RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NISCHQ9Y2I1 1504 aa25.44■■□□□ 1.66
CLK3-205ENST00000561673 CCDC180Q9P1Z9 1646 aa22.66■■□□□ 1.22
CLK3-205ENST00000561673 ABCC9O60706 1549 aa22.57■■□□□ 1.2
CLK3-205ENST00000561673 RB1CC1Q8TDY2 1594 aa21.52■■□□□ 1.04
CLK3-205ENST00000561673 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
CLK3-205ENST00000561673 NACADO15069 1562 aa21.43■■□□□ 1.02
CLK3-205ENST00000561673 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.98
CLK3-205ENST00000561673 PABPN1Q86U42 306 aaKnown RBP eCLIP21.11■□□□□ 0.973e-7■□□□□ 9.5
CLK3-205ENST00000561673 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
CLK3-205ENST00000561673 DNAJC5BQ9UF47 199 aa21.08■□□□□ 0.97
CLK3-205ENST00000561673 DCAF1Q9Y4B6 1507 aa21■□□□□ 0.95
CLK3-205ENST00000561673 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
CLK3-205ENST00000561673 BICRAQ9NZM4 1560 aa20.9■□□□□ 0.94
CLK3-205ENST00000561673 SCRIBQ14160 1630 aa20.71■□□□□ 0.91
CLK3-205ENST00000561673 SHROOM4Q9ULL8 1493 aa20.61■□□□□ 0.89
CLK3-205ENST00000561673 EIF4G1Q04637 1599 aaKnown RBP20.38■□□□□ 0.85
CLK3-205ENST00000561673 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
CLK3-205ENST00000561673 CHIC1Q5VXU3 224 aa20.36■□□□□ 0.85
CLK3-205ENST00000561673 CECR2Q9BXF3 1484 aa20.31■□□□□ 0.84
CLK3-205ENST00000561673 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
CLK3-205ENST00000561673 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
CLK3-205ENST00000561673 ATAD2BQ9ULI0 1458 aa19.79■□□□□ 0.76
CLK3-205ENST00000561673 SMARCA4P51532 1647 aa19.76■□□□□ 0.75
CLK3-205ENST00000561673 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
CLK3-205ENST00000561673 SMARCA2P51531 1590 aa19.7■□□□□ 0.74
CLK3-205ENST00000561673 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
CLK3-205ENST00000561673 MROH2BQ7Z745 1585 aa19.61■□□□□ 0.73
CLK3-205ENST00000561673 BAZ1BQ9UIG0 1483 aaKnown RBP19.59■□□□□ 0.73
CLK3-205ENST00000561673 PEG3Q9GZU2 1588 aa19.57■□□□□ 0.72
CLK3-205ENST00000561673 ERCC6Q03468 1493 aa19.47■□□□□ 0.71
CLK3-205ENST00000561673 NESP48681 1621 aa19.45■□□□□ 0.7
CLK3-205ENST00000561673 WIZO95785 1651 aa19.36■□□□□ 0.69
CLK3-205ENST00000561673 CUX2O14529 1486 aa19.35■□□□□ 0.69
CLK3-205ENST00000561673 RSF1Q96T23 1441 aaPredicted RBP19.3■□□□□ 0.68
CLK3-205ENST00000561673 LAMC3Q9Y6N6 1575 aa19.29■□□□□ 0.68
CLK3-205ENST00000561673 CADPSQ9ULU8 1353 aa19.25■□□□□ 0.67
CLK3-205ENST00000561673 PDS5BQ9NTI5 1447 aa19.23■□□□□ 0.67
CLK3-205ENST00000561673 DNAJC5Q9H3Z4 198 aa19.2■□□□□ 0.66
CLK3-205ENST00000561673 THOC2Q8NI27 1593 aaKnown RBP19.15■□□□□ 0.66
CLK3-205ENST00000561673 KIF21AQ7Z4S6 1674 aa19.13■□□□□ 0.65
CLK3-205ENST00000561673 TOP2AP11388 1531 aaKnown RBP19.12■□□□□ 0.65
CLK3-205ENST00000561673 CFTRP13569 1480 aa19.05■□□□□ 0.64
CLK3-205ENST00000561673 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
CLK3-205ENST00000561673 FANCD2Q9BXW9 1451 aa19■□□□□ 0.63
CLK3-205ENST00000561673 CEP164Q9UPV0 1460 aa18.98■□□□□ 0.63
CLK3-205ENST00000561673 CCDC88BA6NC98 1476 aa18.96■□□□□ 0.63
CLK3-205ENST00000561673 WDR62O43379 1518 aa18.95■□□□□ 0.62
CLK3-205ENST00000561673 URB2Q14146 1524 aaKnown RBP18.84■□□□□ 0.61
CLK3-205ENST00000561673 PRDM2Q13029 1718 aa18.74■□□□□ 0.59
CLK3-205ENST00000561673 TOPBP1Q92547 1522 aa18.65■□□□□ 0.58
CLK3-205ENST00000561673 SUPT5HO00267 1087 aaKnown RBP18.64■□□□□ 0.57
CLK3-205ENST00000561673 ABCC8Q09428 1581 aa18.62■□□□□ 0.57
CLK3-205ENST00000561673 IFT140Q96RY7 1462 aa18.61■□□□□ 0.57
CLK3-205ENST00000561673 ZNF608Q9ULD9 1512 aaPredicted RBP18.59■□□□□ 0.57
CLK3-205ENST00000561673 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
CLK3-205ENST00000561673 OSCARQ8IYS5 282 aa18.57■□□□□ 0.56
CLK3-205ENST00000561673 POLA1P09884 1462 aaPredicted RBP18.48■□□□□ 0.55
CLK3-205ENST00000561673 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.558e-11■■■■■ 75.2
CLK3-205ENST00000561673 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
CLK3-205ENST00000561673 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
CLK3-205ENST00000561673 SOGA1O94964 1423 aa18.43■□□□□ 0.54
CLK3-205ENST00000561673 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
CLK3-205ENST00000561673 EIF4G3O43432 1585 aaKnown RBP18.42■□□□□ 0.54
CLK3-205ENST00000561673 CUX1P39880 1505 aa18.41■□□□□ 0.54
CLK3-205ENST00000561673 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.53
CLK3-205ENST00000561673 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
CLK3-205ENST00000561673 FBLN2P98095 1184 aa18.32■□□□□ 0.52
CLK3-205ENST00000561673 WDR97A6NE52 1622 aa18.24■□□□□ 0.51
CLK3-205ENST00000561673 SNAPC4Q5SXM2 1469 aa18.24■□□□□ 0.51
CLK3-205ENST00000561673 CHD1O14646 1710 aa18.23■□□□□ 0.51
CLK3-205ENST00000561673 GRIN2BQ13224 1484 aa18.22■□□□□ 0.51
CLK3-205ENST00000561673 RIMBP3CA6NJZ7 1639 aa18.22■□□□□ 0.51
CLK3-205ENST00000561673 RIMBP3BA6NNM3 1639 aa18.22■□□□□ 0.51
CLK3-205ENST00000561673 RIMBP3Q9UFD9 1639 aa18.22■□□□□ 0.51
CLK3-205ENST00000561673 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
CLK3-205ENST00000561673 ARHGEF11O15085 1522 aa18.2■□□□□ 0.5
CLK3-205ENST00000561673 ABCA10Q8WWZ4 1543 aa18.19■□□□□ 0.5
CLK3-205ENST00000561673 GAPVD1Q14C86 1478 aa18.19■□□□□ 0.5
CLK3-205ENST00000561673 MAGI1Q96QZ7 1491 aaPredicted RBP18.19■□□□□ 0.5
CLK3-205ENST00000561673 WRNQ14191 1432 aaPredicted RBP eCLIP18.18■□□□□ 0.5
CLK3-205ENST00000561673 TOP2BQ02880 1626 aa18.14■□□□□ 0.49
CLK3-205ENST00000561673 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
CLK3-205ENST00000561673 CYB5RLQ6IPT4 315 aa18.13■□□□□ 0.49
CLK3-205ENST00000561673 SYNJ2O15056 1496 aa18.13■□□□□ 0.49
CLK3-205ENST00000561673 ABCA5Q8WWZ7 1642 aa18.11■□□□□ 0.49
CLK3-205ENST00000561673 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
CLK3-205ENST00000561673 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
CLK3-205ENST00000561673 CLASP1Q7Z460 1538 aa18.07■□□□□ 0.48
CLK3-205ENST00000561673 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
CLK3-205ENST00000561673 ARAP1Q96P48 1450 aa18.05■□□□□ 0.48
CLK3-205ENST00000561673 GRIN2AQ12879 1464 aa17.98■□□□□ 0.47
CLK3-205ENST00000561673 FHAD1B1AJZ9 1412 aa17.97■□□□□ 0.47
CLK3-205ENST00000561673 ERICH3Q5RHP9 1530 aa17.96■□□□□ 0.47
CLK3-205ENST00000561673 ADAMTS12P58397 1594 aa17.96■□□□□ 0.46
CLK3-205ENST00000561673 NUP160Q12769 1436 aa17.92■□□□□ 0.46
CLK3-205ENST00000561673 CEP170Q5SW79 1584 aa17.89■□□□□ 0.45
CLK3-205ENST00000561673 TRHP20396 242 aaPredicted RBP17.86■□□□□ 0.45
CLK3-205ENST00000561673 IGF1RP08069 1367 aa17.85■□□□□ 0.45
CLK3-205ENST00000561673 KIF27Q86VH2 1401 aa17.83■□□□□ 0.45
CLK3-205ENST00000561673 ERCC6L2Q5T890 1561 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms