Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-12■■■■■ 806.3
SF3B1O75533 PRPSAP2-209ENST00000441887 700 ntTSL 58.87□□□□□ -0.992e-27■■■■■ 620.3
SF3B1O75533 ARFGAP3-205ENST00000454099 542 ntTSL 417.03■□□□□ 0.328e-26■■■■■ 585.9
SF3B1O75533 ARFGAP3-206ENST00000493606 580 ntTSL 215.45■□□□□ 0.068e-26■■■■■ 585.9
SF3B1O75533 ARFGAP3-202ENST00000435208 501 ntTSL 38.12□□□□□ -1.118e-26■■■■■ 585.9
SF3B1O75533 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.02■□□□□ 0.791e-25■■■■■ 568
SF3B1O75533 LINC00910-205ENST00000592094 1042 ntTSL 1 (best)19.31■□□□□ 0.681e-25■■■■■ 568
SF3B1O75533 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.87□□□□□ -0.031e-25■■■■■ 568
SF3B1O75533 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC14.08□□□□□ -0.151e-25■■■■■ 568
SF3B1O75533 LINC00910-204ENST00000588654 541 ntTSL 413.17□□□□□ -0.31e-25■■■■■ 568
SF3B1O75533 LINC00910-202ENST00000586231 2890 ntTSL 2 BASIC11.78□□□□□ -0.521e-25■■■■■ 568
SF3B1O75533 RNU2-4P-201ENST00000606190 192 ntBASIC0.12□□□□□ -2.391e-25■■■■■ 568
SF3B1O75533 MARF1-206ENST00000548216 2529 ntTSL 518.83■□□□□ 0.63e-24■■■■■ 551.4
SF3B1O75533 MARF1-205ENST00000548025 5891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.593e-24■■■■■ 551.4
SF3B1O75533 MARF1-214ENST00000552553 5053 ntTSL 510.08□□□□□ -0.83e-24■■■■■ 551.4
SF3B1O75533 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC9.62□□□□□ -0.873e-24■■■■■ 551.4
SF3B1O75533 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC9.54□□□□□ -0.883e-24■■■■■ 551.4
SF3B1O75533 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.063e-24■■■■■ 551.4
SF3B1O75533 EIF6-208ENST00000462894 453 ntTSL 328.77■■■□□ 2.21e-29■■■■■ 516.9
SF3B1O75533 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.471e-29■■■■■ 516.9
SF3B1O75533 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.381e-29■■■■■ 516.9
SF3B1O75533 EIF6-207ENST00000456600 551 ntTSL 323.64■■□□□ 1.381e-29■■■■■ 516.9
SF3B1O75533 EIF6-204ENST00000415116 739 ntTSL 522.6■■□□□ 1.211e-29■■■■■ 516.9
SF3B1O75533 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.849e-23■■■■■ 516.9
SF3B1O75533 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.05■□□□□ 0.481e-29■■■■■ 516.9
SF3B1O75533 EIF6-206ENST00000447927 932 ntTSL 1 (best)17.95■□□□□ 0.461e-29■■■■■ 516.9
SF3B1O75533 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.361e-29■■■■■ 516.9
SF3B1O75533 FOXK2-208ENST00000571160 496 ntTSL 514.32□□□□□ -0.129e-23■■■■■ 516.9
SF3B1O75533 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.753e-21■■■■■ 482.5
SF3B1O75533 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.493e-21■■■■■ 482.5
SF3B1O75533 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.413e-21■■■■■ 482.5
SF3B1O75533 SGSM2-204ENST00000572841 2450 ntTSL 216.55■□□□□ 0.243e-21■■■■■ 482.5
SF3B1O75533 CRB2-203ENST00000460253 3947 ntTSL 216.38■□□□□ 0.213e-21■■■■■ 482.5
SF3B1O75533 STK36-215ENST00000486644 730 ntTSL 515.83■□□□□ 0.123e-21■■■■■ 482.5
SF3B1O75533 SGSM2-206ENST00000572925 644 ntTSL 314.26□□□□□ -0.133e-21■■■■■ 482.5
SF3B1O75533 TCEANC2-204ENST00000498272 2538 ntTSL 213.5□□□□□ -0.253e-21■■■■■ 482.5
SF3B1O75533 STK36-209ENST00000462031 582 ntTSL 213.46□□□□□ -0.253e-21■■■■■ 482.5
SF3B1O75533 SGSM2-211ENST00000574563 3410 ntTSL 2 BASIC11.76□□□□□ -0.533e-21■■■■■ 482.5
SF3B1O75533 STK36-207ENST00000440309 4721 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.63e-21■■■■■ 482.5
SF3B1O75533 STK36-204ENST00000419433 2093 ntTSL 211.01□□□□□ -0.653e-21■■■■■ 482.5
SF3B1O75533 STK36-202ENST00000392105 4821 ntTSL 1 (best) BASIC10.14□□□□□ -0.793e-21■■■■■ 482.5
SF3B1O75533 STK36-201ENST00000295709 4933 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-21■■■■■ 482.5
SF3B1O75533 CIC-205ENST00000573349 927 ntTSL 220.43■□□□□ 0.863e-6■■■■■ 449.2
SF3B1O75533 CIC-209ENST00000576505 1304 ntTSL 319.62■□□□□ 0.733e-6■■■■■ 449.2
SF3B1O75533 CIC-206ENST00000575287 846 ntTSL 317.98■□□□□ 0.473e-6■■■■■ 449.2
SF3B1O75533 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.043e-6■■■■■ 449.2
SF3B1O75533 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.811e-19■■■■■ 448
SF3B1O75533 NELFE-208ENST00000481121 1543 ntTSL 222.7■■□□□ 1.221e-19■■■■■ 448
SF3B1O75533 SLC48A1-208ENST00000551301 1070 ntTSL 222.34■■□□□ 1.171e-19■■■■■ 448
SF3B1O75533 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.131e-19■■■■■ 448
SF3B1O75533 SLC48A1-207ENST00000549243 577 ntTSL 321.5■■□□□ 1.031e-19■■■■■ 448
SF3B1O75533 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.021e-19■■■■■ 448
SF3B1O75533 NELFE-211ENST00000492185 1786 ntTSL 220.72■□□□□ 0.911e-19■■■■■ 448
SF3B1O75533 MYO9B-210ENST00000597572 660 ntTSL 518.41■□□□□ 0.541e-19■■■■■ 448
SF3B1O75533 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.421e-19■■■■■ 448
SF3B1O75533 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.411e-19■■■■■ 448
SF3B1O75533 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.261e-19■■■■■ 448
SF3B1O75533 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.59■□□□□ 0.251e-19■■■■■ 448
SF3B1O75533 UNKL-203ENST00000382757 897 ntTSL 515.81■□□□□ 0.121e-19■■■■■ 448
SF3B1O75533 POP7-202ENST00000457480 483 ntTSL 315.81■□□□□ 0.121e-19■■■■■ 448
SF3B1O75533 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.11e-19■■■■■ 448
SF3B1O75533 SGSM3-204ENST00000457767 1086 ntTSL 215.54■□□□□ 0.081e-19■■■■■ 448
SF3B1O75533 TMTC2-205ENST00000551915 3304 ntTSL 1 (best)14.41□□□□□ -0.11e-19■■■■■ 448
SF3B1O75533 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.271e-19■■■■■ 448
SF3B1O75533 NELFE-209ENST00000488426 1855 ntTSL 513.28□□□□□ -0.281e-19■■■■■ 448
SF3B1O75533 SLC48A1-202ENST00000442892 1024 ntTSL 1 (best) BASIC13.26□□□□□ -0.291e-19■■■■■ 448
SF3B1O75533 NELFE-205ENST00000441998 1075 ntAPPRIS ALT2 TSL 512.26□□□□□ -0.451e-19■■■■■ 448
SF3B1O75533 AC022639.1-203ENST00000521958 579 ntTSL 4 BASIC12.2□□□□□ -0.461e-19■■■■■ 448
SF3B1O75533 SLC48A1-206ENST00000548498 618 ntTSL 310.73□□□□□ -0.691e-19■■■■■ 448
SF3B1O75533 NRBP1-207ENST00000486701 813 ntTSL 39.17□□□□□ -0.941e-19■■■■■ 448
SF3B1O75533 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC8.88□□□□□ -0.991e-19■■■■■ 448
SF3B1O75533 TMTC2-202ENST00000546590 4527 ntTSL 1 (best)8.39□□□□□ -1.071e-19■■■■■ 448
SF3B1O75533 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC7.87□□□□□ -1.151e-19■■■■■ 448
SF3B1O75533 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.52□□□□□ -1.21e-19■■■■■ 448
SF3B1O75533 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.97□□□□□ -1.451e-19■■■■■ 448
SF3B1O75533 PABPC1-206ENST00000518293 608 ntTSL 33.22□□□□□ -1.891e-19■■■■■ 448
SF3B1O75533 CHURC1-FNTB-204ENST00000553743 207 ntTSL 27.73□□□□□ -1.173e-6■■■■■ 426.2
SF3B1O75533 CHURC1-FNTB-202ENST00000551823 517 ntTSL 22.97□□□□□ -1.933e-6■■■■■ 426.2
SF3B1O75533 MZT2A-204ENST00000445782 980 ntTSL 229.46■■■□□ 2.313e-18■■■■■ 413.6
SF3B1O75533 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.843e-18■■■■■ 413.6
SF3B1O75533 SIRT7-208ENST00000572350 713 ntTSL 326.25■■□□□ 1.793e-18■■■■■ 413.6
SF3B1O75533 SIRT7-204ENST00000571213 683 ntTSL 226.02■■□□□ 1.763e-18■■■■■ 413.6
SF3B1O75533 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.44■■□□□ 1.53e-18■■■■■ 413.6
SF3B1O75533 PTOV1-205ENST00000595934 1880 nt24.4■■□□□ 1.53e-18■■■■■ 413.6
SF3B1O75533 SIRT7-212ENST00000573367 711 ntTSL 224.22■■□□□ 1.473e-18■■■■■ 413.6
SF3B1O75533 SIRT7-209ENST00000572671 656 ntTSL 223.94■■□□□ 1.423e-18■■■■■ 413.6
SF3B1O75533 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.43e-18■■■■■ 413.6
SF3B1O75533 ZNF264-204ENST00000597447 681 ntTSL 323.79■■□□□ 1.43e-18■■■■■ 413.6
SF3B1O75533 SIRT7-202ENST00000536038 1883 ntTSL 223.44■■□□□ 1.343e-18■■■■■ 413.6
SF3B1O75533 SIRT7-215ENST00000574495 920 ntTSL 223.01■■□□□ 1.273e-18■■■■■ 413.6
SF3B1O75533 ZNF264-203ENST00000594126 359 ntTSL 322.94■■□□□ 1.263e-18■■■■■ 413.6
SF3B1O75533 SIRT7-219ENST00000575360 754 ntTSL 322.88■■□□□ 1.253e-18■■■■■ 413.6
SF3B1O75533 SIRT7-203ENST00000570367 685 ntTSL 222.58■■□□□ 1.213e-18■■■■■ 413.6
SF3B1O75533 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.02■■□□□ 1.123e-18■■■■■ 413.6
SF3B1O75533 ANKRD13B-208ENST00000583728 582 ntTSL 420.66■□□□□ 0.93e-18■■■■■ 413.6
SF3B1O75533 SIRT7-221ENST00000577065 874 ntTSL 320.3■□□□□ 0.843e-18■■■■■ 413.6
SF3B1O75533 SIRT7-213ENST00000573576 465 ntTSL 319.99■□□□□ 0.793e-18■■■■■ 413.6
SF3B1O75533 SIRT7-206ENST00000571832 2511 ntTSL 219.72■□□□□ 0.753e-18■■■■■ 413.6
SF3B1O75533 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.743e-18■■■■■ 413.6
SF3B1O75533 LRWD1-202ENST00000463739 1062 ntTSL 519.51■□□□□ 0.713e-18■■■■■ 413.6
Retrieved 100 of 46,956 protein–RNA pairs in 3283.8 ms