RNA–Protein interactions for RNA: ENST00000533194.5

CCT3-216, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 3

Gene CCT3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-216ENST00000533194 NISCHQ9Y2I1 1504 aa18.02■□□□□ 0.47
CCT3-216ENST00000533194 ABCC9O60706 1549 aa16.4■□□□□ 0.22
CCT3-216ENST00000533194 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
CCT3-216ENST00000533194 RB1CC1Q8TDY2 1594 aa15.55■□□□□ 0.08
CCT3-216ENST00000533194 DNAJC5BQ9UF47 199 aa15.42■□□□□ 0.06
CCT3-216ENST00000533194 DCAF8L2P0C7V8 631 aa15.41■□□□□ 0.06
CCT3-216ENST00000533194 NACADO15069 1562 aa15.4■□□□□ 0.06
CCT3-216ENST00000533194 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCT3-216ENST00000533194 MYO15BQ96JP2 1530 aa15.12■□□□□ 0.01
CCT3-216ENST00000533194 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
CCT3-216ENST00000533194 UNC13AQ9UPW8 1703 aa14.97□□□□□ -0.01
CCT3-216ENST00000533194 SHROOM4Q9ULL8 1493 aa14.91□□□□□ -0.02
CCT3-216ENST00000533194 ZCCHC6Q5VYS8 1495 aaKnown RBP14.9□□□□□ -0.02
CCT3-216ENST00000533194 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
CCT3-216ENST00000533194 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
CCT3-216ENST00000533194 SCRIBQ14160 1630 aa14.78□□□□□ -0.04
CCT3-216ENST00000533194 CC2D2AQ9P2K1 1620 aa14.74□□□□□ -0.05
CCT3-216ENST00000533194 EIF4G1Q04637 1599 aaKnown RBP14.7□□□□□ -0.06
CCT3-216ENST00000533194 DNAJC5Q9H3Z4 198 aa14.35□□□□□ -0.11
CCT3-216ENST00000533194 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
CCT3-216ENST00000533194 CUX2O14529 1486 aa14.21□□□□□ -0.13
CCT3-216ENST00000533194 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
CCT3-216ENST00000533194 ATAD2BQ9ULI0 1458 aa14.14□□□□□ -0.15
CCT3-216ENST00000533194 SMARCA2P51531 1590 aa14.13□□□□□ -0.15
CCT3-216ENST00000533194 HMGXB3Q12766 1538 aa14.09□□□□□ -0.15
CCT3-216ENST00000533194 SMARCA4P51532 1647 aa14.05□□□□□ -0.16
CCT3-216ENST00000533194 BAZ1BQ9UIG0 1483 aaKnown RBP14.05□□□□□ -0.16
CCT3-216ENST00000533194 BAZ1AQ9NRL2 1556 aaPredicted RBP14.03□□□□□ -0.16
CCT3-216ENST00000533194 NESP48681 1621 aa14□□□□□ -0.17
CCT3-216ENST00000533194 LAMC3Q9Y6N6 1575 aa13.92□□□□□ -0.18
CCT3-216ENST00000533194 PDS5BQ9NTI5 1447 aa13.91□□□□□ -0.18
CCT3-216ENST00000533194 PEG3Q9GZU2 1588 aa13.91□□□□□ -0.18
CCT3-216ENST00000533194 MROH2BQ7Z745 1585 aa13.86□□□□□ -0.19
CCT3-216ENST00000533194 THOC2Q8NI27 1593 aaKnown RBP13.85□□□□□ -0.19
CCT3-216ENST00000533194 CADPSQ9ULU8 1353 aa13.81□□□□□ -0.2
CCT3-216ENST00000533194 MRC2Q9UBG0 1479 aa13.76□□□□□ -0.21
CCT3-216ENST00000533194 TRIM41Q8WV44 630 aa13.74□□□□□ -0.21
CCT3-216ENST00000533194 KIF21AQ7Z4S6 1674 aa13.74□□□□□ -0.21
CCT3-216ENST00000533194 CEP164Q9UPV0 1460 aa13.7□□□□□ -0.22
CCT3-216ENST00000533194 WDR62O43379 1518 aa13.68□□□□□ -0.22
CCT3-216ENST00000533194 FANCD2Q9BXW9 1451 aa13.65□□□□□ -0.22
CCT3-216ENST00000533194 WIZO95785 1651 aa13.65□□□□□ -0.22
CCT3-216ENST00000533194 CFTRP13569 1480 aa13.59□□□□□ -0.23
CCT3-216ENST00000533194 OSCARQ8IYS5 282 aa13.58□□□□□ -0.24
CCT3-216ENST00000533194 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
CCT3-216ENST00000533194 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
CCT3-216ENST00000533194 URB2Q14146 1524 aaKnown RBP13.49□□□□□ -0.25
CCT3-216ENST00000533194 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
CCT3-216ENST00000533194 ABCC8Q09428 1581 aa13.37□□□□□ -0.27
CCT3-216ENST00000533194 CCDC88BA6NC98 1476 aa13.37□□□□□ -0.27
CCT3-216ENST00000533194 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
CCT3-216ENST00000533194 TOPBP1Q92547 1522 aa13.34□□□□□ -0.27
CCT3-216ENST00000533194 PRDM2Q13029 1718 aa13.3□□□□□ -0.28
CCT3-216ENST00000533194 RIMBP3CA6NJZ7 1639 aa13.3□□□□□ -0.28
CCT3-216ENST00000533194 RIMBP3BA6NNM3 1639 aa13.3□□□□□ -0.28
CCT3-216ENST00000533194 RIMBP3Q9UFD9 1639 aa13.3□□□□□ -0.28
CCT3-216ENST00000533194 ARHGEF11O15085 1522 aa13.29□□□□□ -0.28
CCT3-216ENST00000533194 FBLN2P98095 1184 aa13.29□□□□□ -0.28
CCT3-216ENST00000533194 DNMBPQ6XZF7 1577 aa13.28□□□□□ -0.28
CCT3-216ENST00000533194 CYB5RLQ6IPT4 315 aa13.27□□□□□ -0.29
CCT3-216ENST00000533194 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
CCT3-216ENST00000533194 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.295e-9■■■■□ 26.3
CCT3-216ENST00000533194 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
CCT3-216ENST00000533194 POLA1P09884 1462 aaPredicted RBP13.2□□□□□ -0.3
CCT3-216ENST00000533194 SOGA1O94964 1423 aa13.18□□□□□ -0.3
CCT3-216ENST00000533194 TDRD9Q8NDG6 1382 aaKnown RBP13.17□□□□□ -0.3
CCT3-216ENST00000533194 TARBP1Q13395 1621 aaKnown RBP13.17□□□□□ -0.3
CCT3-216ENST00000533194 CHMP7Q8WUX9 453 aaPredicted RBP13.16□□□□□ -0.3
CCT3-216ENST00000533194 ARAP1Q96P48 1450 aa13.15□□□□□ -0.3
CCT3-216ENST00000533194 RAD54L2Q9Y4B4 1467 aa13.14□□□□□ -0.31
CCT3-216ENST00000533194 CHD1O14646 1710 aa13.13□□□□□ -0.31
CCT3-216ENST00000533194 SNAPC4Q5SXM2 1469 aa13.12□□□□□ -0.31
CCT3-216ENST00000533194 FGD5Q6ZNL6 1462 aa13.1□□□□□ -0.31
CCT3-216ENST00000533194 WDR97A6NE52 1622 aa13.1□□□□□ -0.31
CCT3-216ENST00000533194 MAGI1Q96QZ7 1491 aaPredicted RBP13.1□□□□□ -0.31
CCT3-216ENST00000533194 GRIN2BQ13224 1484 aa13.09□□□□□ -0.31
CCT3-216ENST00000533194 SYNJ1O43426 1573 aa13.08□□□□□ -0.32
CCT3-216ENST00000533194 SYNJ2O15056 1496 aa13.04□□□□□ -0.32
CCT3-216ENST00000533194 CUX1P39880 1505 aa13.03□□□□□ -0.32
CCT3-216ENST00000533194 CLASP1Q7Z460 1538 aa13.03□□□□□ -0.32
CCT3-216ENST00000533194 GAPVD1Q14C86 1478 aa13.01□□□□□ -0.33
CCT3-216ENST00000533194 AEBP2Q6ZN18 517 aaPredicted RBP12.99□□□□□ -0.33
CCT3-216ENST00000533194 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
CCT3-216ENST00000533194 ABCA10Q8WWZ4 1543 aa12.94□□□□□ -0.34
CCT3-216ENST00000533194 WRNQ14191 1432 aaPredicted RBP eCLIP12.94□□□□□ -0.34
CCT3-216ENST00000533194 PBRM1Q86U86 1689 aa12.9□□□□□ -0.34
CCT3-216ENST00000533194 GRIN2AQ12879 1464 aa12.9□□□□□ -0.34
CCT3-216ENST00000533194 ABCA5Q8WWZ7 1642 aa12.88□□□□□ -0.35
CCT3-216ENST00000533194 FHAD1B1AJZ9 1412 aa12.86□□□□□ -0.35
CCT3-216ENST00000533194 NUP160Q12769 1436 aa12.84□□□□□ -0.35
CCT3-216ENST00000533194 ADAMTS12P58397 1594 aa12.83□□□□□ -0.36
CCT3-216ENST00000533194 CEP170Q5SW79 1584 aa12.81□□□□□ -0.36
CCT3-216ENST00000533194 ERICH3Q5RHP9 1530 aa12.79□□□□□ -0.36
CCT3-216ENST00000533194 NPM1P06748 294 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCT3-216ENST00000533194 TOP2BQ02880 1626 aa12.79□□□□□ -0.36
CCT3-216ENST00000533194 ERCC6L2Q5T890 1561 aa12.78□□□□□ -0.36
CCT3-216ENST00000533194 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
CCT3-216ENST00000533194 JPH4Q96JJ6 628 aa12.76□□□□□ -0.37
CCT3-216ENST00000533194 BIVM-ERCC5R4GMW8 1640 aa12.76□□□□□ -0.37
CCT3-216ENST00000533194 SHROOM2Q13796 1616 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms