITGAEP38570 1179 aa19.71■□□□□ 0.75
SF3A1-201ENST00000215793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.7■□□□□ 0.74
SF3A1-201ENST00000215793 HNRNPUL2Q1KMD3 747 aaKnown RBP19.7■□□□□ 0.74
SF3A1-201ENST00000215793 DAXXQ9UER7 740 aaPredicted RBP19.67■□□□□ 0.74
SF3A1-201ENST00000215793 MYT1LQ9UL68 1186 aa19.66■□□□□ 0.74
SF3A1-201ENST00000215793 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
SF3A1-201ENST00000215793 POLR3GLQ9BT43 218 aa19.62■□□□□ 0.73
SF3A1-201ENST00000215793 LOC105371045A0A1W2PR82 267 aa19.58■□□□□ 0.73
SF3A1-201ENST00000215793 CNGB1Q14028 1251 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-201ENST00000215793 DIEXFQ68CQ4 756 aaKnown RBP19.3■□□□□ 0.68
SF3A1-201ENST00000215793 SLC4A1APQ9BWU0 796 aaKnown RBP19.26■□□□□ 0.67
SF3A1-201ENST00000215793 FAM50AQ14320 339 aaKnown RBP19.23■□□□□ 0.67
SF3A1-201ENST00000215793 CLSPNQ9HAW4 1339 aa19.21■□□□□ 0.67
SF3A1-201ENST00000215793 RTL5Q5HYW3 569 aaPredicted RBP19.2■□□□□ 0.66
SF3A1-201ENST00000215793 ZNF316A6NFI3 1004 aaPredicted RBP19.17■□□□□ 0.66
SF3A1-201ENST00000215793 TRIM52Q96A61 297 aa19.16■□□□□ 0.66
SF3A1-201ENST00000215793 NEUROD1Q13562 356 aa19.05■□□□□ 0.64
SF3A1-201ENST00000215793 ANP32CO43423 234 aa19.01■□□□□ 0.63
SF3A1-201ENST00000215793 PABPN1Q86U42 306 aaKnown RBP eCLIP18.98■□□□□ 0.63
SF3A1-201ENST00000215793 ZNF326Q5BKZ1 582 aaKnown RBP18.91■□□□□ 0.62
SF3A1-201ENST00000215793 ABCC9O60706 1549 aa18.91■□□□□ 0.62
SF3A1-201ENST00000215793 ZBTB47Q9UFB7 747 aaPredicted RBP18.89■□□□□ 0.61
SF3A1-201ENST00000215793 CDK11AQ9UQ88 783 aaPredicted RBP18.88■□□□□ 0.61
SF3A1-201ENST00000215793 GTF3C3Q9Y5Q9 886 aa18.86■□□□□ 0.61
SF3A1-201ENST00000215793 BCANQ96GW7 911 aa18.85■□□□□ 0.61
SF3A1-201ENST00000215793 FBLN2P98095 1184 aa18.79■□□□□ 0.6
SF3A1-201ENST00000215793 CSRNP3Q8WYN3 585 aa18.77■□□□□ 0.6
SF3A1-201ENST00000215793 NEFMP07197 916 aa18.75■□□□□ 0.59
SF3A1-201ENST00000215793 CANXP27824 592 aaKnown RBP18.73■□□□□ 0.59
SF3A1-201ENST00000215793 P3H3Q8IVL6 736 aa18.65■□□□□ 0.58
SF3A1-201ENST00000215793 ACIN1Q9UKV3 1341 aaKnown RBP18.61■□□□□ 0.57
SF3A1-201ENST00000215793 SLC24A1O60721 1099 aa18.6■□□□□ 0.57
SF3A1-201ENST00000215793 ANP32AP39687 249 aaKnown RBP18.59■□□□□ 0.57
SF3A1-201ENST00000215793 ZNF777Q9ULD5 760 aaPredicted RBP18.56■□□□□ 0.56
SF3A1-201ENST00000215793 ARID3CA6NKF2 412 aa18.56■□□□□ 0.56
SF3A1-201ENST00000215793 BCL11AQ9H165 835 aa18.52■□□□□ 0.55
SF3A1-201ENST00000215793 TONSLQ96HA7 1378 aa18.5■□□□□ 0.55
SF3A1-201ENST00000215793 ESF1Q9H501 851 aaKnown RBP18.42■□□□□ 0.54
SF3A1-201ENST00000215793 NPM2Q86SE8 214 aaKnown RBP18.38■□□□□ 0.53
SF3A1-201ENST00000215793 HNRNPUQ00839 825 aaKnown RBP eCLIP18.37■□□□□ 0.53
SF3A1-201ENST00000215793 FKBP8Q14318 412 aa18.37■□□□□ 0.53
SF3A1-201ENST00000215793 UPF2Q9HAU5 1272 aaKnown RBP18.36■□□□□ 0.53
SF3A1-201ENST00000215793 ANP32BQ92688 251 aaKnown RBP18.34■□□□□ 0.53
SF3A1-201ENST00000215793 CHGAP10645 457 aaKnown RBP18.34■□□□□ 0.53
SF3A1-201ENST00000215793 STAG3Q9UJ98 1225 aa18.33■□□□□ 0.53
SF3A1-201ENST00000215793 DDX10Q13206 875 aaKnown RBP18.33■□□□□ 0.52
SF3A1-201ENST00000215793 HSP90AA1P07900 732 aaKnown RBP18.32■□□□□ 0.52
SF3A1-201ENST00000215793 DCAF1Q9Y4B6 1507 aa18.31■□□□□ 0.52
SF3A1-201ENST00000215793 FAM9BQ8IZU0 186 aa18.3■□□□□ 0.52
SF3A1-201ENST00000215793 NPM1P06748 294 aaKnown RBP eCLIP18.29■□□□□ 0.52
SF3A1-201ENST00000215793 SCRIBQ14160 1630 aa18.27■□□□□ 0.52
SF3A1-201ENST00000215793 TMC1Q8TDI8 760 aa18.27■□□□□ 0.51
SF3A1-201ENST00000215793 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-201ENST00000215793 TSPY4P0CV99 314 aa18.22■□□□□ 0.51
SF3A1-201ENST00000215793 TSPY10P0CW01 314 aa18.22■□□□□ 0.51
SF3A1-201ENST00000215793 CCDC136Q96JN2 1154 aa18.21■□□□□ 0.51
SF3A1-201ENST00000215793 CHIC2Q9UKJ5 165 aa18.2■□□□□ 0.5
SF3A1-201ENST00000215793 WDR43Q15061 677 aaKnown RBP eCLIP18.17■□□□□ 0.5
SF3A1-201ENST00000215793 SALL2Q9Y467 1007 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-201ENST00000215793 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.16■□□□□ 0.51e-7■■□□□ 13.3
SF3A1-201ENST00000215793 MRS2Q9HD23 443 aa18.16■□□□□ 0.5
SF3A1-201ENST00000215793 MTUS2Q5JR59 1369 aa18.16■□□□□ 0.5
SF3A1-201ENST00000215793 ZCCHC6Q5VYS8 1495 aaKnown RBP18.13■□□□□ 0.49
SF3A1-201ENST00000215793 EIF5BO60841 1220 aaKnown RBP18.09■□□□□ 0.49
SF3A1-201ENST00000215793 KDM2AQ9Y2K7 1162 aa18.08■□□□□ 0.48
SF3A1-201ENST00000215793 EIF4G2P78344 907 aaKnown RBP eCLIP18.06■□□□□ 0.48
SF3A1-201ENST00000215793 CLIP1P30622 1438 aa18.05■□□□□ 0.48
SF3A1-201ENST00000215793 CHMP7Q8WUX9 453 aaPredicted RBP18.02■□□□□ 0.47
SF3A1-201ENST00000215793 PLPPR3Q6T4P5 718 aa18.01■□□□□ 0.47
SF3A1-201ENST00000215793 MYH16Q9H6N6 1097 aa18■□□□□ 0.47
SF3A1-201ENST00000215793 MIER1Q8N108 512 aa17.99■□□□□ 0.47
SF3A1-201ENST00000215793 EEA1Q15075 1411 aa17.97■□□□□ 0.47
SF3A1-201ENST00000215793 RSF1Q96T23 1441 aaPredicted RBP17.96■□□□□ 0.47
SF3A1-201ENST00000215793 GLIPR1L2Q4G1C9 344 aa17.95■□□□□ 0.46
SF3A1-201ENST00000215793 NBR1Q14596 966 aa17.94■□□□□ 0.46
SF3A1-201ENST00000215793 RRP7BPQ9NSQ0 103 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms