RNA–Protein interactions for RNA: ENST00000443908.5

SF1-210, Transcript of splicing factor 1, humanhuman

TSL 3

Gene SF1, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-210ENST00000443908 NISCHQ9Y2I1 1504 aa31.36■■■□□ 2.61
SF1-210ENST00000443908 ABCC9O60706 1549 aa28.2■■■□□ 2.1
SF1-210ENST00000443908 CCDC180Q9P1Z9 1646 aa27.78■■■□□ 2.04
SF1-210ENST00000443908 DCAF8L2P0C7V8 631 aa26.71■■□□□ 1.87
SF1-210ENST00000443908 DNAJC5BQ9UF47 199 aa26.68■■□□□ 1.86
SF1-210ENST00000443908 RB1CC1Q8TDY2 1594 aa26.66■■□□□ 1.86
SF1-210ENST00000443908 NACADO15069 1562 aa26.42■■□□□ 1.82
SF1-210ENST00000443908 PABPN1Q86U42 306 aaKnown RBP eCLIP26.38■■□□□ 1.81
SF1-210ENST00000443908 ZCCHC6Q5VYS8 1495 aaKnown RBP26.3■■□□□ 1.8
SF1-210ENST00000443908 DCAF1Q9Y4B6 1507 aa26.05■■□□□ 1.76
SF1-210ENST00000443908 MYO15BQ96JP2 1530 aa25.93■■□□□ 1.74
SF1-210ENST00000443908 UNC13AQ9UPW8 1703 aa25.91■■□□□ 1.74
SF1-210ENST00000443908 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
SF1-210ENST00000443908 SCRIBQ14160 1630 aa25.46■■□□□ 1.67
SF1-210ENST00000443908 SHROOM4Q9ULL8 1493 aa25.41■■□□□ 1.66
SF1-210ENST00000443908 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
SF1-210ENST00000443908 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
SF1-210ENST00000443908 EIF4G1Q04637 1599 aaKnown RBP25.25■■□□□ 1.63
SF1-210ENST00000443908 DNAJC5Q9H3Z4 198 aa24.63■■□□□ 1.53
SF1-210ENST00000443908 NCAPD3P42695 1498 aa24.44■■□□□ 1.5
SF1-210ENST00000443908 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
SF1-210ENST00000443908 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
SF1-210ENST00000443908 CUX2O14529 1486 aa24.28■■□□□ 1.48
SF1-210ENST00000443908 BAZ1AQ9NRL2 1556 aaPredicted RBP24.28■■□□□ 1.48
SF1-210ENST00000443908 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
SF1-210ENST00000443908 SMARCA4P51532 1647 aa24.21■■□□□ 1.47
SF1-210ENST00000443908 MROH2BQ7Z745 1585 aa24.16■■□□□ 1.46
SF1-210ENST00000443908 NESP48681 1621 aa24.15■■□□□ 1.46
SF1-210ENST00000443908 HMGXB3Q12766 1538 aa24.15■■□□□ 1.46
SF1-210ENST00000443908 RSF1Q96T23 1441 aaPredicted RBP24.14■■□□□ 1.45
SF1-210ENST00000443908 BAZ1BQ9UIG0 1483 aaKnown RBP24.13■■□□□ 1.45
SF1-210ENST00000443908 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
SF1-210ENST00000443908 SUPT5HO00267 1087 aaKnown RBP23.93■■□□□ 1.42
SF1-210ENST00000443908 WIZO95785 1651 aa23.91■■□□□ 1.42
SF1-210ENST00000443908 PDS5BQ9NTI5 1447 aa23.86■■□□□ 1.41
SF1-210ENST00000443908 LAMC3Q9Y6N6 1575 aa23.86■■□□□ 1.41
SF1-210ENST00000443908 THOC2Q8NI27 1593 aaKnown RBP23.77■■□□□ 1.4
SF1-210ENST00000443908 CADPSQ9ULU8 1353 aa23.77■■□□□ 1.4
SF1-210ENST00000443908 TOP2AP11388 1531 aaKnown RBP23.76■■□□□ 1.39
SF1-210ENST00000443908 KIF21AQ7Z4S6 1674 aa23.7■■□□□ 1.39
SF1-210ENST00000443908 TRIM41Q8WV44 630 aa23.61■■□□□ 1.37
SF1-210ENST00000443908 MRC2Q9UBG0 1479 aa23.59■■□□□ 1.37
SF1-210ENST00000443908 CEP164Q9UPV0 1460 aa23.48■■□□□ 1.35
SF1-210ENST00000443908 WDR62O43379 1518 aa23.46■■□□□ 1.35
SF1-210ENST00000443908 FANCD2Q9BXW9 1451 aa23.46■■□□□ 1.35
SF1-210ENST00000443908 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
SF1-210ENST00000443908 CFTRP13569 1480 aa23.38■■□□□ 1.33
SF1-210ENST00000443908 OSCARQ8IYS5 282 aa23.38■■□□□ 1.33
SF1-210ENST00000443908 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
SF1-210ENST00000443908 IFT140Q96RY7 1462 aa23.03■■□□□ 1.28
SF1-210ENST00000443908 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
SF1-210ENST00000443908 ZNF608Q9ULD9 1512 aaPredicted RBP23.01■■□□□ 1.27
SF1-210ENST00000443908 TOPBP1Q92547 1522 aa22.96■■□□□ 1.27
SF1-210ENST00000443908 FBLN2P98095 1184 aa22.93■■□□□ 1.26
SF1-210ENST00000443908 ABCC8Q09428 1581 aa22.93■■□□□ 1.26
SF1-210ENST00000443908 CYB5RLQ6IPT4 315 aa22.88■■□□□ 1.25
SF1-210ENST00000443908 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.251e-7■■■■■ 54.5
SF1-210ENST00000443908 RIMBP3CA6NJZ7 1639 aa22.85■■□□□ 1.25
SF1-210ENST00000443908 RIMBP3BA6NNM3 1639 aa22.85■■□□□ 1.25
SF1-210ENST00000443908 RIMBP3Q9UFD9 1639 aa22.85■■□□□ 1.25
SF1-210ENST00000443908 CHIC1Q5VXU3 224 aa22.82■■□□□ 1.24
SF1-210ENST00000443908 DNMBPQ6XZF7 1577 aa22.81■■□□□ 1.24
SF1-210ENST00000443908 ARHGEF11O15085 1522 aa22.79■■□□□ 1.24
SF1-210ENST00000443908 EIF4G3O43432 1585 aaKnown RBP22.76■■□□□ 1.23
SF1-210ENST00000443908 WRNQ14191 1432 aaPredicted RBP eCLIP22.74■■□□□ 1.23
SF1-210ENST00000443908 TRHP20396 242 aaPredicted RBP22.74■■□□□ 1.23
SF1-210ENST00000443908 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
SF1-210ENST00000443908 SOGA1O94964 1423 aa22.73■■□□□ 1.23
SF1-210ENST00000443908 POLA1P09884 1462 aaPredicted RBP22.71■■□□□ 1.23
SF1-210ENST00000443908 RAD54L2Q9Y4B4 1467 aa22.71■■□□□ 1.23
SF1-210ENST00000443908 TARBP1Q13395 1621 aaKnown RBP22.68■■□□□ 1.22
SF1-210ENST00000443908 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
SF1-210ENST00000443908 TOP2BQ02880 1626 aa22.64■■□□□ 1.22
SF1-210ENST00000443908 BIVM-ERCC5R4GMW8 1640 aa22.64■■□□□ 1.22
SF1-210ENST00000443908 SYNJ1O43426 1573 aa22.64■■□□□ 1.22
SF1-210ENST00000443908 CUX1P39880 1505 aa22.63■■□□□ 1.21
SF1-210ENST00000443908 CHD1O14646 1710 aa22.62■■□□□ 1.21
SF1-210ENST00000443908 FGD5Q6ZNL6 1462 aa22.57■■□□□ 1.2
SF1-210ENST00000443908 ARAP1Q96P48 1450 aa22.55■■□□□ 1.2
SF1-210ENST00000443908 SNAPC4Q5SXM2 1469 aa22.54■■□□□ 1.2
SF1-210ENST00000443908 GRIN2BQ13224 1484 aa22.47■■□□□ 1.19
SF1-210ENST00000443908 MAGI1Q96QZ7 1491 aaPredicted RBP22.44■■□□□ 1.18
SF1-210ENST00000443908 SYNJ2O15056 1496 aa22.4■■□□□ 1.18
SF1-210ENST00000443908 WDR97A6NE52 1622 aa22.39■■□□□ 1.18
SF1-210ENST00000443908 GAPVD1Q14C86 1478 aa22.39■■□□□ 1.17
SF1-210ENST00000443908 CLASP1Q7Z460 1538 aa22.36■■□□□ 1.17
SF1-210ENST00000443908 EEA1Q15075 1411 aa22.32■■□□□ 1.16
SF1-210ENST00000443908 ABCA10Q8WWZ4 1543 aa22.28■■□□□ 1.16
SF1-210ENST00000443908 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
SF1-210ENST00000443908 AEBP2Q6ZN18 517 aaPredicted RBP22.22■■□□□ 1.15
SF1-210ENST00000443908 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
SF1-210ENST00000443908 RUSC2Q8N2Y8 1516 aa22.17■■□□□ 1.14
SF1-210ENST00000443908 ABCA5Q8WWZ7 1642 aa22.16■■□□□ 1.14
SF1-210ENST00000443908 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
SF1-210ENST00000443908 FHAD1B1AJZ9 1412 aa22.09■■□□□ 1.13
SF1-210ENST00000443908 CSRNP3Q8WYN3 585 aa22.08■■□□□ 1.13
SF1-210ENST00000443908 ERCC6L2Q5T890 1561 aa22.07■■□□□ 1.12
SF1-210ENST00000443908 FAM9AQ8IZU1 332 aaPredicted RBP22.06■■□□□ 1.12
SF1-210ENST00000443908 NUP160Q12769 1436 aa22.06■■□□□ 1.12
SF1-210ENST00000443908 JPH4Q96JJ6 628 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms