Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.81□□□□□ -1.481e-6■■■■■ 28.6
SF3B1O75533 CSDE1-212ENST00000529046 571 ntTSL 44.67□□□□□ -1.661e-6■■■■■ 28.6
SF3B1O75533 CSDE1-211ENST00000525970 503 ntTSL 43.92□□□□□ -1.781e-6■■■■■ 28.6
SF3B1O75533 CSDE1-208ENST00000524652 562 ntTSL 43.04□□□□□ -1.921e-6■■■■■ 28.6
SF3B1O75533 CSDE1-209ENST00000525132 521 ntTSL 52.94□□□□□ -1.941e-6■■■■■ 28.6
SF3B1O75533 CSDE1-210ENST00000525878 626 ntTSL 40.99□□□□□ -2.251e-6■■■■■ 28.6
SF3B1O75533 NOP56-220ENST00000616692 2662 ntTSL 1 (best)15.36■□□□□ 0.052e-8■■■■■ 28.6
SF3B1O75533 NOP56-219ENST00000612233 2980 nt14.4□□□□□ -0.12e-8■■■■■ 28.6
SF3B1O75533 NOP56-202ENST00000415272 1628 ntTSL 510.52□□□□□ -0.732e-8■■■■■ 28.6
SF3B1O75533 NOP56-207ENST00000467196 1320 ntTSL 59.5□□□□□ -0.892e-8■■■■■ 28.6
SF3B1O75533 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.64■■□□□ 1.068e-8■■■■■ 28.6
SF3B1O75533 NUSAP1-206ENST00000558582 546 ntTSL 58.76□□□□□ -1.011e-6■■■■■ 28.5
SF3B1O75533 NUSAP1-207ENST00000559046 580 ntTSL 58.67□□□□□ -1.021e-6■■■■■ 28.5
SF3B1O75533 NUSAP1-209ENST00000559659 529 ntTSL 28.52□□□□□ -1.051e-6■■■■■ 28.5
SF3B1O75533 ATXN2L-223ENST00000568266 1294 ntTSL 518.82■□□□□ 0.62e-7■■■■■ 28.5
SF3B1O75533 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.55■□□□□ 0.086e-6■■■■■ 28.5
SF3B1O75533 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.346e-6■■■■■ 28.5
SF3B1O75533 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.97□□□□□ -1.456e-6■■■■■ 28.5
SF3B1O75533 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.94□□□□□ -1.626e-6■■■■■ 28.5
SF3B1O75533 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.726e-6■■■■■ 28.5
SF3B1O75533 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.94■■□□□ 1.582e-6■■■■■ 28.4
SF3B1O75533 TMC6-222ENST00000592076 693 ntTSL 317.79■□□□□ 0.442e-6■■■■■ 28.4
SF3B1O75533 MARCH6-203ENST00000502795 580 ntTSL 415.04■□□□□ -01e-6■■■■■ 28.4
SF3B1O75533 MARCH6-209ENST00000510872 577 ntTSL 413.48□□□□□ -0.251e-6■■■■■ 28.4
SF3B1O75533 MARCH6-207ENST00000507863 582 ntTSL 48.45□□□□□ -1.061e-6■■■■■ 28.4
SF3B1O75533 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.4□□□□□ -1.871e-6■■■■■ 28.4
SF3B1O75533 SLC25A36-205ENST00000502594 1163 ntTSL 1 (best)19.51■□□□□ 0.714e-7■■■■■ 28.4
SF3B1O75533 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.12■□□□□ 0.494e-7■■■■■ 28.4
SF3B1O75533 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.284e-7■■■■■ 28.4
SF3B1O75533 SLC25A36-212ENST00000513887 578 ntTSL 315.15■□□□□ 0.024e-7■■■■■ 28.4
SF3B1O75533 SLC25A36-215ENST00000631654 620 ntTSL 514.99□□□□□ -0.014e-7■■■■■ 28.4
SF3B1O75533 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.53■■■□□ 2.483e-6■■■■■ 28.4
SF3B1O75533 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.73e-6■■■■■ 28.4
SF3B1O75533 UBALD2-202ENST00000587913 286 ntTSL 312.93□□□□□ -0.343e-6■■■■■ 28.4
SF3B1O75533 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC8.53□□□□□ -1.044e-6■■■■■ 28.4
SF3B1O75533 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.89□□□□□ -1.154e-6■■■■■ 28.4
SF3B1O75533 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC7.78□□□□□ -1.164e-6■■■■■ 28.4
SF3B1O75533 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.67□□□□□ -1.184e-6■■■■■ 28.4
SF3B1O75533 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.64□□□□□ -1.194e-6■■■■■ 28.4
SF3B1O75533 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.264e-6■■■■■ 28.4
SF3B1O75533 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC7.01□□□□□ -1.294e-6■■■■■ 28.4
SF3B1O75533 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.112e-6■■■■■ 28.4
SF3B1O75533 SRRT-213ENST00000611405 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.442e-6■■■■■ 28.4
SF3B1O75533 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.442e-6■■■■■ 28.4
SF3B1O75533 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.442e-6■■■■■ 28.4
SF3B1O75533 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.77■□□□□ 0.441e-6■■■■■ 28.3
SF3B1O75533 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC13.24□□□□□ -0.291e-6■■■■■ 28.3
SF3B1O75533 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.171e-6■■■■■ 28.3
SF3B1O75533 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.49□□□□□ -2.011e-6■■■■■ 28.3
SF3B1O75533 DYRK1A-206ENST00000455097 338 ntTSL 1 (best)10.25□□□□□ -0.772e-6■■■■■ 28.3
SF3B1O75533 DYRK1A-205ENST00000426672 519 ntTSL 53.83□□□□□ -1.82e-6■■■■■ 28.3
SF3B1O75533 RBMX-212ENST00000568578 4887 ntTSL 1 (best)9.8□□□□□ -0.842e-6■■■■■ 28.3
SF3B1O75533 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.69□□□□□ -1.52e-6■■■■■ 28.3
SF3B1O75533 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.23■□□□□ 0.031e-6■■■■■ 28.2
SF3B1O75533 SRRM2-215ENST00000573498 994 ntTSL 36.51□□□□□ -1.371e-6■■■■■ 28.2
SF3B1O75533 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.66□□□□□ -0.228e-7■■■■■ 28.2
SF3B1O75533 GS1-600G8.3-201ENST00000431486 2249 ntTSL 1 (best) BASIC9.99□□□□□ -0.812e-6■■■■■ 28.2
SF3B1O75533 SLC3A2-223ENST00000546312 564 ntTSL 29.54□□□□□ -0.882e-7■■■■■ 28.2
SF3B1O75533 PSMD11-206ENST00000578213 480 ntTSL 323.98■■□□□ 1.432e-7■■■■■ 28.2
SF3B1O75533 TRA2A-204ENST00000474586 868 ntTSL 323.32■■□□□ 1.322e-7■■■■■ 28.2
SF3B1O75533 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.762e-7■■■■■ 28.2
SF3B1O75533 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.712e-7■■■■■ 28.2
SF3B1O75533 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.572e-7■■■■■ 28.2
SF3B1O75533 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.472e-7■■■■■ 28.2
SF3B1O75533 RBCK1-214ENST00000621487 473 ntTSL 217.78■□□□□ 0.441e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-209ENST00000441879 724 ntTSL 317.47■□□□□ 0.391e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-211ENST00000444822 724 ntTSL 317.47■□□□□ 0.391e-9■■■■■ 28.2
SF3B1O75533 TRA2A-203ENST00000448549 582 ntTSL 417.17■□□□□ 0.342e-7■■■■■ 28.2
SF3B1O75533 TRA2A-208ENST00000490942 862 ntTSL 1 (best)17.12■□□□□ 0.332e-7■■■■■ 28.2
SF3B1O75533 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.282e-7■■■■■ 28.2
SF3B1O75533 PSMD11-208ENST00000579451 582 ntTSL 216.78■□□□□ 0.282e-7■■■■■ 28.2
SF3B1O75533 PCYT1A-212ENST00000460677 1393 ntTSL 1 (best)16.69■□□□□ 0.261e-9■■■■■ 28.2
SF3B1O75533 RNASET2-212ENST00000510083 2280 ntTSL 216.21■□□□□ 0.181e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-202ENST00000411591 1084 ntTSL 315.95■□□□□ 0.141e-9■■■■■ 28.2
SF3B1O75533 PSMD11-207ENST00000578397 1178 ntTSL 215.34■□□□□ 0.052e-7■■■■■ 28.2
SF3B1O75533 PCYT1A-214ENST00000473978 1430 ntTSL 1 (best)14.21□□□□□ -0.141e-9■■■■■ 28.2
SF3B1O75533 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.241e-9■■■■■ 28.2
SF3B1O75533 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)13.52□□□□□ -0.242e-7■■■■■ 28.2
SF3B1O75533 PCYT1A-206ENST00000431016 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.291e-9■■■■■ 28.2
SF3B1O75533 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.382e-7■■■■■ 28.2
SF3B1O75533 PCYT1A-216ENST00000491544 589 ntTSL 311.04□□□□□ -0.641e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-210ENST00000443555 549 ntTSL 510.94□□□□□ -0.661e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.791e-9■■■■■ 28.2
SF3B1O75533 PCYT1A-208ENST00000438634 555 ntTSL 44.06□□□□□ -1.761e-9■■■■■ 28.2
SF3B1O75533 EIF1-206ENST00000586699 572 ntTSL 23.6□□□□□ -1.831e-9■■■■■ 28.2
SF3B1O75533 AC069061.4-201ENST00000581294 1347 ntBASIC13.23□□□□□ -0.294e-7■■■■■ 28.2
SF3B1O75533 ZNF451-207ENST00000444273 3402 ntTSL 1 (best)15.95■□□□□ 0.142e-6■■■■■ 28.2
SF3B1O75533 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.052e-6■■■■■ 28.2
SF3B1O75533 SLC2A1-205ENST00000475162 598 ntTSL 515.65■□□□□ 0.14e-7■■■■■ 28.1
SF3B1O75533 NAP1L4-203ENST00000430811 860 ntTSL 228.01■■■□□ 2.072e-7■■■■■ 28.1
SF3B1O75533 NAP1L4-218ENST00000530064 625 ntTSL 58.62□□□□□ -1.032e-7■■■■■ 28.1
SF3B1O75533 NAP1L4-205ENST00000455338 352 ntTSL 52.59□□□□□ -22e-7■■■■■ 28.1
SF3B1O75533 RAB3GAP1-206ENST00000497080 446 ntTSL 52.85□□□□□ -1.955e-6■■■■■ 28.1
SF3B1O75533 SF1-210ENST00000443908 767 ntTSL 314.28□□□□□ -0.121e-6■■■■■ 28
SF3B1O75533 SF1-206ENST00000413725 843 ntTSL 214.2□□□□□ -0.141e-6■■■■■ 28
SF3B1O75533 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.56■□□□□ 0.42e-6■■■■■ 28
SF3B1O75533 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.332e-6■■■■■ 28
SF3B1O75533 CCT6A-203ENST00000462133 665 ntTSL 312.12□□□□□ -0.472e-6■■■■■ 28
SF3B1O75533 CCT6A-204ENST00000466479 745 ntTSL 28.32□□□□□ -1.082e-6■■■■■ 28
SF3B1O75533 CCT6A-209ENST00000494736 411 ntTSL 26.84□□□□□ -1.312e-6■■■■■ 28
Retrieved 100 of 46,956 protein–RNA pairs in 3432.9 ms